Gchil9974.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9974.t1
Unique NameGchil9974.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:75141..75824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX42449
Preferred nameMTF1
PFAMsFormyl_trans_C,Formyl_trans_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00026,RC00165
KEGG koko:K00604
KEGG ReactionR03940
KEGG Pathwayko00670,ko00970,map00670,map00970
Evalue4.44e-64
EggNOG OGsCOG0223@1|root,KOG3082@2759|Eukaryota
EC2.1.2.9
Descriptionmethionyl-tRNA formyltransferase activity
COG categoryJ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9974Gchil9974Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 75141..75824 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9974.t1.start1Gchil9974.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 75141..75143 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9974.t1.CDS1Gchil9974.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 75141..75824 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9974.t1.exon1Gchil9974.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 75141..75824 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9974.t1.stop1Gchil9974.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 75822..75824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9974.t1Gchil9974.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 75141..75824 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9974.t1 ID=Gchil9974.t1|Name=Gchil9974.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=228bp
MPKFGTLNIHPSLLPEYRGAAPVPRALEAGVQKTGVSILYTVLKMDAGPV
VAVKERPLHGEEQAPELLDELFGSGVESLLEMLPSVWNGTVKMTEQDESR
VSHAAKLSKEESRLSFTENAVLIHNKVRAFAGWPGTWADFVLGDGDEAEE
IRLKIGKSVVLRKEGGVSLGIHKVAFDSEDQTLVITCGDGSRLGLLQVQP
PGKRMMDAASFWNGLRGQSLQRKRLPY*
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spliced messenger RNA

>Gchil9974.t1 ID=Gchil9974.t1|Name=Gchil9974.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00004442_pilon:75141..75824+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAAAGTTTGGCACTCTTAACATTCACCCAAGCCTCTTGCCTGAATA
TCGCGGAGCTGCTCCAGTTCCTCGTGCGTTAGAAGCTGGCGTGCAGAAGA
CTGGAGTGTCCATTCTGTACACTGTTCTCAAGATGGATGCTGGGCCTGTC
GTTGCGGTCAAGGAAAGACCCCTTCATGGTGAAGAACAGGCACCAGAATT
ATTAGATGAGCTATTCGGGTCTGGGGTCGAATCGTTGTTAGAAATGTTGC
CAAGTGTTTGGAACGGAACTGTGAAGATGACTGAACAGGACGAAAGCCGA
GTAAGTCATGCAGCAAAACTATCCAAAGAAGAATCAAGGCTGAGTTTTAC
GGAGAACGCAGTTTTAATACATAACAAGGTGCGTGCTTTTGCCGGTTGGC
CAGGTACATGGGCTGACTTCGTCTTAGGTGACGGTGACGAGGCTGAAGAG
ATTCGACTGAAGATTGGAAAGAGTGTCGTCCTACGAAAGGAAGGAGGTGT
CTCTCTTGGGATACACAAGGTCGCCTTCGATTCAGAAGATCAGACTTTGG
TAATCACCTGTGGTGATGGTAGTCGTCTCGGGTTGCTTCAAGTTCAGCCG
CCGGGCAAGAGAATGATGGACGCTGCAAGCTTCTGGAACGGGCTAAGAGG
GCAGTCGCTTCAAAGGAAGCGGCTCCCCTACTGA
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protein sequence of Gchil9974.t1

>Gchil9974.t1 ID=Gchil9974.t1|Name=Gchil9974.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=228bp
MPKFGTLNIHPSLLPEYRGAAPVPRALEAGVQKTGVSILYTVLKMDAGPV
VAVKERPLHGEEQAPELLDELFGSGVESLLEMLPSVWNGTVKMTEQDESR
VSHAAKLSKEESRLSFTENAVLIHNKVRAFAGWPGTWADFVLGDGDEAEE
IRLKIGKSVVLRKEGGVSLGIHKVAFDSEDQTLVITCGDGSRLGLLQVQP
PGKRMMDAASFWNGLRGQSLQRKRLPY*
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mRNA from alignment at tig00004442_pilon:75141..75824+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9974.t1 ID=Gchil9974.t1|Name=Gchil9974.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00004442_pilon:75141..75824+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCAAAGTTTGGCACTCTTAACATTCACCCAAGCCTCTTGCCTGAATA
TCGCGGAGCTGCTCCAGTTCCTCGTGCGTTAGAAGCTGGCGTGCAGAAGA
CTGGAGTGTCCATTCTGTACACTGTTCTCAAGATGGATGCTGGGCCTGTC
GTTGCGGTCAAGGAAAGACCCCTTCATGGTGAAGAACAGGCACCAGAATT
ATTAGATGAGCTATTCGGGTCTGGGGTCGAATCGTTGTTAGAAATGTTGC
CAAGTGTTTGGAACGGAACTGTGAAGATGACTGAACAGGACGAAAGCCGA
GTAAGTCATGCAGCAAAACTATCCAAAGAAGAATCAAGGCTGAGTTTTAC
GGAGAACGCAGTTTTAATACATAACAAGGTGCGTGCTTTTGCCGGTTGGC
CAGGTACATGGGCTGACTTCGTCTTAGGTGACGGTGACGAGGCTGAAGAG
ATTCGACTGAAGATTGGAAAGAGTGTCGTCCTACGAAAGGAAGGAGGTGT
CTCTCTTGGGATACACAAGGTCGCCTTCGATTCAGAAGATCAGACTTTGG
TAATCACCTGTGGTGATGGTAGTCGTCTCGGGTTGCTTCAAGTTCAGCCG
CCGGGCAAGAGAATGATGGACGCTGCAAGCTTCTGGAACGGGCTAAGAGG
GCAGTCGCTTCAAAGGAAGCGGCTCCCCTACTGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:75141..75824+

>Gchil9974.t1 ID=Gchil9974.t1|Name=Gchil9974.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=684bp|location=Sequence derived from alignment at tig00004442_pilon:75141..75824+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCAAAGTTTGGCACTCTTAACATTCACCCAAGCCTCTTGCCTGAATA
TCGCGGAGCTGCTCCAGTTCCTCGTGCGTTAGAAGCTGGCGTGCAGAAGA
CTGGAGTGTCCATTCTGTACACTGTTCTCAAGATGGATGCTGGGCCTGTC
GTTGCGGTCAAGGAAAGACCCCTTCATGGTGAAGAACAGGCACCAGAATT
ATTAGATGAGCTATTCGGGTCTGGGGTCGAATCGTTGTTAGAAATGTTGC
CAAGTGTTTGGAACGGAACTGTGAAGATGACTGAACAGGACGAAAGCCGA
GTAAGTCATGCAGCAAAACTATCCAAAGAAGAATCAAGGCTGAGTTTTAC
GGAGAACGCAGTTTTAATACATAACAAGGTGCGTGCTTTTGCCGGTTGGC
CAGGTACATGGGCTGACTTCGTCTTAGGTGACGGTGACGAGGCTGAAGAG
ATTCGACTGAAGATTGGAAAGAGTGTCGTCCTACGAAAGGAAGGAGGTGT
CTCTCTTGGGATACACAAGGTCGCCTTCGATTCAGAAGATCAGACTTTGG
TAATCACCTGTGGTGATGGTAGTCGTCTCGGGTTGCTTCAAGTTCAGCCG
CCGGGCAAGAGAATGATGGACGCTGCAAGCTTCTGGAACGGGCTAAGAGG
GCAGTCGCTTCAAAGGAAGCGGCTCCCCTACTGA
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