Gchil2406.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2406.t1
Unique NameGchil2406.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:668886..669527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog185453.XP_006869425.1
Preferred namePTPLB
PFAMsPTPLA
Max annot lvl33208|Metazoa
KEGG rclassRC00770,RC01095
KEGG koko:K10703
KEGG ReactionR07760,R10827
KEGG Pathwayko00062,ko01040,ko01110,ko01212,map00062,map01040,map01110,map01212
KEGG ModuleM00415
GOsGO:0000038,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006631,GO:0006633,GO:0006637,GO:0006643,GO:0006665,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0018812,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0019899,GO:0030148,GO:0030176,GO:0030497,GO:0031224,GO:0031227,GO:0031984,GO:0032787,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035336,GO:0035337,GO:0035338,GO:0035383,GO:0035384,GO:0042175,GO:0042761,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046390,GO:0046394,GO:0046467,GO:0046483,GO:0046949,GO:0051186,GO:0051188,GO:0055086,GO:0071616,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0080023,GO:0090407,GO:0098827,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901576
Evalue1.42e-34
EggNOG OGsCOG5198@1|root,KOG3187@2759|Eukaryota,38E6D@33154|Opisthokonta,3BAFA@33208|Metazoa,3CZWF@33213|Bilateria,4823Z@7711|Chordata,48ZNB@7742|Vertebrata,3J8S2@40674|Mammalia,34TPU@311790|Afrotheria
EC4.2.1.134
DescriptionVery-long-chain (3R)-3-hydroxyacyl- acyl-carrier protein dehydratase 2
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2406Gchil2406Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 668886..669527 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2406.t1.stop1Gchil2406.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 668886..668888 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2406.t1.CDS1Gchil2406.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 668886..669527 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2406.t1.exon1Gchil2406.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 668886..669527 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2406.t1.start1Gchil2406.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 669525..669527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2406.t1Gchil2406.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 668886..669527 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2406.t1 ID=Gchil2406.t1|Name=Gchil2406.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=214bp
MPWKTSYLMAYNVVQLSLWAVTAIQLIISSKTASGYLEVYESAATFAITA
QTLAWAEVIHAGLGLGGTVSTAFVQCLGRYVVLIFVIDAITQIQDRLVTM
ILLVSWVLADLVRYAFYIATIIRRVPPALLWMRYSLFLVLYPAGIVAEWM
IYYWTLPYVESHKLYNVSLPNEFNFSFDFGIWNRIVLILYMYFGPFMFFH
MLHQRKKKLVAAN*
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spliced messenger RNA

>Gchil2406.t1 ID=Gchil2406.t1|Name=Gchil2406.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00004400_pilon:668886..669527- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTGGAAGACTTCATACTTAATGGCTTACAACGTTGTACAGCTGAG
CCTCTGGGCTGTGACGGCCATTCAACTCATCATATCATCCAAAACAGCGT
CCGGCTACTTAGAAGTGTACGAATCTGCAGCTACATTTGCCATCACTGCG
CAAACTTTAGCGTGGGCCGAAGTAATTCATGCAGGCTTGGGTCTGGGCGG
AACGGTTTCCACAGCATTTGTTCAATGTCTTGGTCGCTACGTCGTGCTTA
TTTTTGTCATTGACGCCATCACGCAAATTCAAGATCGTCTAGTTACAATG
ATTCTCCTGGTTTCGTGGGTTCTAGCCGACTTGGTGCGCTACGCGTTCTA
CATCGCTACCATTATCCGTCGTGTGCCCCCTGCTTTACTCTGGATGAGAT
ACTCTCTTTTCCTTGTGTTGTATCCGGCGGGCATCGTCGCGGAATGGATG
ATATACTATTGGACTCTGCCCTATGTGGAAAGTCACAAACTTTACAATGT
TTCTCTCCCTAATGAGTTCAACTTTTCGTTTGACTTTGGCATATGGAATC
GAATTGTGCTAATATTGTACATGTACTTTGGACCGTTCATGTTTTTCCAC
ATGCTACACCAACGTAAAAAGAAACTGGTCGCTGCAAACTAG
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protein sequence of Gchil2406.t1

>Gchil2406.t1 ID=Gchil2406.t1|Name=Gchil2406.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=214bp
MPWKTSYLMAYNVVQLSLWAVTAIQLIISSKTASGYLEVYESAATFAITA
QTLAWAEVIHAGLGLGGTVSTAFVQCLGRYVVLIFVIDAITQIQDRLVTM
ILLVSWVLADLVRYAFYIATIIRRVPPALLWMRYSLFLVLYPAGIVAEWM
IYYWTLPYVESHKLYNVSLPNEFNFSFDFGIWNRIVLILYMYFGPFMFFH
MLHQRKKKLVAAN*
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mRNA from alignment at tig00004400_pilon:668886..669527-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2406.t1 ID=Gchil2406.t1|Name=Gchil2406.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00004400_pilon:668886..669527- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTTGGAAGACTTCATACTTAATGGCTTACAACGTTGTACAGCTGAG
CCTCTGGGCTGTGACGGCCATTCAACTCATCATATCATCCAAAACAGCGT
CCGGCTACTTAGAAGTGTACGAATCTGCAGCTACATTTGCCATCACTGCG
CAAACTTTAGCGTGGGCCGAAGTAATTCATGCAGGCTTGGGTCTGGGCGG
AACGGTTTCCACAGCATTTGTTCAATGTCTTGGTCGCTACGTCGTGCTTA
TTTTTGTCATTGACGCCATCACGCAAATTCAAGATCGTCTAGTTACAATG
ATTCTCCTGGTTTCGTGGGTTCTAGCCGACTTGGTGCGCTACGCGTTCTA
CATCGCTACCATTATCCGTCGTGTGCCCCCTGCTTTACTCTGGATGAGAT
ACTCTCTTTTCCTTGTGTTGTATCCGGCGGGCATCGTCGCGGAATGGATG
ATATACTATTGGACTCTGCCCTATGTGGAAAGTCACAAACTTTACAATGT
TTCTCTCCCTAATGAGTTCAACTTTTCGTTTGACTTTGGCATATGGAATC
GAATTGTGCTAATATTGTACATGTACTTTGGACCGTTCATGTTTTTCCAC
ATGCTACACCAACGTAAAAAGAAACTGGTCGCTGCAAACTAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:668886..669527-

>Gchil2406.t1 ID=Gchil2406.t1|Name=Gchil2406.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=642bp|location=Sequence derived from alignment at tig00004400_pilon:668886..669527- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTTGGAAGACTTCATACTTAATGGCTTACAACGTTGTACAGCTGAG
CCTCTGGGCTGTGACGGCCATTCAACTCATCATATCATCCAAAACAGCGT
CCGGCTACTTAGAAGTGTACGAATCTGCAGCTACATTTGCCATCACTGCG
CAAACTTTAGCGTGGGCCGAAGTAATTCATGCAGGCTTGGGTCTGGGCGG
AACGGTTTCCACAGCATTTGTTCAATGTCTTGGTCGCTACGTCGTGCTTA
TTTTTGTCATTGACGCCATCACGCAAATTCAAGATCGTCTAGTTACAATG
ATTCTCCTGGTTTCGTGGGTTCTAGCCGACTTGGTGCGCTACGCGTTCTA
CATCGCTACCATTATCCGTCGTGTGCCCCCTGCTTTACTCTGGATGAGAT
ACTCTCTTTTCCTTGTGTTGTATCCGGCGGGCATCGTCGCGGAATGGATG
ATATACTATTGGACTCTGCCCTATGTGGAAAGTCACAAACTTTACAATGT
TTCTCTCCCTAATGAGTTCAACTTTTCGTTTGACTTTGGCATATGGAATC
GAATTGTGCTAATATTGTACATGTACTTTGGACCGTTCATGTTTTTCCAC
ATGCTACACCAACGTAAAAAGAAACTGGTCGCTGCAAACTAG
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