Gchil903.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil903.t1
Unique NameGchil903.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:1158060..1158725 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7719.XP_002124654.1
Preferred nameANTXR2
PFAMsAnt_C,Anth_Ig,VWA
Max annot lvl33208|Metazoa
KEGG koko:K20909
KEGG Pathwayko04621,map04621
GOsGO:0000003,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005783,GO:0005789,GO:0005886,GO:0006810,GO:0008150,GO:0009897,GO:0009986,GO:0010008,GO:0012505,GO:0016020,GO:0016021,GO:0022414,GO:0031090,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0071944,GO:0097708,GO:0098552,GO:0098588,GO:0098805,GO:0098827,GO:1901998
Evalue0.00033
EggNOG OGs28K64@1|root,2QT7Y@2759|Eukaryota,38F7I@33154|Opisthokonta,3BDAH@33208|Metazoa,3D06D@33213|Bilateria,484AS@7711|Chordata
Descriptiontoxin transport
COG categoryT
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil903Gchil903Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 1158060..1158725 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil903.t1.stop1Gchil903.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 1158060..1158062 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil903.t1.CDS1Gchil903.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 1158060..1158725 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil903.t1.exon1Gchil903.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 1158060..1158725 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil903.t1.start1Gchil903.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 1158723..1158725 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil903.t1Gchil903.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 1158060..1158725 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil903.t1 ID=Gchil903.t1|Name=Gchil903.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=222bp
MDIRTPFFTTLALLVVLFSVSNSEQNAQNRPSLVQRKASCETKLCFALDG
SGSISGLFELQQSFVISLVRAIHSTVKPLQLAAVQYGVDNQPISPLTNDT
AKFVKLVNQTSFNKSSSTFIRGGIVYCDFELTSTGPEVGTIIVLGDGRGN
FGGDPVRSANIFRKIRGRVAAVGVGNIDKASLEEIVGGDSSLVFKLLRSN
LLDEVVCAILDRICPSASLCD*
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spliced messenger RNA

>Gchil903.t1 ID=Gchil903.t1|Name=Gchil903.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000017_pilon:1158060..1158725- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATTCGCACCCCCTTTTTCACCACTCTTGCTCTCTTGGTTGTTCT
TTTCAGTGTCTCAAACTCGGAACAGAATGCCCAAAATCGCCCTTCTCTCG
TCCAAAGGAAAGCTTCCTGTGAAACAAAACTATGCTTCGCGCTTGACGGC
AGTGGTTCAATTTCAGGACTTTTTGAGCTGCAGCAAAGTTTCGTAATCAG
CTTGGTCAGAGCTATCCATTCTACCGTGAAACCTTTGCAGCTTGCCGCAG
TTCAATATGGTGTGGACAATCAGCCGATCAGCCCGTTAACGAATGATACG
GCCAAGTTCGTTAAGTTGGTTAATCAGACCTCGTTTAACAAGTCCTCCTC
TACCTTTATCCGCGGCGGCATTGTGTACTGCGACTTTGAACTCACATCTA
CCGGCCCGGAGGTCGGCACCATAATTGTACTCGGAGATGGTCGCGGCAAC
TTTGGTGGAGACCCAGTACGAAGTGCCAATATATTCAGAAAAATTAGAGG
CAGAGTTGCGGCCGTTGGTGTGGGCAACATCGACAAGGCCAGCCTGGAAG
AAATCGTTGGTGGTGATTCATCTCTTGTTTTCAAGCTGTTGAGGTCTAAC
CTCTTGGATGAAGTGGTTTGTGCCATTCTCGATCGTATTTGCCCCTCTGC
TTCGCTTTGTGACTGA
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protein sequence of Gchil903.t1

>Gchil903.t1 ID=Gchil903.t1|Name=Gchil903.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=222bp
MDIRTPFFTTLALLVVLFSVSNSEQNAQNRPSLVQRKASCETKLCFALDG
SGSISGLFELQQSFVISLVRAIHSTVKPLQLAAVQYGVDNQPISPLTNDT
AKFVKLVNQTSFNKSSSTFIRGGIVYCDFELTSTGPEVGTIIVLGDGRGN
FGGDPVRSANIFRKIRGRVAAVGVGNIDKASLEEIVGGDSSLVFKLLRSN
LLDEVVCAILDRICPSASLCD*
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mRNA from alignment at tig00000017_pilon:1158060..1158725-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil903.t1 ID=Gchil903.t1|Name=Gchil903.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000017_pilon:1158060..1158725- (Gracilaria chilensis NLEC103_M9 male)
ATGGACATTCGCACCCCCTTTTTCACCACTCTTGCTCTCTTGGTTGTTCT
TTTCAGTGTCTCAAACTCGGAACAGAATGCCCAAAATCGCCCTTCTCTCG
TCCAAAGGAAAGCTTCCTGTGAAACAAAACTATGCTTCGCGCTTGACGGC
AGTGGTTCAATTTCAGGACTTTTTGAGCTGCAGCAAAGTTTCGTAATCAG
CTTGGTCAGAGCTATCCATTCTACCGTGAAACCTTTGCAGCTTGCCGCAG
TTCAATATGGTGTGGACAATCAGCCGATCAGCCCGTTAACGAATGATACG
GCCAAGTTCGTTAAGTTGGTTAATCAGACCTCGTTTAACAAGTCCTCCTC
TACCTTTATCCGCGGCGGCATTGTGTACTGCGACTTTGAACTCACATCTA
CCGGCCCGGAGGTCGGCACCATAATTGTACTCGGAGATGGTCGCGGCAAC
TTTGGTGGAGACCCAGTACGAAGTGCCAATATATTCAGAAAAATTAGAGG
CAGAGTTGCGGCCGTTGGTGTGGGCAACATCGACAAGGCCAGCCTGGAAG
AAATCGTTGGTGGTGATTCATCTCTTGTTTTCAAGCTGTTGAGGTCTAAC
CTCTTGGATGAAGTGGTTTGTGCCATTCTCGATCGTATTTGCCCCTCTGC
TTCGCTTTGTGACTGA
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Coding sequence (CDS) from alignment at tig00000017_pilon:1158060..1158725-

>Gchil903.t1 ID=Gchil903.t1|Name=Gchil903.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=666bp|location=Sequence derived from alignment at tig00000017_pilon:1158060..1158725- (Gracilaria chilensis NLEC103_M9 male)
ATGGACATTCGCACCCCCTTTTTCACCACTCTTGCTCTCTTGGTTGTTCT
TTTCAGTGTCTCAAACTCGGAACAGAATGCCCAAAATCGCCCTTCTCTCG
TCCAAAGGAAAGCTTCCTGTGAAACAAAACTATGCTTCGCGCTTGACGGC
AGTGGTTCAATTTCAGGACTTTTTGAGCTGCAGCAAAGTTTCGTAATCAG
CTTGGTCAGAGCTATCCATTCTACCGTGAAACCTTTGCAGCTTGCCGCAG
TTCAATATGGTGTGGACAATCAGCCGATCAGCCCGTTAACGAATGATACG
GCCAAGTTCGTTAAGTTGGTTAATCAGACCTCGTTTAACAAGTCCTCCTC
TACCTTTATCCGCGGCGGCATTGTGTACTGCGACTTTGAACTCACATCTA
CCGGCCCGGAGGTCGGCACCATAATTGTACTCGGAGATGGTCGCGGCAAC
TTTGGTGGAGACCCAGTACGAAGTGCCAATATATTCAGAAAAATTAGAGG
CAGAGTTGCGGCCGTTGGTGTGGGCAACATCGACAAGGCCAGCCTGGAAG
AAATCGTTGGTGGTGATTCATCTCTTGTTTTCAAGCTGTTGAGGTCTAAC
CTCTTGGATGAAGTGGTTTGTGCCATTCTCGATCGTATTTGCCCCTCTGC
TTCGCTTTGTGACTGA
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