Gchil1722.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil1722.t1
Unique NameGchil1722.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length488
Homology
BLAST of Gchil1722.t1 vs. uniprot
Match: A0A2V3IVV4_9FLOR (Pentatricopeptide repeat-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVV4_9FLOR)

HSP 1 Score: 311 bits (797), Expect = 2.300e-97
Identity = 379/480 (78.96%), Postives = 415/480 (86.46%), Query Frame = 0
Query:    4 PSFAPSTFVHKCTRVTPPLCPSRPPPRRARSVSPALLRSSAVAATYNRLSTTPHQHSQQLVHTKASERQWRKQNVFLVNHAQTNGIDSAIEILWQMTTDGKAVTQNYNQVISLLAAANRFSDGLALADEASKRAMANIITFRPLMKHCCATGDGKSAKRVWNLMARYGIEGDMFLYAELMGALIRSDDLLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMYARVGKFEDALVIYREMQQTVQPSIVTYNTLIDGCAHRGDMDQAAQFFDQMVGRGFTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLRGLYNSGGLLESSAKADMLRQVRERGGLLRLQREIKACKT 483
            P+F   TF        P L   +   RR R       R SA AA Y R ST   +         ASER+WR QN FLV+ A+ +G+++AIEILW+MT DG+AVTQNYNQV+SLLA+ +R ++GLALADEA KR +ANIITFRPLMKHCCA GDGK+AKRVWN MAR+G++GDMFLYAELMGAL+RS DL++XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMYARVG+FEDA+ IY+EMQQTVQPSIVTYNTLIDGCAHRGDMD+A +FFD+MV RGFTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   TLRGLY SGG+L +SAKA +LR+VRERGGLLRLQRE+KA KT
Sbjct:    6 PAFLSPTFAPHWAGARPRLVAKQCNLRRKRPHFQTSSRPSATAANYGRTSTHVREDPPDSNRLAASERRWRSQNAFLVSEAEKHGVNAAIEILWRMTKDGEAVTQNYNQVVSLLASEDRLNEGLALADEAGKRGIANIITFRPLMKHCCAKGDGKAAKRVWNTMARHGVDGDMFLYAELMGALVRSQDLMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMYARVGRFEDAMSIYKEMQQTVQPSIVTYNTLIDGCAHRGDMDRAGKFFDEMVERGFTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVETLRGLYKSGGILATSAKAALLREVRERGGLLRLQRELKAAKT 485          
BLAST of Gchil1722.t1 vs. uniprot
Match: A0A1X6NJS9_PORUM (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJS9_PORUM)

HSP 1 Score: 93.6 bits (231), Expect = 4.320e-17
Identity = 147/250 (58.80%), Postives = 173/250 (69.20%), Query Frame = 0
Query:   99 MTTDGKAVTQNYNQVISLLAAANRFSDGLALADEASKRAMANIITFRPLMKHCCATGDGKSAKRVWNLMARYGIEGDMFLYAELMGALIRSDDLLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMYARVGKFEDALVIYREMQQTVQPSIVTYNTLIDGCAHRGDMDQAAQFFDQMVGRGFTP 348
            M   G A  QNYNQ +SLLAA      GLALA   +   +AN+IT+RPLMK+C + GD   A +    M   G+  DMF+YAELM +L+R+  +               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       +F++A+ ++ EM+ TV P+ V      D CAHRGDMD A+ +FD+M+  G  P
Sbjct:    1 MVAAGTAFQQNYNQAVSLLAADGDIEGGLALAATVADVGLANVITYRPLMKYCGSKGDAPHAMQTMAAMRGAGVVPDMFVYAELMSSLVRAGQVADAEGVLREIVADGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFDEAVAMFTEMKVTVTPTKVXXXXXXDACAHRGDMDGASAYFDEMMAVGLQP 250          
BLAST of Gchil1722.t1 vs. uniprot
Match: UPI001E1DCE84 (pentatricopeptide repeat-containing protein At1g51965, mitochondrial-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DCE84)

HSP 1 Score: 84.3 bits (207), Expect = 5.980e-15
Identity = 146/196 (74.49%), Postives = 164/196 (83.67%), Query Frame = 0
Query:  289 KMYARVGKFEDALVIYREMQQTVQPSIVTYNTLIDGCAHRGDMDQAAQFFDQMVGRGFTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLRGLYNSGGLLESSAKADMLRQVRERGGLLRLQREIKACKTV 484
            K+YAR GKF+DAL I++EMQQTVQPS       IDGCAHRGDMD+AA FFD+M+ RG   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     TLR + ++G +++   K  +LR+ RERG  LR QRE+KA +T+
Sbjct:   21 KLYARAGKFQDALDIFQEMQQTVQPSXXXXXXXIDGCAHRGDMDRAALFFDEMLERGMNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAALTTLREMDSNGVIMDPGTKNTLLRETRERGTFLRFQRELKASRTI 216          
The following BLAST results are available for this feature:
BLAST of Gchil1722.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IVV4_9FLOR2.300e-9778.96Pentatricopeptide repeat-containing protein n=1 Ta... [more]
A0A1X6NJS9_PORUM4.320e-1758.80Uncharacterized protein (Fragment) n=1 Tax=Porphyr... [more]
UPI001E1DCE845.980e-1574.49pentatricopeptide repeat-containing protein At1g51... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 352..382
e-value: 3.0E-5
score: 21.9
coord: 142..175
e-value: 8.7E-4
score: 17.3
coord: 316..350
e-value: 8.1E-11
score: 39.4
coord: 283..308
e-value: 1.8E-6
score: 25.7
coord: 212..246
e-value: 6.4E-6
score: 24.0
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 233..291
e-value: 2.4E-11
score: 43.6
coord: 167..221
e-value: 5.6E-4
score: 19.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 313..360
e-value: 6.8E-15
score: 55.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 245..279
score: 9.437737
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 140..174
score: 8.812943
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 314..348
score: 13.515341
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 210..244
score: 10.731171
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 349..383
score: 10.709248
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 280..310
score: 9.865228
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 175..209
score: 8.549871
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 227..482
e-value: 1.4E-47
score: 164.6
coord: 76..226
e-value: 8.4E-20
score: 73.4
NoneNo IPR availablePANTHERPTHR47932ATPASE EXPRESSION PROTEIN 3coord: 170..450
NoneNo IPR availablePANTHERPTHR47932ATPASE EXPRESSION PROTEIN 3coord: 82..298
NoneNo IPR availablePANTHERPTHR47932:SF51PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATEDcoord: 170..450
NoneNo IPR availablePANTHERPTHR47932:SF51PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATEDcoord: 82..298
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 217..415

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1980954..1982537 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1722.t1Gchil1722.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004403_pilon 1980954..1982537 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil1722.t1 ID=Gchil1722.t1|Name=Gchil1722.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=488bp
MACPSFAPSTFVHKCTRVTPPLCPSRPPPRRARSVSPALLRSSAVAATYN
RLSTTPHQHSQQLVHTKASERQWRKQNVFLVNHAQTNGIDSAIEILWQMT
TDGKAVTQNYNQVISLLAAANRFSDGLALADEASKRAMANIITFRPLMKH
CCATGDGKSAKRVWNLMARYGIEGDMFLYAELMGALIRSDDLLAAQKVLD
SLLHSGHRPHIVLYNTLMKGFARKADIRKGFHLFRTIEQSGVKPDETTFN
TLLNVCVRGKDLKAVNKAMALMNKYGVRPGAPTFNTLLKMYARVGKFEDA
LVIYREMQQTVQPSIVTYNTLIDGCAHRGDMDQAAQFFDQMVGRGFTPDI
CTMTSLLKGFGRSRDSEKAIELFEAMKQGGFEIQERTLYAVINACLRGND
RQGARQYIREMMQFGFTVRVRTWVWLLQCDIHADDEKNAVETLRGLYNSG
GLLESSAKADMLRQVRERGGLLRLQREIKACKTVEGV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf