Gchil1722.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1722.t1
Unique NameGchil1722.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length488
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1980954..1982537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ12777
PFAMsPPR,PPR_1,PPR_2,PPR_3
Max annot lvl35493|Streptophyta
Evalue0.000894
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota,37RH1@33090|Viridiplantae,3GGGX@35493|Streptophyta
DescriptionPentatricopeptide repeat-containing protein
COG categoryAT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1722Gchil1722Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1980954..1982537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1722.t1Gchil1722.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1980954..1982537 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1722.t1.start1Gchil1722.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1980954..1980956 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1722.t1.CDS1Gchil1722.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1980954..1981694 +
Gchil1722.t1.CDS2Gchil1722.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1981815..1982537 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1722.t1.exon1Gchil1722.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1980954..1981694 +
Gchil1722.t1.exon2Gchil1722.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1981815..1982537 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1722.t1.intron1Gchil1722.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1981695..1981814 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1722.t1.stop1Gchil1722.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1982535..1982537 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1722.t1 ID=Gchil1722.t1|Name=Gchil1722.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=488bp
MACPSFAPSTFVHKCTRVTPPLCPSRPPPRRARSVSPALLRSSAVAATYN
RLSTTPHQHSQQLVHTKASERQWRKQNVFLVNHAQTNGIDSAIEILWQMT
TDGKAVTQNYNQVISLLAAANRFSDGLALADEASKRAMANIITFRPLMKH
CCATGDGKSAKRVWNLMARYGIEGDMFLYAELMGALIRSDDLLAAQKVLD
SLLHSGHRPHIVLYNTLMKGFARKADIRKGFHLFRTIEQSGVKPDETTFN
TLLNVCVRGKDLKAVNKAMALMNKYGVRPGAPTFNTLLKMYARVGKFEDA
LVIYREMQQTVQPSIVTYNTLIDGCAHRGDMDQAAQFFDQMVGRGFTPDI
CTMTSLLKGFGRSRDSEKAIELFEAMKQGGFEIQERTLYAVINACLRGND
RQGARQYIREMMQFGFTVRVRTWVWLLQCDIHADDEKNAVETLRGLYNSG
GLLESSAKADMLRQVRERGGLLRLQREIKACKTVEGV*
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spliced messenger RNA

>Gchil1722.t1 ID=Gchil1722.t1|Name=Gchil1722.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1464bp|location=Sequence derived from alignment at tig00004403_pilon:1980954..1982537+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTGCCCATCGTTTGCGCCTTCTACTTTTGTCCACAAGTGCACTCG
AGTTACCCCTCCCTTGTGCCCATCTCGTCCCCCGCCGAGAAGAGCGCGGA
GTGTTTCACCTGCTTTGTTGCGCTCTTCCGCTGTGGCAGCAACTTACAAT
CGTTTGTCAACAACACCTCATCAACACTCGCAACAGCTTGTCCATACCAA
AGCATCTGAAAGACAATGGCGAAAGCAGAACGTCTTTCTCGTCAACCACG
CCCAAACCAACGGAATTGATTCCGCTATTGAAATACTGTGGCAAATGACG
ACCGATGGAAAGGCCGTCACGCAGAATTACAACCAAGTTATTAGCCTACT
AGCTGCAGCAAACCGCTTCTCCGACGGGCTCGCCCTCGCCGATGAAGCTA
GCAAGCGCGCCATGGCGAACATCATTACCTTTAGACCACTCATGAAGCAC
TGCTGCGCCACTGGCGATGGAAAATCTGCTAAACGTGTATGGAATCTAAT
GGCGCGCTACGGCATTGAAGGCGATATGTTTTTGTATGCAGAGCTCATGG
GAGCCCTCATACGTTCAGATGACTTGCTTGCAGCTCAGAAAGTGCTGGAT
TCTTTGCTTCACTCTGGTCATCGTCCTCACATTGTTCTGTACAATACGCT
CATGAAAGGATTTGCGAGGAAGGCTGACATTCGCAAAGGATTTCACCTTT
TCCGCACCATTGAACAATCTGGCGTAAAGCCGGACGAAACCACGTTCAAC
ACTTTGCTCAACGTTTGTGTTCGAGGGAAGGACCTAAAGGCCGTCAACAA
GGCCATGGCGCTCATGAATAAGTATGGGGTGAGGCCAGGTGCTCCAACTT
TCAATACGCTTCTAAAGATGTATGCACGAGTTGGCAAATTCGAGGATGCT
TTGGTAATTTATAGAGAGATGCAGCAAACTGTGCAGCCGTCTATCGTCAC
GTATAACACCCTAATAGACGGGTGTGCTCATCGAGGTGATATGGATCAAG
CCGCTCAGTTTTTCGACCAAATGGTTGGCAGGGGATTTACACCCGACATC
TGCACAATGACTTCGCTCTTGAAGGGCTTTGGACGAAGCAGAGATTCAGA
AAAGGCAATAGAATTGTTCGAAGCGATGAAACAGGGCGGATTCGAAATCC
AGGAACGGACACTCTATGCAGTGATTAACGCATGTTTAAGAGGCAATGAT
AGACAAGGTGCGCGCCAATACATCCGAGAAATGATGCAGTTCGGTTTCAC
CGTTCGTGTTCGAACGTGGGTCTGGCTCTTACAGTGCGACATACATGCGG
ATGATGAGAAAAATGCAGTCGAAACGTTGCGAGGGTTATACAACAGTGGG
GGCTTGCTCGAATCTTCGGCAAAAGCAGATATGTTGCGACAAGTTCGAGA
ACGGGGCGGTCTGTTGAGACTTCAACGGGAGATAAAAGCTTGCAAGACGG
TTGAAGGTGTGTGA
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protein sequence of Gchil1722.t1

>Gchil1722.t1 ID=Gchil1722.t1|Name=Gchil1722.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=488bp
MACPSFAPSTFVHKCTRVTPPLCPSRPPPRRARSVSPALLRSSAVAATYN
RLSTTPHQHSQQLVHTKASERQWRKQNVFLVNHAQTNGIDSAIEILWQMT
TDGKAVTQNYNQVISLLAAANRFSDGLALADEASKRAMANIITFRPLMKH
CCATGDGKSAKRVWNLMARYGIEGDMFLYAELMGALIRSDDLLAAQKVLD
SLLHSGHRPHIVLYNTLMKGFARKADIRKGFHLFRTIEQSGVKPDETTFN
TLLNVCVRGKDLKAVNKAMALMNKYGVRPGAPTFNTLLKMYARVGKFEDA
LVIYREMQQTVQPSIVTYNTLIDGCAHRGDMDQAAQFFDQMVGRGFTPDI
CTMTSLLKGFGRSRDSEKAIELFEAMKQGGFEIQERTLYAVINACLRGND
RQGARQYIREMMQFGFTVRVRTWVWLLQCDIHADDEKNAVETLRGLYNSG
GLLESSAKADMLRQVRERGGLLRLQREIKACKTVEGV*
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mRNA from alignment at tig00004403_pilon:1980954..1982537+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1722.t1 ID=Gchil1722.t1|Name=Gchil1722.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1584bp|location=Sequence derived from alignment at tig00004403_pilon:1980954..1982537+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTGCCCATCGTTTGCGCCTTCTACTTTTGTCCACAAGTGCACTCG
AGTTACCCCTCCCTTGTGCCCATCTCGTCCCCCGCCGAGAAGAGCGCGGA
GTGTTTCACCTGCTTTGTTGCGCTCTTCCGCTGTGGCAGCAACTTACAAT
CGTTTGTCAACAACACCTCATCAACACTCGCAACAGCTTGTCCATACCAA
AGCATCTGAAAGACAATGGCGAAAGCAGAACGTCTTTCTCGTCAACCACG
CCCAAACCAACGGAATTGATTCCGCTATTGAAATACTGTGGCAAATGACG
ACCGATGGAAAGGCCGTCACGCAGAATTACAACCAAGTTATTAGCCTACT
AGCTGCAGCAAACCGCTTCTCCGACGGGCTCGCCCTCGCCGATGAAGCTA
GCAAGCGCGCCATGGCGAACATCATTACCTTTAGACCACTCATGAAGCAC
TGCTGCGCCACTGGCGATGGAAAATCTGCTAAACGTGTATGGAATCTAAT
GGCGCGCTACGGCATTGAAGGCGATATGTTTTTGTATGCAGAGCTCATGG
GAGCCCTCATACGTTCAGATGACTTGCTTGCAGCTCAGAAAGTGCTGGAT
TCTTTGCTTCACTCTGGTCATCGTCCTCACATTGTTCTGTACAATACGCT
CATGAAAGGATTTGCGAGGAAGGCTGACATTCGCAAAGGATTTCACCTTT
TCCGCACCATTGAACAATCTGGCGTAAAGCCGGACGAAACCGTACGTGCA
AATCTTCCAATGCGTTGTAAACACTTGAATCATCTATTCCGTTTCGACCA
ACAATTATTCTGACCAATCCTTTGTGTTTTTTTTTTTTATTATTATAATT
CATCGAATCAGACGTTCAACACTTTGCTCAACGTTTGTGTTCGAGGGAAG
GACCTAAAGGCCGTCAACAAGGCCATGGCGCTCATGAATAAGTATGGGGT
GAGGCCAGGTGCTCCAACTTTCAATACGCTTCTAAAGATGTATGCACGAG
TTGGCAAATTCGAGGATGCTTTGGTAATTTATAGAGAGATGCAGCAAACT
GTGCAGCCGTCTATCGTCACGTATAACACCCTAATAGACGGGTGTGCTCA
TCGAGGTGATATGGATCAAGCCGCTCAGTTTTTCGACCAAATGGTTGGCA
GGGGATTTACACCCGACATCTGCACAATGACTTCGCTCTTGAAGGGCTTT
GGACGAAGCAGAGATTCAGAAAAGGCAATAGAATTGTTCGAAGCGATGAA
ACAGGGCGGATTCGAAATCCAGGAACGGACACTCTATGCAGTGATTAACG
CATGTTTAAGAGGCAATGATAGACAAGGTGCGCGCCAATACATCCGAGAA
ATGATGCAGTTCGGTTTCACCGTTCGTGTTCGAACGTGGGTCTGGCTCTT
ACAGTGCGACATACATGCGGATGATGAGAAAAATGCAGTCGAAACGTTGC
GAGGGTTATACAACAGTGGGGGCTTGCTCGAATCTTCGGCAAAAGCAGAT
ATGTTGCGACAAGTTCGAGAACGGGGCGGTCTGTTGAGACTTCAACGGGA
GATAAAAGCTTGCAAGACGGTTGAAGGTGTGTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1980954..1982537+

>Gchil1722.t1 ID=Gchil1722.t1|Name=Gchil1722.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1464bp|location=Sequence derived from alignment at tig00004403_pilon:1980954..1982537+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTGCCCATCGTTTGCGCCTTCTACTTTTGTCCACAAGTGCACTCG
AGTTACCCCTCCCTTGTGCCCATCTCGTCCCCCGCCGAGAAGAGCGCGGA
GTGTTTCACCTGCTTTGTTGCGCTCTTCCGCTGTGGCAGCAACTTACAAT
CGTTTGTCAACAACACCTCATCAACACTCGCAACAGCTTGTCCATACCAA
AGCATCTGAAAGACAATGGCGAAAGCAGAACGTCTTTCTCGTCAACCACG
CCCAAACCAACGGAATTGATTCCGCTATTGAAATACTGTGGCAAATGACG
ACCGATGGAAAGGCCGTCACGCAGAATTACAACCAAGTTATTAGCCTACT
AGCTGCAGCAAACCGCTTCTCCGACGGGCTCGCCCTCGCCGATGAAGCTA
GCAAGCGCGCCATGGCGAACATCATTACCTTTAGACCACTCATGAAGCAC
TGCTGCGCCACTGGCGATGGAAAATCTGCTAAACGTGTATGGAATCTAAT
GGCGCGCTACGGCATTGAAGGCGATATGTTTTTGTATGCAGAGCTCATGG
GAGCCCTCATACGTTCAGATGACTTGCTTGCAGCTCAGAAAGTGCTGGAT
TCTTTGCTTCACTCTGGTCATCGTCCTCACATTGTTCTGTACAATACGCT
CATGAAAGGATTTGCGAGGAAGGCTGACATTCGCAAAGGATTTCACCTTT
TCCGCACCATTGAACAATCTGGCGTAAAGCCGGACGAAACCACGTTCAAC
ACTTTGCTCAACGTTTGTGTTCGAGGGAAGGACCTAAAGGCCGTCAACAA
GGCCATGGCGCTCATGAATAAGTATGGGGTGAGGCCAGGTGCTCCAACTT
TCAATACGCTTCTAAAGATGTATGCACGAGTTGGCAAATTCGAGGATGCT
TTGGTAATTTATAGAGAGATGCAGCAAACTGTGCAGCCGTCTATCGTCAC
GTATAACACCCTAATAGACGGGTGTGCTCATCGAGGTGATATGGATCAAG
CCGCTCAGTTTTTCGACCAAATGGTTGGCAGGGGATTTACACCCGACATC
TGCACAATGACTTCGCTCTTGAAGGGCTTTGGACGAAGCAGAGATTCAGA
AAAGGCAATAGAATTGTTCGAAGCGATGAAACAGGGCGGATTCGAAATCC
AGGAACGGACACTCTATGCAGTGATTAACGCATGTTTAAGAGGCAATGAT
AGACAAGGTGCGCGCCAATACATCCGAGAAATGATGCAGTTCGGTTTCAC
CGTTCGTGTTCGAACGTGGGTCTGGCTCTTACAGTGCGACATACATGCGG
ATGATGAGAAAAATGCAGTCGAAACGTTGCGAGGGTTATACAACAGTGGG
GGCTTGCTCGAATCTTCGGCAAAAGCAGATATGTTGCGACAAGTTCGAGA
ACGGGGCGGTCTGTTGAGACTTCAACGGGAGATAAAAGCTTGCAAGACGG
TTGAAGGTGTGTGA
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