Gchil1933.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1933.t1
Unique NameGchil1933.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length244
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1228887..1229618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0266854
PFAMsMed6
Max annot lvl554915|Amoebozoa
KEGG koko:K15128
GOsGO:0000428,GO:0001128,GO:0003674,GO:0003712,GO:0003713,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0016043,GO:0016070,GO:0016591,GO:0016592,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070847,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990234,GO:2000112,GO:2001141
Evalue8.87e-35
EggNOG OGsCOG5097@1|root,KOG3169@2759|Eukaryota,3XAMG@554915|Amoebozoa
DescriptionMED6 mediator sub complex component
COG categoryK
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1933Gchil1933Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1228887..1229618 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1933.t1.stop1Gchil1933.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1228887..1228889 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1933.t1.CDS1Gchil1933.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1228887..1229618 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1933.t1.exon1Gchil1933.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1228887..1229618 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1933.t1.start1Gchil1933.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1229616..1229618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1933.t1Gchil1933.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1228887..1229618 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1933.t1 ID=Gchil1933.t1|Name=Gchil1933.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=244bp
MVASSSNMDVEETEDLTGVMWHDKNWLSFFPLTKEHVLEYFSLSQFYDER
CNNQQIKLQRLDPKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLE
PLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQNATAVSNQG
NYSWEPPPVSLSEREDTSIAQTGAEVLSSAEKSAIDSMLFDVLEKNRQIH
AAHAEKMSTQVEKREDEVVNAPTASASATATATGTSHNASTAS*
back to top

spliced messenger RNA

>Gchil1933.t1 ID=Gchil1933.t1|Name=Gchil1933.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=732bp|location=Sequence derived from alignment at tig00004439_pilon:1228887..1229618- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCATCTTCGTCCAACATGGACGTCGAAGAAACCGAGGACCTCAC
CGGTGTTATGTGGCACGACAAGAACTGGTTATCTTTCTTTCCTCTCACTA
AGGAACACGTTCTCGAGTATTTCTCTCTTTCGCAGTTCTACGACGAGCGA
TGCAACAATCAGCAAATCAAGCTGCAGCGTCTAGACCCCAAACTCTTGGA
AACCATGCCCGGAATAGAGTATCAAGTCACGGCTGATCCGGCACCTGGCC
TATTTATCATCACCAAGTTTCTTCGATCGATTCGACCGCCCAATCTGGAG
CCCTTGGCCATGTACTACGTGTTGGAAGGTGATGTGTACCAAGCGCCTTC
GATACACGCCATTCTTTCCTCAAGAATCCTACAATCACTGCATCATTTGC
GCAAAGCGTTTGAAACCATGCAGAATGCCACCGCCGTATCTAATCAAGGA
AATTACTCATGGGAGCCCCCACCAGTGTCTTTGAGCGAACGAGAGGACAC
CAGTATTGCCCAGACGGGCGCTGAAGTTCTTTCCAGCGCTGAAAAGAGTG
CCATTGATTCTATGCTGTTTGACGTGCTTGAAAAGAATCGTCAGATTCAT
GCTGCACATGCTGAAAAAATGTCTACTCAAGTAGAAAAACGCGAGGATGA
AGTCGTGAACGCGCCGACTGCGTCAGCATCCGCAACAGCAACGGCCACTG
GAACCTCGCACAACGCGAGCACTGCCTCGTGA
back to top

protein sequence of Gchil1933.t1

>Gchil1933.t1 ID=Gchil1933.t1|Name=Gchil1933.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=244bp
MVASSSNMDVEETEDLTGVMWHDKNWLSFFPLTKEHVLEYFSLSQFYDER
CNNQQIKLQRLDPKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLE
PLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQNATAVSNQG
NYSWEPPPVSLSEREDTSIAQTGAEVLSSAEKSAIDSMLFDVLEKNRQIH
AAHAEKMSTQVEKREDEVVNAPTASASATATATGTSHNASTAS*
back to top

mRNA from alignment at tig00004439_pilon:1228887..1229618-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1933.t1 ID=Gchil1933.t1|Name=Gchil1933.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=732bp|location=Sequence derived from alignment at tig00004439_pilon:1228887..1229618- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGCATCTTCGTCCAACATGGACGTCGAAGAAACCGAGGACCTCAC
CGGTGTTATGTGGCACGACAAGAACTGGTTATCTTTCTTTCCTCTCACTA
AGGAACACGTTCTCGAGTATTTCTCTCTTTCGCAGTTCTACGACGAGCGA
TGCAACAATCAGCAAATCAAGCTGCAGCGTCTAGACCCCAAACTCTTGGA
AACCATGCCCGGAATAGAGTATCAAGTCACGGCTGATCCGGCACCTGGCC
TATTTATCATCACCAAGTTTCTTCGATCGATTCGACCGCCCAATCTGGAG
CCCTTGGCCATGTACTACGTGTTGGAAGGTGATGTGTACCAAGCGCCTTC
GATACACGCCATTCTTTCCTCAAGAATCCTACAATCACTGCATCATTTGC
GCAAAGCGTTTGAAACCATGCAGAATGCCACCGCCGTATCTAATCAAGGA
AATTACTCATGGGAGCCCCCACCAGTGTCTTTGAGCGAACGAGAGGACAC
CAGTATTGCCCAGACGGGCGCTGAAGTTCTTTCCAGCGCTGAAAAGAGTG
CCATTGATTCTATGCTGTTTGACGTGCTTGAAAAGAATCGTCAGATTCAT
GCTGCACATGCTGAAAAAATGTCTACTCAAGTAGAAAAACGCGAGGATGA
AGTCGTGAACGCGCCGACTGCGTCAGCATCCGCAACAGCAACGGCCACTG
GAACCTCGCACAACGCGAGCACTGCCTCGTGA
back to top

Coding sequence (CDS) from alignment at tig00004439_pilon:1228887..1229618-

>Gchil1933.t1 ID=Gchil1933.t1|Name=Gchil1933.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=732bp|location=Sequence derived from alignment at tig00004439_pilon:1228887..1229618- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGCATCTTCGTCCAACATGGACGTCGAAGAAACCGAGGACCTCAC
CGGTGTTATGTGGCACGACAAGAACTGGTTATCTTTCTTTCCTCTCACTA
AGGAACACGTTCTCGAGTATTTCTCTCTTTCGCAGTTCTACGACGAGCGA
TGCAACAATCAGCAAATCAAGCTGCAGCGTCTAGACCCCAAACTCTTGGA
AACCATGCCCGGAATAGAGTATCAAGTCACGGCTGATCCGGCACCTGGCC
TATTTATCATCACCAAGTTTCTTCGATCGATTCGACCGCCCAATCTGGAG
CCCTTGGCCATGTACTACGTGTTGGAAGGTGATGTGTACCAAGCGCCTTC
GATACACGCCATTCTTTCCTCAAGAATCCTACAATCACTGCATCATTTGC
GCAAAGCGTTTGAAACCATGCAGAATGCCACCGCCGTATCTAATCAAGGA
AATTACTCATGGGAGCCCCCACCAGTGTCTTTGAGCGAACGAGAGGACAC
CAGTATTGCCCAGACGGGCGCTGAAGTTCTTTCCAGCGCTGAAAAGAGTG
CCATTGATTCTATGCTGTTTGACGTGCTTGAAAAGAATCGTCAGATTCAT
GCTGCACATGCTGAAAAAATGTCTACTCAAGTAGAAAAACGCGAGGATGA
AGTCGTGAACGCGCCGACTGCGTCAGCATCCGCAACAGCAACGGCCACTG
GAACCTCGCACAACGCGAGCACTGCCTCGTGA
back to top