Gchil1933.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male
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Overview
Homology
BLAST of Gchil1933.t1 vs. uniprot
Match: A0A2V3ILC2_9FLOR (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILC2_9FLOR) HSP 1 Score: 333 bits (854), Expect = 2.770e-113 Identity = 163/207 (78.74%), Postives = 181/207 (87.44%), Query Frame = 0
Query: 1 MVASSSNMDVEETEDLTGVMWHDKNWLSFFPLTKEHVLEYFSLSQFYDERCNNQQIKLQRLDPKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQNATAVSNQGNYSWEPPPVSLSEREDTSIAQTGAEVLSSAEKSAIDSMLFDVLEKNRQIHAAHAEKM 207
MVASSSNM VEETEDLTGVMWHDKNWLSFFPL+K++VLEYFS SQFYDERCNNQQIKLQ LD KLLE+M GIEYQVTAD APGLF+ITKFLRS+ P +LEPLAMYYVL+GDVYQAPS+HAILSSRILQ LHHLRKAFETMQNA+ VS QG Y WEP PV ++ERED + G E+LS AE+S +D MLF+VLE+NRQIH AH EKM
Sbjct: 1 MVASSSNMAVEETEDLTGVMWHDKNWLSFFPLSKDNVLEYFSHSQFYDERCNNQQIKLQMLDNKLLESMAGIEYQVTADVAPGLFVITKFLRSLSPASLEPLAMYYVLDGDVYQAPSVHAILSSRILQCLHHLRKAFETMQNASTVSVQGQYWWEPSPVGVNEREDVGEGEGGTELLSGAERSGVDGMLFEVLERNRQIHGAHVEKM 207
BLAST of Gchil1933.t1 vs. uniprot
Match: F4Q2D8_CAVFA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q2D8_CAVFA) HSP 1 Score: 144 bits (362), Expect = 1.180e-38 Identity = 66/127 (51.97%), Postives = 91/127 (71.65%), Query Frame = 0
Query: 12 ETEDLTGVMWHDKNWLSFFPLTKEHVLEYFSLSQFYDERCNNQQIKLQRLDPKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFE 138
E EDLT +MW D WL FPL + VL YFS+SQFYD++CNN+ +K+QRLDP L+TM GIEYQV P LF+I + R P +++ +YY++ G +YQAP + A+L+SR+ QSL+HLR+AF+
Sbjct: 19 EVEDLTQIMWRDPLWLQMFPLNQMTVLTYFSMSQFYDKQCNNEILKMQRLDPSALKTMVGIEYQVINYQEPSLFLIARQYRE-SPGDVKVQTLYYIINGSIYQAPDLKAVLTSRLTQSLYHLRQAFD 144
BLAST of Gchil1933.t1 vs. uniprot
Match: D3AXU0_POLPP (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3AXU0_POLPP) HSP 1 Score: 140 bits (352), Expect = 2.200e-37 Identity = 67/129 (51.94%), Postives = 89/129 (68.99%), Query Frame = 0
Query: 10 VEETEDLTGVMWHDKNWLSFFPLTKEHVLEYFSLSQFYDERCNNQQIKLQRLDPKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFE 138
++E +DLT +MW D+ WLS FPL K +L YFSLSQFYD++CNN+ +K+QRLDP L+TM G+EY+V D P LFII K R + +YYV+ G +YQ+P I +L SR++QSL HL AFE
Sbjct: 16 IDEEQDLTQIMWRDQVWLSQFPLNKMTILNYFSLSQFYDKQCNNEILKMQRLDPSALKTMVGLEYEVVVDKEPLLFIIAKQNRLTANDAITQ-TLYYVINGSIYQSPDIKNVLESRMIQSLFHLINAFE 143
BLAST of Gchil1933.t1 vs. uniprot
Match: A0A7S3EG92_9RHOD (Mediator of RNA polymerase II transcription subunit 6 n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EG92_9RHOD) HSP 1 Score: 136 bits (342), Expect = 1.340e-35 Identity = 79/214 (36.92%), Postives = 117/214 (54.67%), Query Frame = 0
Query: 14 EDLTGVMWHDKNWLSFFPLTKEHVLEYFSLSQFYDERCNNQQIKLQRLDPKLLETMPGIEYQVTADPA--PGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQNATAV-------------------------SNQGN-YSWEPPPVSLSEREDTSIAQTGAEVLSSAEKSAIDSMLFDVLEKNRQI 199
E LT + W+DK WLS+FPL K+ VLEYF+ S FY+ C N+Q K+QRL+ E +PGI Y+V D P LF+I K R+ + LA YY++ G Y++P H++L++RI+QS++HLR AF+ +Q S QG+ YSW+P S S+ D A V E+ +D +L+ +LE+NR++
Sbjct: 4 ESLTSLSWNDKVWLSYFPLDKDTVLEYFARSPFYNRSCLNEQYKMQRLEISAFENVPGILYEVVHDLTNEPLLFVIAKLERAENL-TVRTLAYYYIMNGVAYESPKAHSVLTTRIVQSMYHLRNAFDALQEKVGSHTCLLLRIVIPRRKPPDIQCSVQIPSEQGDWYSWKPSYGSSSDAGDDKDESEAAIV----ERQTVDRLLYGILERNRRV 212
BLAST of Gchil1933.t1 vs. uniprot
Match: MED6_DICDI (Putative mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=MED6_DICDI) HSP 1 Score: 134 bits (338), Expect = 6.610e-35 Identity = 66/165 (40.00%), Postives = 99/165 (60.00%), Query Frame = 0
Query: 1 MVASSSNMDV-EETEDLTGVMWHDKNWLSFFPLTKEHVLEYFSLSQFYDERCNNQQIKLQRLDPKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQNATAVSNQGNYSWEPPPVSLSER 164
M++ +S + EE DLT VMW D WL +PL + +L+YFS SQFYD+ CNN+Q+K+QRLD L+ M G+EY++ P F+I K R I P ++ +YYV+ G++YQAP +H + SR+ QS+ HL +AF ++ + YS P + E+
Sbjct: 50 MISDTSTPRILEEEPDLTQVMWRDPLWLQMYPLNPQTILQYFSYSQFYDKNCNNEQLKMQRLDLSALKNMDGLEYELIKFVEPSFFLIAKQTR-ISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSISHLSEAFNSISSIVNWDIVNGYSLNLDPSNQQEK 213
BLAST of Gchil1933.t1 vs. uniprot
Match: F0ZNV8_DICPU (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZNV8_DICPU) HSP 1 Score: 134 bits (338), Expect = 7.660e-35 Identity = 68/159 (42.77%), Postives = 95/159 (59.75%), Query Frame = 0
Query: 10 VEETEDLTGVMWHDKNWLSFFPLTKEHVLEYFSLSQFYDERCNNQQIKLQRLDPKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQNATAVSNQGNYSWEPPPVSLSEREDTS 168
+EE D T VMW D WL FPL + VL YFS SQFYD+ CNN+ +K+QRLDP L+TM G+EY+V P ++I K R I P ++ +YYV+ G++YQAP + + +SRI QSL HL +AF + + YS+ P + E++ S
Sbjct: 67 LEEEPDFTQVMWRDPVWLQMFPLNQHTVLTYFSYSQFYDKNCNNETLKMQRLDPAALKTMEGLEYEVAKFVEPSFYLIAKQNR-ISPSDVIIQQLYYVINGNIYQAPDLRQVFTSRISQSLFHLSEAFNKISSIINWDIINGYSFNFDPSNQQEKQKLS 224
BLAST of Gchil1933.t1 vs. uniprot
Match: UPI000644C0CC (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644C0CC) HSP 1 Score: 133 bits (334), Expect = 8.840e-35 Identity = 62/127 (48.82%), Postives = 86/127 (67.72%), Query Frame = 0
Query: 14 EDLTGVMWHDKNWLSFFPLTKEHVLEYFSLSQFYDERCNNQQIKLQRLDPKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETM 140
EDLT +MW D WL PL K+ VL YFS+SQFYD++CNN+ +K+QRLDP L+TM GIEY+V P LF++ K R + P + +YY++ G +YQ+P I ++ SR++QSL HL AFE +
Sbjct: 26 EDLTQIMWRDPVWLQQIPLNKQTVLLYFSMSQFYDKQCNNEILKMQRLDPSALKTMIGIEYEVVMAQEPMLFLVAKQSR-VSPTDASVQTLYYIINGTIYQSPDIRSVFESRMVQSLFHLIHAFEKL 151
BLAST of Gchil1933.t1 vs. uniprot
Match: M2XHR9_GALSU (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XHR9_GALSU) HSP 1 Score: 125 bits (313), Expect = 4.630e-32 Identity = 59/134 (44.03%), Postives = 90/134 (67.16%), Query Frame = 0
Query: 14 EDLTGVMWHDKNWLSFFPLTKEHVLEYFSLSQFYDERCNNQQIKLQRLDPKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQNATAVS 147
EDL + W D +L+ FPLT+E VL+YFS S FYD CNN+QI++Q+LDP++L + G EY VT P F++ K R R + L ++Y+++G VYQAPS+ ++L SR+ +S H+ ++FE++Q A+ S
Sbjct: 10 EDLAHLSWRDNWFLANFPLTQETVLDYFSGSPFYDPSCNNEQIRMQKLDPEVLYNLVGTEYMVTNQQEPVFFVVEKVYRYNRE-ETKTLQVFYIIQGTVYQAPSLRSLLLSRLSESFFHISESFESLQQASLFS 142
BLAST of Gchil1933.t1 vs. uniprot
Match: A0A8J4Q4B9_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q4B9_9MYCE) HSP 1 Score: 125 bits (315), Expect = 1.230e-31 Identity = 63/154 (40.91%), Postives = 91/154 (59.09%), Query Frame = 0
Query: 11 EETEDLTGVMWHDKNWLSFFPLTKEHVLEYFSLSQFYDERCNNQQIKLQRLDPKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQNATAVSNQGNYSWEPPPVSLSER 164
+E DLT VMW D WL FPL + VL YF SQFYD+ CNN+ +K+QRL+ L+TM GIEY++ PG ++I K R + P + +YYV+ G++YQ+P + ++ +SRI QSL+HL +AF + + YS P E+
Sbjct: 26 KEEPDLTQVMWRDPLWLQMFPLNAQTVLSYFYYSQFYDKSCNNEILKMQRLELSSLKTMIGIEYELAHFVEPGFYVIAKQNR-VSPTDAVIQTLYYVINGNIYQSPYLRSVFTSRISQSLYHLSEAFSNISSTINWDITSGYSMNLDPNKQQEK 178
BLAST of Gchil1933.t1 vs. uniprot
Match: A0A1Y1HUV0_KLENI (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HUV0_KLENI) HSP 1 Score: 122 bits (307), Expect = 7.280e-31 Identity = 75/186 (40.32%), Postives = 106/186 (56.99%), Query Frame = 0
Query: 15 DLTGVMWHDKNWLSFFPLTKEHVLEYFSLSQFYDERCNNQQIKLQRLDPKLLETMP-GIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQNATAVSNQGNYSWEPPPVSLSEREDTSIAQTGA----EVLSSAEKSAIDSMLFDVLEK 195
DLTGV++ D WL FPL + VL+YF+LS FYD CNN+++K Q D LL TMP G EY V + P L++I K LR + P + PLA YYVL+G +YQAP + A+L SR +SL++++ F A + E E DT+++Q A E + AE +D ++ VL+K
Sbjct: 7 DLTGVLFSDPLWLQSFPLNRATVLDYFALSPFYDASCNNEKLKAQGKDLSLLSTMPYGPEYVVISAQEPNLYVIRKQLR-VSPDKMVPLAAYYVLDGSIYQAPHLQAVLGSRAERSLYYVQSGF-----GKAAMKLKEHLREDE-----ETRDTAVSQARAVPEIEPVDRAEAFYMDQIITSVLKK 181 The following BLAST results are available for this feature:
BLAST of Gchil1933.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Gchil1933.t1 ID=Gchil1933.t1|Name=Gchil1933.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=244bpback to top |