Gchil2393.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2393.t1
Unique NameGchil2393.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length344
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:380684..381715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX36269
PFAMsRibosomal_L2,Ribosomal_L2_C
Max annot lvl2759|Eukaryota
Evalue2.63e-105
EggNOG OGsCOG0090@1|root,KOG0438@2759|Eukaryota
Descriptionstructural constituent of ribosome
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2393Gchil2393Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 380684..381715 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2393.t1.start1Gchil2393.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 380684..380686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2393.t1.CDS1Gchil2393.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 380684..381715 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2393.t1.exon1Gchil2393.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 380684..381715 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2393.t1.stop1Gchil2393.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 381713..381715 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2393.t1Gchil2393.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 380684..381715 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2393.t1 ID=Gchil2393.t1|Name=Gchil2393.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=344bp
MSYSLPTLSRWLYPRHRGVPNTLLPTPLHRHPKALGTFHGTIRRFCDITC
PRVIQRKPTTPSNRHTALTDKSKLYKGRPHPRLSVGLPKRAGRSRITGRI
TVRHQGGGNKRMYRIIDFKRSAWESIPGVVQRIEYDPNRSALIALVRHQK
KCPAVKKKQRPDHFAYIICPTGLQIGQTVVASRQTPVDVKVGNAMTLKHV
PVGTVVHNIELRPGHGAQMCRSAGTSARVLERDESKGLALLRLQSKEQRL
VRLSCMVSVGQVSNPEHKNQSFGKAGRMRWKGIRPTVRGVAMNPIDHPHG
GGEGKTSGGRPSVSKWGKPTKGHRTRNKRKQSGKYILKRRFDK*
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spliced messenger RNA

>Gchil2393.t1 ID=Gchil2393.t1|Name=Gchil2393.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at tig00004400_pilon:380684..381715+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTACTCTCTCCCCACCCTCTCCCGATGGCTCTACCCCCGCCACCG
TGGCGTCCCCAATACCCTTCTTCCCACGCCATTGCACCGCCACCCAAAGG
CGTTGGGCACGTTTCATGGCACGATCCGCAGATTCTGCGACATAACTTGT
CCGAGAGTCATCCAACGCAAGCCAACAACCCCGTCCAATCGCCACACCGC
TCTCACCGATAAGTCCAAACTATATAAAGGACGCCCCCATCCACGCCTTT
CAGTCGGTCTCCCAAAGCGTGCCGGTCGATCGCGAATAACCGGCCGGATC
ACCGTACGCCATCAAGGCGGTGGAAACAAGCGTATGTACAGAATCATTGA
CTTTAAGCGAAGCGCGTGGGAGAGCATCCCCGGCGTGGTTCAGCGCATTG
AATATGATCCGAATCGCAGCGCGCTCATCGCGCTTGTGCGCCATCAGAAG
AAGTGCCCGGCAGTGAAGAAGAAACAAAGGCCGGATCATTTTGCCTACAT
CATCTGTCCGACGGGCTTGCAGATCGGACAGACTGTTGTGGCAAGTCGCC
AAACACCAGTTGACGTCAAGGTTGGAAACGCCATGACGCTGAAACACGTT
CCAGTAGGCACAGTCGTGCACAACATAGAGCTTCGACCGGGGCATGGGGC
GCAGATGTGTCGTTCCGCAGGAACCAGTGCGCGTGTCCTTGAGCGAGATG
AATCGAAGGGGTTGGCACTTCTCAGGCTTCAAAGCAAGGAGCAACGGCTG
GTCCGACTGTCGTGCATGGTGTCAGTAGGGCAAGTGAGCAACCCTGAACA
TAAGAATCAGAGCTTTGGAAAGGCGGGACGAATGAGGTGGAAAGGCATCC
GTCCTACAGTCCGCGGTGTTGCTATGAACCCAATTGATCACCCGCACGGT
GGAGGTGAAGGTAAGACTAGCGGTGGTCGCCCTTCGGTTTCAAAGTGGGG
CAAACCAACAAAAGGACATCGCACGAGGAACAAACGAAAACAAAGTGGCA
AGTACATCTTAAAACGCCGATTCGATAAGTAA
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protein sequence of Gchil2393.t1

>Gchil2393.t1 ID=Gchil2393.t1|Name=Gchil2393.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=344bp
MSYSLPTLSRWLYPRHRGVPNTLLPTPLHRHPKALGTFHGTIRRFCDITC
PRVIQRKPTTPSNRHTALTDKSKLYKGRPHPRLSVGLPKRAGRSRITGRI
TVRHQGGGNKRMYRIIDFKRSAWESIPGVVQRIEYDPNRSALIALVRHQK
KCPAVKKKQRPDHFAYIICPTGLQIGQTVVASRQTPVDVKVGNAMTLKHV
PVGTVVHNIELRPGHGAQMCRSAGTSARVLERDESKGLALLRLQSKEQRL
VRLSCMVSVGQVSNPEHKNQSFGKAGRMRWKGIRPTVRGVAMNPIDHPHG
GGEGKTSGGRPSVSKWGKPTKGHRTRNKRKQSGKYILKRRFDK*
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mRNA from alignment at tig00004400_pilon:380684..381715+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2393.t1 ID=Gchil2393.t1|Name=Gchil2393.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at tig00004400_pilon:380684..381715+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCTACTCTCTCCCCACCCTCTCCCGATGGCTCTACCCCCGCCACCG
TGGCGTCCCCAATACCCTTCTTCCCACGCCATTGCACCGCCACCCAAAGG
CGTTGGGCACGTTTCATGGCACGATCCGCAGATTCTGCGACATAACTTGT
CCGAGAGTCATCCAACGCAAGCCAACAACCCCGTCCAATCGCCACACCGC
TCTCACCGATAAGTCCAAACTATATAAAGGACGCCCCCATCCACGCCTTT
CAGTCGGTCTCCCAAAGCGTGCCGGTCGATCGCGAATAACCGGCCGGATC
ACCGTACGCCATCAAGGCGGTGGAAACAAGCGTATGTACAGAATCATTGA
CTTTAAGCGAAGCGCGTGGGAGAGCATCCCCGGCGTGGTTCAGCGCATTG
AATATGATCCGAATCGCAGCGCGCTCATCGCGCTTGTGCGCCATCAGAAG
AAGTGCCCGGCAGTGAAGAAGAAACAAAGGCCGGATCATTTTGCCTACAT
CATCTGTCCGACGGGCTTGCAGATCGGACAGACTGTTGTGGCAAGTCGCC
AAACACCAGTTGACGTCAAGGTTGGAAACGCCATGACGCTGAAACACGTT
CCAGTAGGCACAGTCGTGCACAACATAGAGCTTCGACCGGGGCATGGGGC
GCAGATGTGTCGTTCCGCAGGAACCAGTGCGCGTGTCCTTGAGCGAGATG
AATCGAAGGGGTTGGCACTTCTCAGGCTTCAAAGCAAGGAGCAACGGCTG
GTCCGACTGTCGTGCATGGTGTCAGTAGGGCAAGTGAGCAACCCTGAACA
TAAGAATCAGAGCTTTGGAAAGGCGGGACGAATGAGGTGGAAAGGCATCC
GTCCTACAGTCCGCGGTGTTGCTATGAACCCAATTGATCACCCGCACGGT
GGAGGTGAAGGTAAGACTAGCGGTGGTCGCCCTTCGGTTTCAAAGTGGGG
CAAACCAACAAAAGGACATCGCACGAGGAACAAACGAAAACAAAGTGGCA
AGTACATCTTAAAACGCCGATTCGATAAGTAA
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Coding sequence (CDS) from alignment at tig00004400_pilon:380684..381715+

>Gchil2393.t1 ID=Gchil2393.t1|Name=Gchil2393.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1032bp|location=Sequence derived from alignment at tig00004400_pilon:380684..381715+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCTACTCTCTCCCCACCCTCTCCCGATGGCTCTACCCCCGCCACCG
TGGCGTCCCCAATACCCTTCTTCCCACGCCATTGCACCGCCACCCAAAGG
CGTTGGGCACGTTTCATGGCACGATCCGCAGATTCTGCGACATAACTTGT
CCGAGAGTCATCCAACGCAAGCCAACAACCCCGTCCAATCGCCACACCGC
TCTCACCGATAAGTCCAAACTATATAAAGGACGCCCCCATCCACGCCTTT
CAGTCGGTCTCCCAAAGCGTGCCGGTCGATCGCGAATAACCGGCCGGATC
ACCGTACGCCATCAAGGCGGTGGAAACAAGCGTATGTACAGAATCATTGA
CTTTAAGCGAAGCGCGTGGGAGAGCATCCCCGGCGTGGTTCAGCGCATTG
AATATGATCCGAATCGCAGCGCGCTCATCGCGCTTGTGCGCCATCAGAAG
AAGTGCCCGGCAGTGAAGAAGAAACAAAGGCCGGATCATTTTGCCTACAT
CATCTGTCCGACGGGCTTGCAGATCGGACAGACTGTTGTGGCAAGTCGCC
AAACACCAGTTGACGTCAAGGTTGGAAACGCCATGACGCTGAAACACGTT
CCAGTAGGCACAGTCGTGCACAACATAGAGCTTCGACCGGGGCATGGGGC
GCAGATGTGTCGTTCCGCAGGAACCAGTGCGCGTGTCCTTGAGCGAGATG
AATCGAAGGGGTTGGCACTTCTCAGGCTTCAAAGCAAGGAGCAACGGCTG
GTCCGACTGTCGTGCATGGTGTCAGTAGGGCAAGTGAGCAACCCTGAACA
TAAGAATCAGAGCTTTGGAAAGGCGGGACGAATGAGGTGGAAAGGCATCC
GTCCTACAGTCCGCGGTGTTGCTATGAACCCAATTGATCACCCGCACGGT
GGAGGTGAAGGTAAGACTAGCGGTGGTCGCCCTTCGGTTTCAAAGTGGGG
CAAACCAACAAAAGGACATCGCACGAGGAACAAACGAAAACAAAGTGGCA
AGTACATCTTAAAACGCCGATTCGATAAGTAA
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