Gchil5233.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5233.t1
Unique NameGchil5233.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:107956..108855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMJ105CT
PFAMsTic22
Max annot lvl2759|Eukaryota
Evalue1.26e-69
EggNOG OGs2DZXZ@1|root,2S7E9@2759|Eukaryota
DescriptionTic22-like family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5233Gchil5233Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 107956..108855 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5233.t1.stop1Gchil5233.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 107956..107958 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5233.t1.CDS1Gchil5233.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 107956..108855 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5233.t1.exon1Gchil5233.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 107956..108855 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5233.t1.start1Gchil5233.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 108853..108855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5233.t1Gchil5233.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 107956..108855 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5233.t1 ID=Gchil5233.t1|Name=Gchil5233.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=300bp
MSASRHDSVSYNDSCPNAFPWRSIAISTTAATLATIVTPILQTSFQSPQT
SIASTATLVQPALAAAKFSKKTVSEKLSQVPVFAVTNASGQPYLAKMDGS
GSQIGLIFFSHHDALNMLKDMKKNPGASDARVYIMGLDKAYEMVKAKPTP
SGIRGSGGEEMTMVFRFYPDSKQVKAAEGLQRKMRLSSSVQGVPVFVAKG
LTLRKGNENIVPLFLTKEDLDASWEKLRETNKDLPNSAPVVVGNLLYIIQ
QMENDEQPELKNLGFFAPRASVEYVSKEQAGPTGQARLHQNPVNPQQSK*
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spliced messenger RNA

>Gchil5233.t1 ID=Gchil5233.t1|Name=Gchil5233.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00004418_pilon:107956..108855- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCTTCTCGCCATGACTCTGTGTCCTACAACGATTCATGTCCAAA
TGCCTTTCCATGGCGCTCGATAGCTATTTCCACTACTGCCGCTACGCTGG
CAACCATTGTCACCCCAATTCTTCAAACTTCCTTTCAATCTCCACAAACT
TCAATCGCCTCCACTGCAACTCTCGTTCAACCTGCTCTCGCCGCCGCTAA
GTTCTCCAAGAAAACCGTATCTGAAAAGCTGTCTCAGGTTCCAGTCTTTG
CTGTCACCAATGCATCGGGCCAGCCATATCTCGCCAAGATGGACGGTTCT
GGAAGTCAGATCGGTCTTATTTTTTTTTCTCATCATGACGCTTTAAACAT
GTTGAAGGACATGAAAAAGAATCCTGGTGCATCCGATGCACGCGTTTACA
TTATGGGTTTGGACAAGGCCTATGAGATGGTTAAAGCAAAACCTACACCC
TCCGGTATTCGTGGTTCTGGTGGAGAGGAAATGACAATGGTCTTTCGGTT
TTATCCTGATTCTAAACAAGTCAAGGCTGCAGAAGGTTTGCAACGAAAGA
TGAGGCTCTCTTCTTCTGTCCAAGGCGTACCGGTATTTGTAGCAAAGGGA
CTTACACTGAGAAAGGGTAATGAAAATATTGTTCCTCTGTTTCTAACGAA
GGAAGATCTGGATGCGTCGTGGGAAAAGTTGAGGGAGACCAACAAGGACT
TGCCCAACAGTGCCCCTGTGGTTGTAGGAAATTTGCTGTACATTATCCAA
CAGATGGAAAATGATGAGCAACCAGAGTTGAAGAACTTGGGTTTCTTTGC
GCCTCGAGCTTCTGTTGAATATGTTTCCAAAGAACAGGCTGGTCCCACGG
GTCAGGCAAGGCTGCATCAGAATCCTGTGAATCCTCAACAAAGCAAGTGA
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protein sequence of Gchil5233.t1

>Gchil5233.t1 ID=Gchil5233.t1|Name=Gchil5233.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=300bp
MSASRHDSVSYNDSCPNAFPWRSIAISTTAATLATIVTPILQTSFQSPQT
SIASTATLVQPALAAAKFSKKTVSEKLSQVPVFAVTNASGQPYLAKMDGS
GSQIGLIFFSHHDALNMLKDMKKNPGASDARVYIMGLDKAYEMVKAKPTP
SGIRGSGGEEMTMVFRFYPDSKQVKAAEGLQRKMRLSSSVQGVPVFVAKG
LTLRKGNENIVPLFLTKEDLDASWEKLRETNKDLPNSAPVVVGNLLYIIQ
QMENDEQPELKNLGFFAPRASVEYVSKEQAGPTGQARLHQNPVNPQQSK*
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mRNA from alignment at tig00004418_pilon:107956..108855-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5233.t1 ID=Gchil5233.t1|Name=Gchil5233.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00004418_pilon:107956..108855- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGCTTCTCGCCATGACTCTGTGTCCTACAACGATTCATGTCCAAA
TGCCTTTCCATGGCGCTCGATAGCTATTTCCACTACTGCCGCTACGCTGG
CAACCATTGTCACCCCAATTCTTCAAACTTCCTTTCAATCTCCACAAACT
TCAATCGCCTCCACTGCAACTCTCGTTCAACCTGCTCTCGCCGCCGCTAA
GTTCTCCAAGAAAACCGTATCTGAAAAGCTGTCTCAGGTTCCAGTCTTTG
CTGTCACCAATGCATCGGGCCAGCCATATCTCGCCAAGATGGACGGTTCT
GGAAGTCAGATCGGTCTTATTTTTTTTTCTCATCATGACGCTTTAAACAT
GTTGAAGGACATGAAAAAGAATCCTGGTGCATCCGATGCACGCGTTTACA
TTATGGGTTTGGACAAGGCCTATGAGATGGTTAAAGCAAAACCTACACCC
TCCGGTATTCGTGGTTCTGGTGGAGAGGAAATGACAATGGTCTTTCGGTT
TTATCCTGATTCTAAACAAGTCAAGGCTGCAGAAGGTTTGCAACGAAAGA
TGAGGCTCTCTTCTTCTGTCCAAGGCGTACCGGTATTTGTAGCAAAGGGA
CTTACACTGAGAAAGGGTAATGAAAATATTGTTCCTCTGTTTCTAACGAA
GGAAGATCTGGATGCGTCGTGGGAAAAGTTGAGGGAGACCAACAAGGACT
TGCCCAACAGTGCCCCTGTGGTTGTAGGAAATTTGCTGTACATTATCCAA
CAGATGGAAAATGATGAGCAACCAGAGTTGAAGAACTTGGGTTTCTTTGC
GCCTCGAGCTTCTGTTGAATATGTTTCCAAAGAACAGGCTGGTCCCACGG
GTCAGGCAAGGCTGCATCAGAATCCTGTGAATCCTCAACAAAGCAAGTGA
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Coding sequence (CDS) from alignment at tig00004418_pilon:107956..108855-

>Gchil5233.t1 ID=Gchil5233.t1|Name=Gchil5233.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=900bp|location=Sequence derived from alignment at tig00004418_pilon:107956..108855- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGCTTCTCGCCATGACTCTGTGTCCTACAACGATTCATGTCCAAA
TGCCTTTCCATGGCGCTCGATAGCTATTTCCACTACTGCCGCTACGCTGG
CAACCATTGTCACCCCAATTCTTCAAACTTCCTTTCAATCTCCACAAACT
TCAATCGCCTCCACTGCAACTCTCGTTCAACCTGCTCTCGCCGCCGCTAA
GTTCTCCAAGAAAACCGTATCTGAAAAGCTGTCTCAGGTTCCAGTCTTTG
CTGTCACCAATGCATCGGGCCAGCCATATCTCGCCAAGATGGACGGTTCT
GGAAGTCAGATCGGTCTTATTTTTTTTTCTCATCATGACGCTTTAAACAT
GTTGAAGGACATGAAAAAGAATCCTGGTGCATCCGATGCACGCGTTTACA
TTATGGGTTTGGACAAGGCCTATGAGATGGTTAAAGCAAAACCTACACCC
TCCGGTATTCGTGGTTCTGGTGGAGAGGAAATGACAATGGTCTTTCGGTT
TTATCCTGATTCTAAACAAGTCAAGGCTGCAGAAGGTTTGCAACGAAAGA
TGAGGCTCTCTTCTTCTGTCCAAGGCGTACCGGTATTTGTAGCAAAGGGA
CTTACACTGAGAAAGGGTAATGAAAATATTGTTCCTCTGTTTCTAACGAA
GGAAGATCTGGATGCGTCGTGGGAAAAGTTGAGGGAGACCAACAAGGACT
TGCCCAACAGTGCCCCTGTGGTTGTAGGAAATTTGCTGTACATTATCCAA
CAGATGGAAAATGATGAGCAACCAGAGTTGAAGAACTTGGGTTTCTTTGC
GCCTCGAGCTTCTGTTGAATATGTTTCCAAAGAACAGGCTGGTCCCACGG
GTCAGGCAAGGCTGCATCAGAATCCTGTGAATCCTCAACAAAGCAAGTGA
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