Gchil1923.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1923.t1
Unique NameGchil1923.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length205
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1199206..1199884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1923Gchil1923Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1199206..1199884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1923.t1Gchil1923.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1199206..1199884 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1923.t1.start1Gchil1923.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1199206..1199208 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1923.t1.CDS1Gchil1923.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1199206..1199486 +
Gchil1923.t1.CDS2Gchil1923.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1199551..1199884 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1923.t1.exon1Gchil1923.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1199206..1199486 +
Gchil1923.t1.exon2Gchil1923.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1199551..1199884 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1923.t1.intron1Gchil1923.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1199487..1199550 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1923.t1.stop1Gchil1923.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1199882..1199884 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1923.t1 ID=Gchil1923.t1|Name=Gchil1923.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=205bp
MGDARLRIEFLLNKEQDTVSDGAVVSSCSSSSSCSSGYGVKPIVSSKRPF
PCETCGFSFSQRSDRAKHVRTVHLRQRPFVCSYCGQSFGEKGNLNKHIRA
LHEKARPFKCDECESAFSFHDGLQRHVAMVHRDRRPFMCSEPGCGKAFKQ
KAHVHKHISSVHRNEKPCVCFCGARFREKYNMRQHQKAVHTMHSLHTMHS
AHTK*
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spliced messenger RNA

>Gchil1923.t1 ID=Gchil1923.t1|Name=Gchil1923.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00004439_pilon:1199206..1199884+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGACGCCAGACTGCGCATCGAGTTTCTGTTGAATAAGGAGCAGGA
CACGGTGAGTGACGGCGCGGTTGTGTCCTCTTGTTCGTCGTCTTCTAGCT
GCTCGTCGGGTTATGGTGTCAAGCCGATTGTGTCGTCAAAACGACCGTTT
CCGTGTGAGACGTGTGGCTTTTCATTCTCACAACGCTCCGACCGCGCAAA
GCATGTGCGCACGGTGCACCTGCGCCAGCGCCCGTTCGTGTGCAGCTACT
GCGGCCAATCGTTTGGCGAGAAGGGCAATTTAAACAAACACATCCGCGCG
CTACACGAGAAGGCGCGACCTTTCAAATGCGACGAATGCGAGTCGGCGTT
TTCGTTCCACGACGGGCTGCAGCGGCACGTGGCGATGGTGCATCGCGACC
GACGCCCGTTCATGTGCAGCGAGCCGGGCTGCGGCAAGGCGTTCAAGCAA
AAGGCACACGTGCACAAGCACATCAGCAGCGTGCACCGCAACGAGAAACC
GTGCGTGTGCTTCTGCGGCGCGCGCTTTCGCGAAAAGTACAATATGCGAC
AGCACCAAAAGGCCGTTCACACCATGCACAGCCTTCACACCATGCACAGC
GCTCACACCAAGTAA
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protein sequence of Gchil1923.t1

>Gchil1923.t1 ID=Gchil1923.t1|Name=Gchil1923.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=205bp
MGDARLRIEFLLNKEQDTVSDGAVVSSCSSSSSCSSGYGVKPIVSSKRPF
PCETCGFSFSQRSDRAKHVRTVHLRQRPFVCSYCGQSFGEKGNLNKHIRA
LHEKARPFKCDECESAFSFHDGLQRHVAMVHRDRRPFMCSEPGCGKAFKQ
KAHVHKHISSVHRNEKPCVCFCGARFREKYNMRQHQKAVHTMHSLHTMHS
AHTK*
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mRNA from alignment at tig00004439_pilon:1199206..1199884+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1923.t1 ID=Gchil1923.t1|Name=Gchil1923.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=679bp|location=Sequence derived from alignment at tig00004439_pilon:1199206..1199884+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGACGCCAGACTGCGCATCGAGTTTCTGTTGAATAAGGAGCAGGA
CACGGTGAGTGACGGCGCGGTTGTGTCCTCTTGTTCGTCGTCTTCTAGCT
GCTCGTCGGGTTATGGTGTCAAGCCGATTGTGTCGTCAAAACGACCGTTT
CCGTGTGAGACGTGTGGCTTTTCATTCTCACAACGCTCCGACCGCGCAAA
GCATGTGCGCACGGTGCACCTGCGCCAGCGCCCGTTCGTGTGCAGCTACT
GCGGCCAATCGTTTGGCGAGAAGGGCAATTTGTAAGTTGcaacaaacaag
cgcacacaacacaacacaacacaacCGTTCTGACGTATTCGACAGAAACA
AACACATCCGCGCGCTACACGAGAAGGCGCGACCTTTCAAATGCGACGAA
TGCGAGTCGGCGTTTTCGTTCCACGACGGGCTGCAGCGGCACGTGGCGAT
GGTGCATCGCGACCGACGCCCGTTCATGTGCAGCGAGCCGGGCTGCGGCA
AGGCGTTCAAGCAAAAGGCACACGTGCACAAGCACATCAGCAGCGTGCAC
CGCAACGAGAAACCGTGCGTGTGCTTCTGCGGCGCGCGCTTTCGCGAAAA
GTACAATATGCGACAGCACCAAAAGGCCGTTCACACCATGCACAGCCTTC
ACACCATGCACAGCGCTCACACCAAGTAA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1199206..1199884+

>Gchil1923.t1 ID=Gchil1923.t1|Name=Gchil1923.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=615bp|location=Sequence derived from alignment at tig00004439_pilon:1199206..1199884+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGACGCCAGACTGCGCATCGAGTTTCTGTTGAATAAGGAGCAGGA
CACGGTGAGTGACGGCGCGGTTGTGTCCTCTTGTTCGTCGTCTTCTAGCT
GCTCGTCGGGTTATGGTGTCAAGCCGATTGTGTCGTCAAAACGACCGTTT
CCGTGTGAGACGTGTGGCTTTTCATTCTCACAACGCTCCGACCGCGCAAA
GCATGTGCGCACGGTGCACCTGCGCCAGCGCCCGTTCGTGTGCAGCTACT
GCGGCCAATCGTTTGGCGAGAAGGGCAATTTAAACAAACACATCCGCGCG
CTACACGAGAAGGCGCGACCTTTCAAATGCGACGAATGCGAGTCGGCGTT
TTCGTTCCACGACGGGCTGCAGCGGCACGTGGCGATGGTGCATCGCGACC
GACGCCCGTTCATGTGCAGCGAGCCGGGCTGCGGCAAGGCGTTCAAGCAA
AAGGCACACGTGCACAAGCACATCAGCAGCGTGCACCGCAACGAGAAACC
GTGCGTGTGCTTCTGCGGCGCGCGCTTTCGCGAAAAGTACAATATGCGAC
AGCACCAAAAGGCCGTTCACACCATGCACAGCCTTCACACCATGCACAGC
GCTCACACCAAGTAA
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