Gchil4153.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil4153.t1
Unique NameGchil4153.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length514
Homology
BLAST of Gchil4153.t1 vs. uniprot
Match: A0A2V3J1F1_9FLOR (HTH myb-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1F1_9FLOR)

HSP 1 Score: 268 bits (685), Expect = 3.550e-79
Identity = 183/505 (36.24%), Postives = 276/505 (54.65%), Query Frame = 0
Query:    3 LVSCSMEFCMLYSSSTLHALVRIALIAVLHEIEERSATYVSRDYRRCVHYLIDVFQDKKIKSQELQEFRDTAVLILRRVSRLFRDSRKRTAMSIIRKQQRKNSWPSLVAVLRKEEKRLMAEYTR-VSGNVPSDTNKVRSLKRSRNRRKHVHERDFIYQRGDDFDEDLLIENNSAGSESGDKYSVSL--DYLDNEFEAPSTKFTSTRPQRVWPLKPRMRDSEWKSRAQIRKNSGMTHEFRSDSGKEAVGSVRHGSKRNM-IHPKDDEDSVEYGGLESQDFPSAVVGSRPDD--IEDQRDQECERDPIQQSSEELQDPGLVLGNSITLSDELGQAKLHGRETCVEDLHKASLALDALGPDDPLRM----ADESTRRRAWRKHGIKRSPREASPIPDSEGVQIMKRRKPNPRRLQKSPEIRHRDEGKNAYGQKLKRGRFLPHEDEWILQGIKKYGWGAWKEIVNEYYRDVDYTRNPVSVKDRARTLDIDPDKYP-KHGLRGRPRYFQE 496
            LVS  M+  M  + ST+ AL+R+ +I  LHE+   S  Y SR++ R  H++ DVF D K+++ +L+  RD  +  +R+ ++  RDS K TA+  + + ++KN    +  +L+++   L  EY++  +G++PSD   V   K      K      F+     D + +    +   G E G+  +     D +  E E P     S+       ++     S  K R + +K        R+   +E+VG VRH  +R      +DD +S EY  ++S DFP+ V  S  DD  +  Q  ++  R   +  + E          S+TLSD+L  A L   E C+++LH+AS +L   GP DPL+     A ++ RRR+    G    PREASPIP+S+G Q MK + P+ + L  +P  R R+E KN +GQ +KRGRF  HED+W+++GIKKYGWGAW  IVNEYY + DYTR P+S+KDRARTL++DP+KYP K G  GR R  +E
Sbjct:   98 LVSFIMDSGMTLAESTVLALMRVTIIFSLHEVILSSMRYNSREFNRTFHFICDVFSDSKVRNVQLKRARDKGISTIRKAAKAIRDSEKGTALLFLHEYEKKNPLREIARLLKRKAHELEMEYSKFAAGSIPSDI--VVEKKHHPRSTKSKRRDSFVPTAFSDAERNGADSDGLNGGEDGEPSAEPAYPDVVLPEEEEPGIHHESSDDHDGQAMEAVEEPSVEKER-KTKKAMYTERGSRAHLDEESVGRVRHERRREKRAGAEDDLNSKEYESMDSLDFPAEVADSESDDEHVLPQSKKKRVRGQARHGTTE---------ESVTLSDQLDHANLEENEHCIQELHEASASLKRTGPADPLQSSLKDAKKAKRRRSAPTRGPAPPPREASPIPESDGTQ-MKYKTPHSKSLNTTPTKRRREEVKNEFGQVIKRGRFQQHEDQWLVEGIKKYGWGAWTNIVNEYYAECDYTRMPMSLKDRARTLNLDPEKYPMKRGGSGRRRAIRE 589          
BLAST of Gchil4153.t1 vs. uniprot
Match: R7QBA1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBA1_CHOCR)

HSP 1 Score: 91.3 bits (225), Expect = 1.050e-15
Identity = 69/194 (35.57%), Postives = 109/194 (56.19%), Query Frame = 0
Query:  315 VLGNSITLSDELGQAKLHGR--ETCVEDLHKASLALDALGPDDPLR--MADESTRRRAWRKHGIKR-----SPREASPIPDSEGVQIMKRRKPNPRRLQKSPE---IRHRDEGKNAYGQKLKRGRFLPHEDEWILQGIKKYGWGAWKEIVNEYYRDVDYTRNPVSVKDRARTLDIDPDKYPKHG-----LRGRP 491
            V G + + SDE+ ++++ GR  ET V  L +A+    A G  DPLR  + D    RR  R   + +     + R ASPIPDS  +   KR+      +  S E   + +++   N  G+ ++ GRF  +EDE +++G+ +YGWG W++I +++ +   YTR P+S+KDRART+++DP KYP         RGRP
Sbjct:  497 VRGETDSDSDEISRSEVTGRGGET-VRKLREANARSRASGIPDPLRDSVRDAKHARRRVRSSLMLQYSGDVNGRAASPIPDSAPIIRRKRKMRQDIDMDASSEEELVTNQEPIGN--GRLMRTGRFQIYEDELLVEGLTRYGWGMWRQISDDFGKG-KYTRTPMSLKDRARTMNLDPSKYPVPADCGIVKRGRP 686          
The following BLAST results are available for this feature:
BLAST of Gchil4153.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J1F1_9FLOR3.550e-7936.24HTH myb-type domain-containing protein n=1 Tax=Gra... [more]
R7QBA1_CHOCR1.050e-1535.57Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 424..478
e-value: 1.7E-4
score: 30.9
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 420..476
score: 6.155979
NoneNo IPR availableGENE3D1.10.10.60coord: 419..477
e-value: 3.7E-8
score: 34.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 231..311
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 376..424
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 472..499
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 231..268
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 472..513
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 402..424
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 286..305
NoneNo IPR availableCDDcd11660SANT_TRFcoord: 432..475
e-value: 1.09011E-7
score: 46.4063
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 420..481
score: 11.06693
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 423..475

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1048050..1049591 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4153.t1Gchil4153.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004373_pilon 1048050..1049591 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil4153.t1 ID=Gchil4153.t1|Name=Gchil4153.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=514bp
MRLVSCSMEFCMLYSSSTLHALVRIALIAVLHEIEERSATYVSRDYRRCV
HYLIDVFQDKKIKSQELQEFRDTAVLILRRVSRLFRDSRKRTAMSIIRKQ
QRKNSWPSLVAVLRKEEKRLMAEYTRVSGNVPSDTNKVRSLKRSRNRRKH
VHERDFIYQRGDDFDEDLLIENNSAGSESGDKYSVSLDYLDNEFEAPSTK
FTSTRPQRVWPLKPRMRDSEWKSRAQIRKNSGMTHEFRSDSGKEAVGSVR
HGSKRNMIHPKDDEDSVEYGGLESQDFPSAVVGSRPDDIEDQRDQECERD
PIQQSSEELQDPGLVLGNSITLSDELGQAKLHGRETCVEDLHKASLALDA
LGPDDPLRMADESTRRRAWRKHGIKRSPREASPIPDSEGVQIMKRRKPNP
RRLQKSPEIRHRDEGKNAYGQKLKRGRFLPHEDEWILQGIKKYGWGAWKE
IVNEYYRDVDYTRNPVSVKDRARTLDIDPDKYPKHGLRGRPRYFQEGPEE
ANNEEDIDKDEDQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR017930Myb_dom
IPR009057Homeobox-like_sf