Gchil10464.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10464.t1
Unique NameGchil10464.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length420
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:48472..49822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005651123.1
PFAMsPA,zf-RING_2
Max annot lvl33090|Viridiplantae
KEGG koko:K15692
GOsGO:0000139,GO:0000209,GO:0000322,GO:0000325,GO:0000326,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005794,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0031090,GO:0031984,GO:0032446,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045786,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:0070647,GO:0071704,GO:0098588,GO:0098791,GO:0140096,GO:1901564
Evalue1.48e-08
EggNOG OGsKOG4628@1|root,KOG4628@2759|Eukaryota,37QFZ@33090|Viridiplantae
EC2.3.2.27
DescriptionReceptor homology region, transmembrane domain- and RING domain-containing protein
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10464Gchil10464Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 48472..49822 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10464.t1Gchil10464.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 48472..49822 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10464.t1.stop1Gchil10464.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 48472..48474 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10464.t1.CDS1Gchil10464.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 48472..48865 -
Gchil10464.t1.CDS2Gchil10464.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 48957..49822 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10464.t1.exon1Gchil10464.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 48472..48865 -
Gchil10464.t1.exon2Gchil10464.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 48957..49822 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10464.t1.intron1Gchil10464.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000159_pilon 48866..48956 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10464.t1.start1Gchil10464.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 49820..49822 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10464.t1 ID=Gchil10464.t1|Name=Gchil10464.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=420bp
MNSSQTSLSPPVRAAGPRRNTLLDTRHPPFRPNLLRYFSLNNSAPSNRTV
HHNRACPQYIALLTLLLIFTCALYFAISNWRDMDSSIPRLKSAQCFLKNG
IQIKKGQHISKYTVQAQVTLSNKTEALEHHTAYYGTSKPSFSLSEAKKIK
TKLEGDLDDEKLPCWQTEDSTGRRISLQEITSSSSVYLAWTGTFMAAVIG
VILVTVCSSSFNSGWGAASFRDVNLTPPPVAKSLHLTERQALHVCTHFED
TFCPRTAGEWTCSICLDDDQPSERIKTVVLPCHHRFHTACIKHWLWKGKG
LCPLCKWDVRKFIDAEKRAAMKDGSADSDTATTTTMFSSHDAPNSQTSIM
LAVEPTPVLTPPPPLPPPPPPLPLSPLLLPTPAPASAAQPRTPNVSHVTI
DTDLLRDEDVRPPRRELRP*
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spliced messenger RNA

>Gchil10464.t1 ID=Gchil10464.t1|Name=Gchil10464.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00000159_pilon:48472..49822- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTCTTCACAAACTTCTCTGAGCCCGCCCGTCCGCGCCGCCGGTCC
CCGTCGTAATACGCTTCTCGACACTCGCCATCCCCCTTTTCGCCCCAACC
TGCTCCGCTACTTCTCCCTAAACAACAGCGCTCCCTCTAATCGAACCGTG
CACCACAACCGCGCCTGTCCGCAGTACATTGCGCTGCTAACTTTGCTTCT
AATCTTCACCTGTGCCTTATACTTCGCCATCTCCAACTGGCGTGACATGG
ACTCCTCCATTCCGCGATTGAAATCCGCTCAGTGTTTCCTCAAAAATGGT
ATCCAGATTAAGAAGGGCCAACACATTTCGAAGTATACCGTGCAAGCTCA
AGTCACCCTATCGAACAAGACCGAGGCCTTAGAGCACCACACCGCGTACT
ATGGAACCTCCAAGCCATCCTTCTCGCTCTCGGAGGCCAAAAAGATCAAA
ACGAAGCTCGAAGGAGACCTCGACGATGAGAAGCTGCCCTGTTGGCAAAC
AGAGGATTCTACAGGCCGCCGCATCTCATTGCAAGAAATCACTTCGTCGT
CCTCCGTGTACCTCGCATGGACCGGCACCTTTATGGCCGCCGTCATTGGC
GTCATTCTTGTCACTGTGTGCTCCAGTTCGTTCAACTCAGGCTGGGGTGC
TGCCTCTTTCAGAGATGTGAATCTTACGCCACCACCCGTCGCTAAGAGCC
TCCACCTCACAGAACGTCAGGCGCTTCATGTTTGTACACACTTTGAAGAC
ACCTTTTGCCCGCGCACGGCTGGTGAGTGGACCTGTTCTATCTGTCTTGA
TGATGATCAGCCTAGCGAGCGGATAAAGACAGTAGTGCTACCCTGTCACC
ATCGATTTCACACAGCCTGCATCAAGCACTGGTTGTGGAAAGGCAAAGGC
CTGTGCCCGTTGTGCAAGTGGGACGTGCGCAAGTTCATCGACGCCGAAAA
ACGGGCCGCGATGAAAGATGGTTCCGCCGATTCAGATACGGCCACCACCA
CAACCATGTTTTCGTCGCACGACGCACCGAACTCTCAAACCAGTATAATG
CTGGCGGTGGAACCCACGCCCGTACTCACGCCGCCGCCACCGCTGCCACC
GCCGCCACCACCGCTACCGCTGTCACCACTGCTGCTGCCAACGCCAGCGC
CAGCGTCTGCTGCTCAGCCGCGAACTCCCAATGTGTCGCACGTCACCATC
GACACCGACCTATTGCGCGACGAAGACGTTCGGCCGCCGCGTCGTGAGCT
GCGGCCCTAG
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protein sequence of Gchil10464.t1

>Gchil10464.t1 ID=Gchil10464.t1|Name=Gchil10464.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=420bp
MNSSQTSLSPPVRAAGPRRNTLLDTRHPPFRPNLLRYFSLNNSAPSNRTV
HHNRACPQYIALLTLLLIFTCALYFAISNWRDMDSSIPRLKSAQCFLKNG
IQIKKGQHISKYTVQAQVTLSNKTEALEHHTAYYGTSKPSFSLSEAKKIK
TKLEGDLDDEKLPCWQTEDSTGRRISLQEITSSSSVYLAWTGTFMAAVIG
VILVTVCSSSFNSGWGAASFRDVNLTPPPVAKSLHLTERQALHVCTHFED
TFCPRTAGEWTCSICLDDDQPSERIKTVVLPCHHRFHTACIKHWLWKGKG
LCPLCKWDVRKFIDAEKRAAMKDGSADSDTATTTTMFSSHDAPNSQTSIM
LAVEPTPVLTPPPPLPPPPPPLPLSPLLLPTPAPASAAQPRTPNVSHVTI
DTDLLRDEDVRPPRRELRP*
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mRNA from alignment at tig00000159_pilon:48472..49822-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10464.t1 ID=Gchil10464.t1|Name=Gchil10464.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1351bp|location=Sequence derived from alignment at tig00000159_pilon:48472..49822- (Gracilaria chilensis NLEC103_M9 male)
ATGAATTCTTCACAAACTTCTCTGAGCCCGCCCGTCCGCGCCGCCGGTCC
CCGTCGTAATACGCTTCTCGACACTCGCCATCCCCCTTTTCGCCCCAACC
TGCTCCGCTACTTCTCCCTAAACAACAGCGCTCCCTCTAATCGAACCGTG
CACCACAACCGCGCCTGTCCGCAGTACATTGCGCTGCTAACTTTGCTTCT
AATCTTCACCTGTGCCTTATACTTCGCCATCTCCAACTGGCGTGACATGG
ACTCCTCCATTCCGCGATTGAAATCCGCTCAGTGTTTCCTCAAAAATGGT
ATCCAGATTAAGAAGGGCCAACACATTTCGAAGTATACCGTGCAAGCTCA
AGTCACCCTATCGAACAAGACCGAGGCCTTAGAGCACCACACCGCGTACT
ATGGAACCTCCAAGCCATCCTTCTCGCTCTCGGAGGCCAAAAAGATCAAA
ACGAAGCTCGAAGGAGACCTCGACGATGAGAAGCTGCCCTGTTGGCAAAC
AGAGGATTCTACAGGCCGCCGCATCTCATTGCAAGAAATCACTTCGTCGT
CCTCCGTGTACCTCGCATGGACCGGCACCTTTATGGCCGCCGTCATTGGC
GTCATTCTTGTCACTGTGTGCTCCAGTTCGTTCAACTCAGGCTGGGGTGC
TGCCTCTTTCAGAGATGTGAATCTTACGCCACCACCCGTCGCTAAGAGCC
TCCACCTCACAGAACGTCAGGCGCTTCATGTTTGTACACACTTTGAAGAC
ACCTTTTGCCCGCGCACGGCTGGTGAGTGGACCTGTTCTATCTGTCTTGA
TGATGATCAGCCTAGCGAGCGGATAAAGACAGTAGTGCTACCCTGTCACC
ATCGATTTCACACAGCGTACGTACATTCCACATTGATGTACACTTTAACT
CTATCACAAGTTTTTTTTGCCTACTAACCATTGCCCGTGTTCCCATCCCC
AAAACAGCTGCATCAAGCACTGGTTGTGGAAAGGCAAAGGCCTGTGCCCG
TTGTGCAAGTGGGACGTGCGCAAGTTCATCGACGCCGAAAAACGGGCCGC
GATGAAAGATGGTTCCGCCGATTCAGATACGGCCACCACCACAACCATGT
TTTCGTCGCACGACGCACCGAACTCTCAAACCAGTATAATGCTGGCGGTG
GAACCCACGCCCGTACTCACGCCGCCGCCACCGCTGCCACCGCCGCCACC
ACCGCTACCGCTGTCACCACTGCTGCTGCCAACGCCAGCGCCAGCGTCTG
CTGCTCAGCCGCGAACTCCCAATGTGTCGCACGTCACCATCGACACCGAC
CTATTGCGCGACGAAGACGTTCGGCCGCCGCGTCGTGAGCTGCGGCCCTA
G
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Coding sequence (CDS) from alignment at tig00000159_pilon:48472..49822-

>Gchil10464.t1 ID=Gchil10464.t1|Name=Gchil10464.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1260bp|location=Sequence derived from alignment at tig00000159_pilon:48472..49822- (Gracilaria chilensis NLEC103_M9 male)
ATGAATTCTTCACAAACTTCTCTGAGCCCGCCCGTCCGCGCCGCCGGTCC
CCGTCGTAATACGCTTCTCGACACTCGCCATCCCCCTTTTCGCCCCAACC
TGCTCCGCTACTTCTCCCTAAACAACAGCGCTCCCTCTAATCGAACCGTG
CACCACAACCGCGCCTGTCCGCAGTACATTGCGCTGCTAACTTTGCTTCT
AATCTTCACCTGTGCCTTATACTTCGCCATCTCCAACTGGCGTGACATGG
ACTCCTCCATTCCGCGATTGAAATCCGCTCAGTGTTTCCTCAAAAATGGT
ATCCAGATTAAGAAGGGCCAACACATTTCGAAGTATACCGTGCAAGCTCA
AGTCACCCTATCGAACAAGACCGAGGCCTTAGAGCACCACACCGCGTACT
ATGGAACCTCCAAGCCATCCTTCTCGCTCTCGGAGGCCAAAAAGATCAAA
ACGAAGCTCGAAGGAGACCTCGACGATGAGAAGCTGCCCTGTTGGCAAAC
AGAGGATTCTACAGGCCGCCGCATCTCATTGCAAGAAATCACTTCGTCGT
CCTCCGTGTACCTCGCATGGACCGGCACCTTTATGGCCGCCGTCATTGGC
GTCATTCTTGTCACTGTGTGCTCCAGTTCGTTCAACTCAGGCTGGGGTGC
TGCCTCTTTCAGAGATGTGAATCTTACGCCACCACCCGTCGCTAAGAGCC
TCCACCTCACAGAACGTCAGGCGCTTCATGTTTGTACACACTTTGAAGAC
ACCTTTTGCCCGCGCACGGCTGGTGAGTGGACCTGTTCTATCTGTCTTGA
TGATGATCAGCCTAGCGAGCGGATAAAGACAGTAGTGCTACCCTGTCACC
ATCGATTTCACACAGCCTGCATCAAGCACTGGTTGTGGAAAGGCAAAGGC
CTGTGCCCGTTGTGCAAGTGGGACGTGCGCAAGTTCATCGACGCCGAAAA
ACGGGCCGCGATGAAAGATGGTTCCGCCGATTCAGATACGGCCACCACCA
CAACCATGTTTTCGTCGCACGACGCACCGAACTCTCAAACCAGTATAATG
CTGGCGGTGGAACCCACGCCCGTACTCACGCCGCCGCCACCGCTGCCACC
GCCGCCACCACCGCTACCGCTGTCACCACTGCTGCTGCCAACGCCAGCGC
CAGCGTCTGCTGCTCAGCCGCGAACTCCCAATGTGTCGCACGTCACCATC
GACACCGACCTATTGCGCGACGAAGACGTTCGGCCGCCGCGTCGTGAGCT
GCGGCCCTAG
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