Gchil10464.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil10464.t1
Unique NameGchil10464.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length420
Homology
BLAST of Gchil10464.t1 vs. uniprot
Match: A0A2V3ISL3_9FLOR (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISL3_9FLOR)

HSP 1 Score: 272 bits (695), Expect = 7.070e-84
Identity = 154/329 (46.81%), Postives = 208/329 (63.22%), Query Frame = 0
Query:    1 MNSSQTSLSPPVRAAGPRRNTLLDTRHPPFRPNLLRYFSLNNSAPSNRTVHHNRACPQYIALLTLLLIFTCALYFAISNWR--DMDSSIPRL-KSAQCFLKNGIQIKKGQHISKY-TVQAQVTLSNKTEALEHHTAYYGTSK---PSFSLSEAKKIKTKLEGDLD-DEKLPCWQTE-DSTGRRISLQEITSSSSVYLAWTGTFMAAVIGVILVTVCSSSFNSGWGAASFRDVNLTPPPVAKSLHLTERQALHVCTHF-EDTFCPRTAGEWTCSICLDDDQPSERIKTVVLPCHHRFHTACIKHWLWKGKGLCPLCKWDVRKFIDAEKRA 319
            M++SQTSL P VR A   R       H   R NL+ + +        R     R+CP YIAL TL++IF C+LYFAI+NWR  + D++ P + K  +C +K+ +Q ++ + +S++  V   VT+S +   +    AYYG S+   P  S  EA+K   +L   +    +L CW  + DS   ++SL  IT+S+SVYLAWTGTF+AAV+GV+++TV S+S +   G +  R+  +  PPVAKS+HLTERQAL +C  F +D        +WTCSICLDDD  ++ IKTVVLPC HRFHT CIK WLWKGKG CPLCKWD RKFID EK+A
Sbjct:    1 MSASQTSLQPAVRRASTPRVDSPPRTH--TRRNLVVHPNRGY-----RITRPTRSCPHYIALATLVVIFICSLYFAITNWRGIERDAATPNVWKKRKCTVKSKVQTERKRPLSEFHRVFVNVTVSGRVSKVTK--AYYGPSESKLPDLSEEEAQKRANQLNEQIRIGTELNCWVADADSDNPKVSLTAITTSASVYLAWTGTFLAAVVGVVIITVFSNSTHGPLGVSYLREPLVMAPPVAKSVHLTERQALRICNKFAQDIRAQSCDADWTCSICLDDDYSTDLIKTVVLPCDHRFHTLCIKRWLWKGKGECPLCKWDARKFIDKEKKA 320          
BLAST of Gchil10464.t1 vs. uniprot
Match: A0A2J6RKC7_9HELO (RING-type domain-containing protein n=1 Tax=Hyaloscypha variabilis F TaxID=1149755 RepID=A0A2J6RKC7_9HELO)

HSP 1 Score: 65.1 bits (157), Expect = 1.060e-7
Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 0
Query:  258 GEWTCSICLDDDQPSERIKTVVLPCHHRFHTACIKHWLWKGKGLCPLCKWDVRKFIDA 315
            GE  CSIC +D +  E ++  VLPCHH++H ACI  WL    G CPLC+ D+R    A
Sbjct:  357 GELGCSICTEDFKTGEDVR--VLPCHHKYHPACIDPWLLNVSGTCPLCRHDLRPVTSA 412          
BLAST of Gchil10464.t1 vs. uniprot
Match: A0A2J6T0C5_9HELO (RING-type domain-containing protein n=1 Tax=Hyaloscypha bicolor E TaxID=1095630 RepID=A0A2J6T0C5_9HELO)

HSP 1 Score: 65.1 bits (157), Expect = 1.070e-7
Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 0
Query:  258 GEWTCSICLDDDQPSERIKTVVLPCHHRFHTACIKHWLWKGKGLCPLCKWDVRKFIDA 315
            GE  CSIC +D +  E ++  VLPCHH++H ACI  WL    G CPLC+ D+R    A
Sbjct:  362 GELGCSICTEDFKTGEDVR--VLPCHHKYHPACIDPWLLNVSGTCPLCRHDLRPVTSA 417          
BLAST of Gchil10464.t1 vs. uniprot
Match: A0A2J6QJU5_9HELO (RING-type domain-containing protein n=1 Tax=Hyaloscypha hepaticicola TaxID=2082293 RepID=A0A2J6QJU5_9HELO)

HSP 1 Score: 64.3 bits (155), Expect = 1.870e-7
Identity = 28/58 (48.28%), Postives = 35/58 (60.34%), Query Frame = 0
Query:  258 GEWTCSICLDDDQPSERIKTVVLPCHHRFHTACIKHWLWKGKGLCPLCKWDVRKFIDA 315
            GE  CSIC +D    E ++  VLPCHH++H ACI  WL    G CPLC+ D+R    A
Sbjct:  353 GELGCSICTEDFSMGEDVR--VLPCHHKYHPACIDPWLLNVSGTCPLCRHDLRPVTSA 408          
BLAST of Gchil10464.t1 vs. uniprot
Match: UPI001C5006EE (receptor homology region, transmembrane domain- and RING domain-containing protein 2-like isoform X1 n=2 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C5006EE)

HSP 1 Score: 63.2 bits (152), Expect = 3.880e-7
Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 0
Query:  261 TCSICLDDDQPSERIKTVVLPCHHRFHTACIKHWLWKGKGLCPLCKWDVR 310
            TC+ICL+D    E+++  VLPCHH+FH AC+  WL   +  CP+CK D R
Sbjct:  249 TCAICLEDYSVGEKLR--VLPCHHKFHAACVDSWLTTWRTFCPVCKRDAR 296          
BLAST of Gchil10464.t1 vs. uniprot
Match: UPI00053C4AFB (receptor homology region, transmembrane domain- and RING domain-containing protein 6 isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C4AFB)

HSP 1 Score: 62.8 bits (151), Expect = 5.120e-7
Identity = 33/91 (36.26%), Postives = 53/91 (58.24%), Query Frame = 0
Query:  261 TCSICLDDDQPSERIKTVVLPCHHRFHTACIKHWLWKGKGLCPLCKWDVRKFID----AEKRAAMKDGSADSD----TATTTTMFSSHDAP 343
            TC+IC++D +  ++++  +LPCHH+FH+AC+  WL   +  CP+CK D R        +E+   +  GS+ S     TA+ T + SS D P
Sbjct:  231 TCAICIEDYRVGDKLR--ILPCHHKFHSACVDSWLSMWRSFCPVCKRDARISNSDPPASERTPLLSAGSSPSSSFLLTASRTPLQSSSDLP 319          
BLAST of Gchil10464.t1 vs. uniprot
Match: A0A4Z1L6X6_9HELO (RING-type domain-containing protein n=12 Tax=Sclerotiniaceae TaxID=28983 RepID=A0A4Z1L6X6_9HELO)

HSP 1 Score: 62.0 bits (149), Expect = 1.000e-6
Identity = 26/49 (53.06%), Postives = 32/49 (65.31%), Query Frame = 0
Query:  262 CSICLDDDQPSERIKTVVLPCHHRFHTACIKHWLWKGKGLCPLCKWDVR 310
            CSIC DD    E ++  VLPCHH++H ACI  WL    G CPLC+ D+R
Sbjct:  354 CSICTDDFATGEDVR--VLPCHHKYHPACIDPWLLNVSGTCPLCRHDLR 400          
BLAST of Gchil10464.t1 vs. uniprot
Match: W9CVI9_SCLBF (RING-type domain-containing protein n=1 Tax=Sclerotinia borealis (strain F-4128) TaxID=1432307 RepID=W9CVI9_SCLBF)

HSP 1 Score: 61.2 bits (147), Expect = 1.790e-6
Identity = 27/62 (43.55%), Postives = 36/62 (58.06%), Query Frame = 0
Query:  249 EDTFCPRTAGEWTCSICLDDDQPSERIKTVVLPCHHRFHTACIKHWLWKGKGLCPLCKWDVR 310
            E +  P+      CSIC +D    E ++  VLPCHH++H ACI  WL    G CPLC+ D+R
Sbjct:  349 EASAAPKEGELLQCSICTEDFATGEDVR--VLPCHHKYHPACIDPWLLNVSGTCPLCRHDLR 408          
BLAST of Gchil10464.t1 vs. uniprot
Match: RMR4_ARATH (Receptor homology region, transmembrane domain- and RING domain-containing protein 4 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=RMR4_ARATH)

HSP 1 Score: 60.8 bits (146), Expect = 2.080e-6
Identity = 23/58 (39.66%), Postives = 35/58 (60.34%), Query Frame = 0
Query:  253 CPRTAGEWTCSICLDDDQPSERIKTVVLPCHHRFHTACIKHWLWKGKGLCPLCKWDVR 310
            C        C ICL++ +  ++++  +LPCHH+FH AC+  WL + K  CP+CK D R
Sbjct:  225 CDEATTSILCCICLENYEKGDKLR--ILPCHHKFHVACVDLWLGQRKSFCPVCKRDAR 280          
BLAST of Gchil10464.t1 vs. uniprot
Match: A0A1D9PSY1_SCLS1 (RING-type domain-containing protein n=2 Tax=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) TaxID=665079 RepID=A0A1D9PSY1_SCLS1)

HSP 1 Score: 60.8 bits (146), Expect = 2.370e-6
Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 0
Query:  262 CSICLDDDQPSERIKTVVLPCHHRFHTACIKHWLWKGKGLCPLCKWDVRKFI 313
            CSIC +D    E ++  VLPCHH++H ACI  WL    G CPLC+ D+R  +
Sbjct:  361 CSICTEDFATGEDVR--VLPCHHKYHPACIDPWLLNVSGTCPLCRHDLRPTV 410          
The following BLAST results are available for this feature:
BLAST of Gchil10464.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A2V3ISL3_9FLOR7.070e-8446.81RING-type domain-containing protein n=1 Tax=Gracil... [more]
A0A2J6RKC7_9HELO1.060e-748.28RING-type domain-containing protein n=1 Tax=Hyalos... [more]
A0A2J6T0C5_9HELO1.070e-748.28RING-type domain-containing protein n=1 Tax=Hyalos... [more]
A0A2J6QJU5_9HELO1.870e-748.28RING-type domain-containing protein n=1 Tax=Hyalos... [more]
UPI001C5006EE3.880e-750.00receptor homology region, transmembrane domain- an... [more]
UPI00053C4AFB5.120e-736.26receptor homology region, transmembrane domain- an... [more]
A0A4Z1L6X6_9HELO1.000e-653.06RING-type domain-containing protein n=12 Tax=Scler... [more]
W9CVI9_SCLBF1.790e-643.55RING-type domain-containing protein n=1 Tax=Sclero... [more]
RMR4_ARATH2.080e-639.66Receptor homology region, transmembrane domain- an... [more]
A0A1D9PSY1_SCLS12.370e-648.08RING-type domain-containing protein n=2 Tax=Sclero... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 262..305
e-value: 9.3E-10
score: 48.4
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 261..306
e-value: 4.6E-9
score: 36.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 262..306
score: 12.356501
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 250..321
e-value: 4.0E-13
score: 50.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 324..419
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 326..353
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 356..380
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 401..419
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availablePANTHERPTHR22765RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAININGcoord: 151..347
NoneNo IPR availablePANTHERPTHR22765:SF322E3 UBIQUITIN-PROTEIN LIGASE ZNRF4coord: 151..347
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 207..419
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 78..185
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..58
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 186..206
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 59..77
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 257..312
NoneNo IPR availableTMHMMTMhelixcoord: 55..77
NoneNo IPR availableTMHMMTMhelixcoord: 184..206

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:48472..49822 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10464.t1Gchil10464.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000159_pilon 48472..49822 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil10464.t1 ID=Gchil10464.t1|Name=Gchil10464.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=420bp
MNSSQTSLSPPVRAAGPRRNTLLDTRHPPFRPNLLRYFSLNNSAPSNRTV
HHNRACPQYIALLTLLLIFTCALYFAISNWRDMDSSIPRLKSAQCFLKNG
IQIKKGQHISKYTVQAQVTLSNKTEALEHHTAYYGTSKPSFSLSEAKKIK
TKLEGDLDDEKLPCWQTEDSTGRRISLQEITSSSSVYLAWTGTFMAAVIG
VILVTVCSSSFNSGWGAASFRDVNLTPPPVAKSLHLTERQALHVCTHFED
TFCPRTAGEWTCSICLDDDQPSERIKTVVLPCHHRFHTACIKHWLWKGKG
LCPLCKWDVRKFIDAEKRAAMKDGSADSDTATTTTMFSSHDAPNSQTSIM
LAVEPTPVLTPPPPLPPPPPPLPLSPLLLPTPAPASAAQPRTPNVSHVTI
DTDLLRDEDVRPPRRELRP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD