Gchil903.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil903.t1
Unique NameGchil903.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length222
Homology
BLAST of Gchil903.t1 vs. uniprot
Match: A0A2V3IQR0_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQR0_9FLOR)

HSP 1 Score: 85.1 bits (209), Expect = 1.960e-16
Identity = 61/185 (32.97%), Postives = 97/185 (52.43%), Query Frame = 0
Query:   34 VQRKASCETKLCFALDGSGSIS-GLFELQQSFVISLVRAIHSTVKPLQLAAVQYGVDNQPISPLTNDTAKFVKLVNQTSFNKSSSTFIRGGIVYCDFELTSTGPEV--GTIIVLGDGRGNFGGDPVRSANIFRKIRG-RVAAVGVGNIDKASLEEIVGGDSSLVFKLLRSNLLDEVVCAILDRIC 214
            + R   C+++ CFA+DGS SIS   F+ Q+  V  L+ +  +     + +AVQYG+ N+PIS  T++  +F+  +       +S TFI  GI  C   +     E   GTI VLGDG+ NF    +    +  +++  R+ AVG GN++++ LE I G D   VF L        ++ ++L  IC
Sbjct:   64 IVRHGKCDSRSCFAIDGSASISPSAFQFQKDLV-KLLASFAALDDEAEFSAVQYGLANRPISLETSNITEFLTSLETAKQANASRTFIGAGIATCIRRIRRGEAESAKGTIFVLGDGQANFALGFLDE--VLAEVKDERLVAVGFGNVNRSLLETIAGTDQDSVFLLPSYADFHIIIYSLLLNIC 245          
BLAST of Gchil903.t1 vs. uniprot
Match: R7Q5C2_CHOCR (VWFA domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5C2_CHOCR)

HSP 1 Score: 84.0 bits (206), Expect = 6.200e-16
Identity = 64/191 (33.51%), Postives = 98/191 (51.31%), Query Frame = 0
Query:   34 VQRKASCETKLCFALDGSGSISGLFELQQSFVISLVRAIHSTVKPLQLAAVQYGVDNQPISPLTNDTAKFVKLVNQTSFNKSSSTFIRGGIVYCDFELTSTGPEVG--TIIVLGDGRGNFGGDPV-------RSANIFRKIRGRVAAVGVGN-IDKASLEEIVGGDSSLVFKLLRSNLLDEVVCAILDRIC 214
            V R  SC+  LCFALDGSGSIS      Q  ++ L+ AI +       +AVQYG+ N+ IS  T+D   F+K V+ +   ++  TF+  G+ +C  ++    P+ G   ++VLGDGR N+    +        S +IF        AVG+GN +D   L EI GG  + V+       + +VV  ++  +C
Sbjct:   72 VCRDGSCDISLCFALDGSGSISAEEYQVQKDLVKLI-AILAAPANATFSAVQYGLANEFISVSTSDPFAFMKYVDNSVLLRAPRTFLTAGLGFCISQVNEN-PKAGGKKVVVLGDGRDNYMESSLALVLKSAESVDIF--------AVGIGNSLDTQKLLEITGGQKNHVYTASNYADVGQVVVDLVRALC 252          
BLAST of Gchil903.t1 vs. uniprot
Match: A0A2V3ID60_9FLOR (Cartilage matrix protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID60_9FLOR)

HSP 1 Score: 83.2 bits (204), Expect = 6.250e-16
Identity = 61/197 (30.96%), Postives = 91/197 (46.19%), Query Frame = 0
Query:    3 IRTPFFTTLALLVVLFSVSNSEQNAQNRPSLVQRKASCETKLCFALDGSGSISGL-FELQQSFVISLVRAIHSTVKPLQLAAVQYGVDNQPISPLTNDTAKFVKLVNQTSFNKSSSTFIRGGIVYCDFELTSTGPEVGTIIVLGDGRGNFGGDPVRSANIFRKIR--GRVAAVGVGNIDKASLEEIVGGDSSLVFKL 196
            + + F  +L   +   S  N     Q    +V+R   C   +CFALDGS S++ L +E+Q+ FV  +   +   V+    +AVQYG    PISPLT     F   V+ ++ +    + I  GI YC  +L         IIV GDGR     D V  A  F+     GR++ VGVG  +   L+ I       +F++
Sbjct:    8 VLSVFAVSLVTAIPFESNMNMRMRLQGVRRMVERNG-CNLNVCFALDGSASVTPLDYEMQKDFVQLMSAVLDFEVENSSFSAVQYGDQVSPISPLTQSIDDFNLKVHASNISAFQGSSIGKGITYCSNQLLELADNPVKIIVFGDGRETSKTDAVSIAASFKDFHPNGRLSTVGVGFPNTVLLKTIAEAGGGRLFEI 203          
BLAST of Gchil903.t1 vs. uniprot
Match: A0A2V3ISA4_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISA4_9FLOR)

HSP 1 Score: 79.3 bits (194), Expect = 2.330e-14
Identity = 70/234 (29.91%), Postives = 105/234 (44.87%), Query Frame = 0
Query:    3 IRTPFFTTLALLVVLFSV----------SNSEQNAQNRPSL-----VQRKASCETKLCFALDGSGSISG-LFELQQSFVISLVRAIHSTVKPLQLAAVQYGVDNQPISPLTNDTAKFVKLVNQTSFNKSSSTFIRGGIVYCDFELTSTGPEVGTIIVLGDGRGNFGG------DPVRSANIFRKIRGRVAAVGVGNIDKASLEEIVGGDSSLVFKLLRSNLLDEVVCAILDRIC 214
            I   FF   A   V F+V          S     A NR  +     +  +  CE  LCFA+DGS SI+   F+LQ  FV +L+  + S  +    +A+QYG+  + +S  T D A F+  V  T   +S  TFI  GI  C  +      +   II+LGDGR  F         P  +A    +    + AVGV + D   L E + GD   VF +     + +V+  +++++C
Sbjct:    2 IARTFFLCCAFFAVCFAVVPEARIEALNSPLTTGAANRAQIDRALEIVEETGCEPNLCFAIDGSSSITDDEFQLQLDFV-ALITGLVSLDEQSGYSAIQYGLRPKFMSRFTQDAAAFLLKVEGTRQLRSVRTFIAPGIGGCMRQFRRVRGQANKIILLGDGRSTFDSRDPPLDPPSIAAQFLAEPNNSICAVGV-SFDTTELLEEITGDPDRVFSVADWMSVVDVLADLVEQVC 233          
BLAST of Gchil903.t1 vs. uniprot
Match: R7Q3A9_CHOCR (VWFA domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3A9_CHOCR)

HSP 1 Score: 74.7 bits (182), Expect = 1.270e-12
Identity = 49/122 (40.16%), Postives = 69/122 (56.56%), Query Frame = 0
Query:   34 VQRKASCETKLCFALDGSGSISGL-FELQQSFVISLVRAIHSTVKP--LQLAAVQYGVDNQPISPLTNDTAKFVKLVNQTSFNKSSSTFIRGGIVYCDFELTSTGPEVGT-IIVLGDGRGNF 151
            V R   C  +LCFALDGSGSIS + F++QQ     LV+ + S  +      +AVQYG+ N  IS  T +  KF + V+ + F ++  TFI  G+ +C   L +     G  I++LGDGR NF
Sbjct:   59 VNRGRRCNMRLCFALDGSGSISPVQFKVQQD----LVKLLASVAREGGATFSAVQYGLSNTAISTPTGNAPKFRRAVDDSIFQRAPRTFIGSGLGFCISNLKTEPRGRGRRILLLGDGRSNF 176          
The following BLAST results are available for this feature:
BLAST of Gchil903.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IQR0_9FLOR1.960e-1632.97VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
R7Q5C2_CHOCR6.200e-1633.51VWFA domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A2V3ID60_9FLOR6.250e-1630.96Cartilage matrix protein n=1 Tax=Gracilariopsis ch... [more]
A0A2V3ISA4_9FLOR2.330e-1429.91VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
R7Q3A9_CHOCR1.270e-1240.16VWFA domain-containing protein n=1 Tax=Chondrus cr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 41..214
e-value: 3.0E-11
score: 53.4
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 44..200
e-value: 8.1E-15
score: 55.5
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 43..213
score: 13.739744
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 30..218
e-value: 2.2E-20
score: 75.2
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 39..215
NoneNo IPR availablePIRSRPIRSR038023-1PIRSR038023-1coord: 14..214
e-value: 4.9E-10
score: 36.7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..221
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
NoneNo IPR availableCDDcd01450vWFA_subfamily_ECMcoord: 46..194
e-value: 1.6664E-13
score: 63.8498

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:1158060..1158725 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil903.t1Gchil903.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000017_pilon 1158060..1158725 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil903.t1 ID=Gchil903.t1|Name=Gchil903.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=222bp
MDIRTPFFTTLALLVVLFSVSNSEQNAQNRPSLVQRKASCETKLCFALDG
SGSISGLFELQQSFVISLVRAIHSTVKPLQLAAVQYGVDNQPISPLTNDT
AKFVKLVNQTSFNKSSSTFIRGGIVYCDFELTSTGPEVGTIIVLGDGRGN
FGGDPVRSANIFRKIRGRVAAVGVGNIDKASLEEIVGGDSSLVFKLLRSN
LLDEVVCAILDRICPSASLCD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR036465vWFA_dom_sf