Gchil534.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil534.t1
Unique Name	Gchil534.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	620

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000060_pilon	contig	tig00000060_pilon:730182..732041 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil534	Gchil534	Gracilaria chilensis NLEC103_M9 male	gene	tig00000060_pilon 730182..732041 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil534.t1.start1	Gchil534.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000060_pilon 730182..730184 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil534.t1.CDS1	Gchil534.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000060_pilon 730182..732041 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil534.t1.exon1	Gchil534.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000060_pilon 730182..732041 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil534.t1.stop1	Gchil534.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000060_pilon 732039..732041 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil534.t1	Gchil534.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000060_pilon 730182..732041 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000060_pilon:730182..732041+
coding sequence from alignment at tig00000060_pilon:730182..732041+

mRNA sequence

>Gchil534.t1 ID=Gchil534.t1|Name=Gchil534.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=620bp
MASRRDAASNMLRQIYAKGLPPGPASAAVTAAAAAAASSASPPMLAQPIS
QQPVNQSSYPLHSRSFSSNYASYPQPALHSPLTNQPIHPVKQQPLQQPLS
YPLSHSQTLHPHSPPPPPPQPQPLRSHPSQQYQLPAQHPIPPNHSLHHQP
PLHQPPQHQPPHQPPPQQHRPSTLRPVQDHKPQPLQPPPPPPPPEEEPPL
FYVDRSPDSDLERELEQQEQQEQQEQHQPAHEGTSQQPTQTAAMHTIPDA
SRSTSAPQTVSGAQPLTTPSHVPTSIAPRPTNTPQPSVAVAATPTTTGPT
STAVPSVAQLAHQIATPSKDIEMAPLPSSEVETGAKRVDKPIPAFQQVQT
SAMPAVPRSTTVLDASATSPASGLGSQDLMHGRTHAANNIDFARTAGIFA
SALPHVQPSVSQKNGHTASKSDASSAVPHLKRRLGTDSQWPGVNGKGDKI
MTAEPLPKKARGMSSPPATPIEFHILCAYDENVRKCLQELFAANLFILPR
IHLFSSDNGLELIEVAPGVSVPVTTFEQNVGERPEHVAVALAFEAGSLST
DLWVARAKHLAKGLQSALMPRMVLLSTNPLLQAFAKMDVIDVVDPKDSLV
GYALEILQQSSQNQGKALE*

spliced messenger RNA

>Gchil534.t1 ID=Gchil534.t1|Name=Gchil534.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1860bp|location=Sequence derived from alignment at tig00000060_pilon:730182..732041+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTAGTCGTCGCGACGCCGCATCCAATATGTTACGCCAGATCTATGC
AAAGGGTCTACCACCTGGTCctgcctctgccgccgttaccgctgccgctg
ctgccgctgctTCGTCCGCGTCGCCTCCCATGCTTGCGCAGCCCATTTCG
CAGCAGCCCGTCAATCAATCGTCGTACCCGCTGCATTCGCGCTCCTTTTC
CTCCAATTACGCTTCGTATCCGCAGCCTGCGCTCCATTCTCCGCTAACCA
ATCAACCTATACATCCCGTCAAGCAGCAGCCACTTCAGCAGCCCTTGTCG
TATCCGTTGTCTCATTCGCAAACGCTGCATCCACACTCTccgccgcctcc
accgccgcagccgcAACCATTGCGATCTCACCCGTCGCAGCAGTATCAGC
TACCAGCTCAACATCCAATCCCTCCAAACCACTCACTGCACCACCAGCCA
CCTCTACACCAGCCACCTCAGCACCAACCACCGCACCAGCCACCACCGCA
ACAGCACCGCCCATCTACTCTTAGACCCGTGCAAGACCACAAACCCCAGc
cgctacagcccccgcccccgcctccgcccccgGAGGAAGAGCCACCTTTG
TTCTATGTAGACAGGAGCCCAGATTCGGATCTTGAGCGAGAATTGGaaca
acaagagcaacaagagcaacaagagcaacatcaacCGGCACACGAGGGAA
CGTCGCAGCAGCCAACTCAGACAGCTGCAATGCATACAATTCCAGATGCG
TCGCGTTCTACGTCGGCTCCTCAGACAGTCTCTGGAGCCCAACCACTCAC
AACCCCGTCCCATGTTCCAACATCAATTGCGCCTCGCCCTACAAACACAC
CGCAACCATCTGTCGCCGTTGCCGCCACCCCAACGACTACCGGTCCTACA
TCAACTGCTGTCCCTTCGGTCGCGCAACTTGCTCACCAAATCGCAACTCC
ATCGAAAGACATAGAAATGGCCCCCCTGCCATCCTCCGAGGTCGAAACAG
GCGCGAAACGCGTTGACAAGCCGATTCCAGCTTTTCAGCAAGTTCAAACT
TCTGCCATGCCTGCTGTGCCACGGTCTACGACTGTGTTGGACGCATCTGC
GACATCACCAGCTTCAGGCCTCGGCTCACAAGATCTTATGCATGGTCGCA
CTCATGCGGCCAACAATATTGATTTTGCGCGCACCGCTGGGATATTCGCT
TCAGCGCTGCCACATGTCCAGCCATCTGTCTCCCAGAAAAACGGCCATAC
TGCGTCCAAGTCAGACGCCAGCTCAGCAGTACCTCATTTGAAACGCAGGC
TTGGGACTGACTCACAATGGCCGGGGGTGAATGGAAAGGGAGACAAAATC
ATGACAGCAGAGCCACTGCCAAAGAAAGCGAGAGGCATGTCATCACCCCC
CGCCACGCCAATTGAGTTTCATATTCTCTGTGCGTACGATGAGAATGTGA
GAAAATGTCTTCAAGAGCTGTTTGCGGCAAATCTCTTCATTCTGCCACGG
ATACATTTGTTCAGTTCAGATAATGGTTTAGAGCTCATCGAGGTTGCCCC
CGGGGTGAGTGTGCCCGTAACGACATTCGAGCAAAACGTGGGTGAACGAC
CGGAACATGTGGCTGTGGCACTTGCGTTTGAAGCAGGGTCTCTCAGCACT
GACTTGTGGGTCGCGCGTGCGAAGCATCTTGCCAAAGGTCTACAGAGTGC
TCTTATGCCTAGGATGGTTCTACTGTCTACTAATCCTCTATTGCAAGCGT
TTGCGAAGATGGACGTGATTGACGTAGTCGACCCCAAGGATAGTCTTGTA
GGTTATGCATTGGAAATTCTACAGCAGAGCTCGCAGAATCAGGGAAAGGC
TTTGGAATGA

protein sequence of Gchil534.t1

>Gchil534.t1 ID=Gchil534.t1|Name=Gchil534.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=620bp
MASRRDAASNMLRQIYAKGLPPGPASAAVTAAAAAAASSASPPMLAQPIS
QQPVNQSSYPLHSRSFSSNYASYPQPALHSPLTNQPIHPVKQQPLQQPLS
YPLSHSQTLHPHSPPPPPPQPQPLRSHPSQQYQLPAQHPIPPNHSLHHQP
PLHQPPQHQPPHQPPPQQHRPSTLRPVQDHKPQPLQPPPPPPPPEEEPPL
FYVDRSPDSDLERELEQQEQQEQQEQHQPAHEGTSQQPTQTAAMHTIPDA
SRSTSAPQTVSGAQPLTTPSHVPTSIAPRPTNTPQPSVAVAATPTTTGPT
STAVPSVAQLAHQIATPSKDIEMAPLPSSEVETGAKRVDKPIPAFQQVQT
SAMPAVPRSTTVLDASATSPASGLGSQDLMHGRTHAANNIDFARTAGIFA
SALPHVQPSVSQKNGHTASKSDASSAVPHLKRRLGTDSQWPGVNGKGDKI
MTAEPLPKKARGMSSPPATPIEFHILCAYDENVRKCLQELFAANLFILPR
IHLFSSDNGLELIEVAPGVSVPVTTFEQNVGERPEHVAVALAFEAGSLST
DLWVARAKHLAKGLQSALMPRMVLLSTNPLLQAFAKMDVIDVVDPKDSLV
GYALEILQQSSQNQGKALE*

mRNA from alignment at tig00000060_pilon:730182..732041+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil534.t1 ID=Gchil534.t1|Name=Gchil534.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1860bp|location=Sequence derived from alignment at tig00000060_pilon:730182..732041+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTAGTCGTCGCGACGCCGCATCCAATATGTTACGCCAGATCTATGC
AAAGGGTCTACCACCTGGTCctgcctctgccgccgttaccgctgccgctg
ctgccgctgctTCGTCCGCGTCGCCTCCCATGCTTGCGCAGCCCATTTCG
CAGCAGCCCGTCAATCAATCGTCGTACCCGCTGCATTCGCGCTCCTTTTC
CTCCAATTACGCTTCGTATCCGCAGCCTGCGCTCCATTCTCCGCTAACCA
ATCAACCTATACATCCCGTCAAGCAGCAGCCACTTCAGCAGCCCTTGTCG
TATCCGTTGTCTCATTCGCAAACGCTGCATCCACACTCTccgccgcctcc
accgccgcagccgcAACCATTGCGATCTCACCCGTCGCAGCAGTATCAGC
TACCAGCTCAACATCCAATCCCTCCAAACCACTCACTGCACCACCAGCCA
CCTCTACACCAGCCACCTCAGCACCAACCACCGCACCAGCCACCACCGCA
ACAGCACCGCCCATCTACTCTTAGACCCGTGCAAGACCACAAACCCCAGc
cgctacagcccccgcccccgcctccgcccccgGAGGAAGAGCCACCTTTG
TTCTATGTAGACAGGAGCCCAGATTCGGATCTTGAGCGAGAATTGGaaca
acaagagcaacaagagcaacaagagcaacatcaacCGGCACACGAGGGAA
CGTCGCAGCAGCCAACTCAGACAGCTGCAATGCATACAATTCCAGATGCG
TCGCGTTCTACGTCGGCTCCTCAGACAGTCTCTGGAGCCCAACCACTCAC
AACCCCGTCCCATGTTCCAACATCAATTGCGCCTCGCCCTACAAACACAC
CGCAACCATCTGTCGCCGTTGCCGCCACCCCAACGACTACCGGTCCTACA
TCAACTGCTGTCCCTTCGGTCGCGCAACTTGCTCACCAAATCGCAACTCC
ATCGAAAGACATAGAAATGGCCCCCCTGCCATCCTCCGAGGTCGAAACAG
GCGCGAAACGCGTTGACAAGCCGATTCCAGCTTTTCAGCAAGTTCAAACT
TCTGCCATGCCTGCTGTGCCACGGTCTACGACTGTGTTGGACGCATCTGC
GACATCACCAGCTTCAGGCCTCGGCTCACAAGATCTTATGCATGGTCGCA
CTCATGCGGCCAACAATATTGATTTTGCGCGCACCGCTGGGATATTCGCT
TCAGCGCTGCCACATGTCCAGCCATCTGTCTCCCAGAAAAACGGCCATAC
TGCGTCCAAGTCAGACGCCAGCTCAGCAGTACCTCATTTGAAACGCAGGC
TTGGGACTGACTCACAATGGCCGGGGGTGAATGGAAAGGGAGACAAAATC
ATGACAGCAGAGCCACTGCCAAAGAAAGCGAGAGGCATGTCATCACCCCC
CGCCACGCCAATTGAGTTTCATATTCTCTGTGCGTACGATGAGAATGTGA
GAAAATGTCTTCAAGAGCTGTTTGCGGCAAATCTCTTCATTCTGCCACGG
ATACATTTGTTCAGTTCAGATAATGGTTTAGAGCTCATCGAGGTTGCCCC
CGGGGTGAGTGTGCCCGTAACGACATTCGAGCAAAACGTGGGTGAACGAC
CGGAACATGTGGCTGTGGCACTTGCGTTTGAAGCAGGGTCTCTCAGCACT
GACTTGTGGGTCGCGCGTGCGAAGCATCTTGCCAAAGGTCTACAGAGTGC
TCTTATGCCTAGGATGGTTCTACTGTCTACTAATCCTCTATTGCAAGCGT
TTGCGAAGATGGACGTGATTGACGTAGTCGACCCCAAGGATAGTCTTGTA
GGTTATGCATTGGAAATTCTACAGCAGAGCTCGCAGAATCAGGGAAAGGC
TTTGGAATGA

Coding sequence (CDS) from alignment at tig00000060_pilon:730182..732041+

>Gchil534.t1 ID=Gchil534.t1|Name=Gchil534.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1860bp|location=Sequence derived from alignment at tig00000060_pilon:730182..732041+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTAGTCGTCGCGACGCCGCATCCAATATGTTACGCCAGATCTATGC
AAAGGGTCTACCACCTGGTCctgcctctgccgccgttaccgctgccgctg
ctgccgctgctTCGTCCGCGTCGCCTCCCATGCTTGCGCAGCCCATTTCG
CAGCAGCCCGTCAATCAATCGTCGTACCCGCTGCATTCGCGCTCCTTTTC
CTCCAATTACGCTTCGTATCCGCAGCCTGCGCTCCATTCTCCGCTAACCA
ATCAACCTATACATCCCGTCAAGCAGCAGCCACTTCAGCAGCCCTTGTCG
TATCCGTTGTCTCATTCGCAAACGCTGCATCCACACTCTccgccgcctcc
accgccgcagccgcAACCATTGCGATCTCACCCGTCGCAGCAGTATCAGC
TACCAGCTCAACATCCAATCCCTCCAAACCACTCACTGCACCACCAGCCA
CCTCTACACCAGCCACCTCAGCACCAACCACCGCACCAGCCACCACCGCA
ACAGCACCGCCCATCTACTCTTAGACCCGTGCAAGACCACAAACCCCAGc
cgctacagcccccgcccccgcctccgcccccgGAGGAAGAGCCACCTTTG
TTCTATGTAGACAGGAGCCCAGATTCGGATCTTGAGCGAGAATTGGaaca
acaagagcaacaagagcaacaagagcaacatcaacCGGCACACGAGGGAA
CGTCGCAGCAGCCAACTCAGACAGCTGCAATGCATACAATTCCAGATGCG
TCGCGTTCTACGTCGGCTCCTCAGACAGTCTCTGGAGCCCAACCACTCAC
AACCCCGTCCCATGTTCCAACATCAATTGCGCCTCGCCCTACAAACACAC
CGCAACCATCTGTCGCCGTTGCCGCCACCCCAACGACTACCGGTCCTACA
TCAACTGCTGTCCCTTCGGTCGCGCAACTTGCTCACCAAATCGCAACTCC
ATCGAAAGACATAGAAATGGCCCCCCTGCCATCCTCCGAGGTCGAAACAG
GCGCGAAACGCGTTGACAAGCCGATTCCAGCTTTTCAGCAAGTTCAAACT
TCTGCCATGCCTGCTGTGCCACGGTCTACGACTGTGTTGGACGCATCTGC
GACATCACCAGCTTCAGGCCTCGGCTCACAAGATCTTATGCATGGTCGCA
CTCATGCGGCCAACAATATTGATTTTGCGCGCACCGCTGGGATATTCGCT
TCAGCGCTGCCACATGTCCAGCCATCTGTCTCCCAGAAAAACGGCCATAC
TGCGTCCAAGTCAGACGCCAGCTCAGCAGTACCTCATTTGAAACGCAGGC
TTGGGACTGACTCACAATGGCCGGGGGTGAATGGAAAGGGAGACAAAATC
ATGACAGCAGAGCCACTGCCAAAGAAAGCGAGAGGCATGTCATCACCCCC
CGCCACGCCAATTGAGTTTCATATTCTCTGTGCGTACGATGAGAATGTGA
GAAAATGTCTTCAAGAGCTGTTTGCGGCAAATCTCTTCATTCTGCCACGG
ATACATTTGTTCAGTTCAGATAATGGTTTAGAGCTCATCGAGGTTGCCCC
CGGGGTGAGTGTGCCCGTAACGACATTCGAGCAAAACGTGGGTGAACGAC
CGGAACATGTGGCTGTGGCACTTGCGTTTGAAGCAGGGTCTCTCAGCACT
GACTTGTGGGTCGCGCGTGCGAAGCATCTTGCCAAAGGTCTACAGAGTGC
TCTTATGCCTAGGATGGTTCTACTGTCTACTAATCCTCTATTGCAAGCGT
TTGCGAAGATGGACGTGATTGACGTAGTCGACCCCAAGGATAGTCTTGTA
GGTTATGCATTGGAAATTCTACAGCAGAGCTCGCAGAATCAGGGAAAGGC
TTTGGAATGA