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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 55529.EKX42449 |
Preferred name | MTF1 |
PFAMs | Formyl_trans_C,Formyl_trans_N |
Max annot lvl | 2759|Eukaryota |
KEGG rclass | RC00026,RC00165 |
KEGG ko | ko:K00604 |
KEGG Reaction | R03940 |
KEGG Pathway | ko00670,ko00970,map00670,map00970 |
Evalue | 4.44e-64 |
EggNOG OGs | COG0223@1|root,KOG3082@2759|Eukaryota |
EC | 2.1.2.9 |
Description | methionyl-tRNA formyltransferase activity |
COG category | J |
BRITE | ko00000,ko00001,ko01000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil9974.t1 ID=Gchil9974.t1|Name=Gchil9974.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=228bp MPKFGTLNIHPSLLPEYRGAAPVPRALEAGVQKTGVSILYTVLKMDAGPV VAVKERPLHGEEQAPELLDELFGSGVESLLEMLPSVWNGTVKMTEQDESR VSHAAKLSKEESRLSFTENAVLIHNKVRAFAGWPGTWADFVLGDGDEAEE IRLKIGKSVVLRKEGGVSLGIHKVAFDSEDQTLVITCGDGSRLGLLQVQP PGKRMMDAASFWNGLRGQSLQRKRLPY* back to topspliced messenger RNA >Gchil9974.t1 ID=Gchil9974.t1|Name=Gchil9974.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00004442_pilon:75141..75824+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCCAAAGTTTGGCACTCTTAACATTCACCCAAGCCTCTTGCCTGAATA TCGCGGAGCTGCTCCAGTTCCTCGTGCGTTAGAAGCTGGCGTGCAGAAGA CTGGAGTGTCCATTCTGTACACTGTTCTCAAGATGGATGCTGGGCCTGTC GTTGCGGTCAAGGAAAGACCCCTTCATGGTGAAGAACAGGCACCAGAATT ATTAGATGAGCTATTCGGGTCTGGGGTCGAATCGTTGTTAGAAATGTTGC CAAGTGTTTGGAACGGAACTGTGAAGATGACTGAACAGGACGAAAGCCGA GTAAGTCATGCAGCAAAACTATCCAAAGAAGAATCAAGGCTGAGTTTTAC GGAGAACGCAGTTTTAATACATAACAAGGTGCGTGCTTTTGCCGGTTGGC CAGGTACATGGGCTGACTTCGTCTTAGGTGACGGTGACGAGGCTGAAGAG ATTCGACTGAAGATTGGAAAGAGTGTCGTCCTACGAAAGGAAGGAGGTGT CTCTCTTGGGATACACAAGGTCGCCTTCGATTCAGAAGATCAGACTTTGG TAATCACCTGTGGTGATGGTAGTCGTCTCGGGTTGCTTCAAGTTCAGCCG CCGGGCAAGAGAATGATGGACGCTGCAAGCTTCTGGAACGGGCTAAGAGG GCAGTCGCTTCAAAGGAAGCGGCTCCCCTACTGA back to topprotein sequence of Gchil9974.t1 >Gchil9974.t1 ID=Gchil9974.t1|Name=Gchil9974.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=228bp
MPKFGTLNIHPSLLPEYRGAAPVPRALEAGVQKTGVSILYTVLKMDAGPV VAVKERPLHGEEQAPELLDELFGSGVESLLEMLPSVWNGTVKMTEQDESR VSHAAKLSKEESRLSFTENAVLIHNKVRAFAGWPGTWADFVLGDGDEAEE IRLKIGKSVVLRKEGGVSLGIHKVAFDSEDQTLVITCGDGSRLGLLQVQP PGKRMMDAASFWNGLRGQSLQRKRLPY* back to topmRNA from alignment at tig00004442_pilon:75141..75824+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil9974.t1 ID=Gchil9974.t1|Name=Gchil9974.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00004442_pilon:75141..75824+ (Gracilaria chilensis NLEC103_M9 male) ATGCCAAAGTTTGGCACTCTTAACATTCACCCAAGCCTCTTGCCTGAATA
TCGCGGAGCTGCTCCAGTTCCTCGTGCGTTAGAAGCTGGCGTGCAGAAGA
CTGGAGTGTCCATTCTGTACACTGTTCTCAAGATGGATGCTGGGCCTGTC
GTTGCGGTCAAGGAAAGACCCCTTCATGGTGAAGAACAGGCACCAGAATT
ATTAGATGAGCTATTCGGGTCTGGGGTCGAATCGTTGTTAGAAATGTTGC
CAAGTGTTTGGAACGGAACTGTGAAGATGACTGAACAGGACGAAAGCCGA
GTAAGTCATGCAGCAAAACTATCCAAAGAAGAATCAAGGCTGAGTTTTAC
GGAGAACGCAGTTTTAATACATAACAAGGTGCGTGCTTTTGCCGGTTGGC
CAGGTACATGGGCTGACTTCGTCTTAGGTGACGGTGACGAGGCTGAAGAG
ATTCGACTGAAGATTGGAAAGAGTGTCGTCCTACGAAAGGAAGGAGGTGT
CTCTCTTGGGATACACAAGGTCGCCTTCGATTCAGAAGATCAGACTTTGG
TAATCACCTGTGGTGATGGTAGTCGTCTCGGGTTGCTTCAAGTTCAGCCG
CCGGGCAAGAGAATGATGGACGCTGCAAGCTTCTGGAACGGGCTAAGAGG
GCAGTCGCTTCAAAGGAAGCGGCTCCCCTACTGA back to topCoding sequence (CDS) from alignment at tig00004442_pilon:75141..75824+ >Gchil9974.t1 ID=Gchil9974.t1|Name=Gchil9974.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=684bp|location=Sequence derived from alignment at tig00004442_pilon:75141..75824+ (Gracilaria chilensis NLEC103_M9 male) ATGCCAAAGTTTGGCACTCTTAACATTCACCCAAGCCTCTTGCCTGAATA TCGCGGAGCTGCTCCAGTTCCTCGTGCGTTAGAAGCTGGCGTGCAGAAGA CTGGAGTGTCCATTCTGTACACTGTTCTCAAGATGGATGCTGGGCCTGTC GTTGCGGTCAAGGAAAGACCCCTTCATGGTGAAGAACAGGCACCAGAATT ATTAGATGAGCTATTCGGGTCTGGGGTCGAATCGTTGTTAGAAATGTTGC CAAGTGTTTGGAACGGAACTGTGAAGATGACTGAACAGGACGAAAGCCGA GTAAGTCATGCAGCAAAACTATCCAAAGAAGAATCAAGGCTGAGTTTTAC GGAGAACGCAGTTTTAATACATAACAAGGTGCGTGCTTTTGCCGGTTGGC CAGGTACATGGGCTGACTTCGTCTTAGGTGACGGTGACGAGGCTGAAGAG ATTCGACTGAAGATTGGAAAGAGTGTCGTCCTACGAAAGGAAGGAGGTGT CTCTCTTGGGATACACAAGGTCGCCTTCGATTCAGAAGATCAGACTTTGG TAATCACCTGTGGTGATGGTAGTCGTCTCGGGTTGCTTCAAGTTCAGCCG CCGGGCAAGAGAATGATGGACGCTGCAAGCTTCTGGAACGGGCTAAGAGG GCAGTCGCTTCAAAGGAAGCGGCTCCCCTACTGA back to top
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