Gchil1923.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil1923.t1
Unique NameGchil1923.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length205
Homology
[Close]
BLAST of Gchil1923.t1 vs. uniprot
Match: A0A2V3ILD7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILD7_9FLOR)

HSP 1 Score: 102 bits (254), Expect = 1.520e-23
Identity = 129/197 (65.48%), Postives = 145/197 (73.60%), Query Frame = 0 
Query:    4 ARLRIEFLLNKEQDTVSDGAVVSSCSSSSSCSSGYGVKPI--------VSSKRPFPCETCGFSFSQRSDRAKHVRTVHLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEPGCGKAFKQKAHVHXXXXXXXXXXXXCVCFCGARFREKYNMRQHQKAVHTM 192
            ++LRI+FLLN  +        V  C+++ + SS                 +KRPF C+TCGF+F+QRSDRAKH+RTVHLR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EPGC K FKQKAH              C CFCGARFRE+YNM+QHQKAVH +
Sbjct:   19 SKLRIDFLLNGGK-----AGDVEHCAATHASSSXXXXXXXXXXXXXXXAPTKRPFACDTCGFAFTQRSDRAKHIRTVHLRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPGCDKTFKQKAHADKHVTSVHRKEKPCECFCGARFRERYNMKQHQKAVHNL 210
The following BLAST results are available for this feature:
BLAST of Gchil1923.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3ILD7_9FLOR1.520e-2365.48Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 50..73
e-value: 0.0047
score: 26.2
coord: 79..102
e-value: 3.9E-4
score: 29.7
coord: 108..131
e-value: 0.096
score: 21.8
coord: 137..162
e-value: 0.006
score: 25.8
coord: 168..190
e-value: 59.0
score: 6.5
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 137..162
e-value: 0.0011
score: 19.3
coord: 50..73
e-value: 1.3E-4
score: 22.3
coord: 79..102
e-value: 1.4E-5
score: 25.2
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 139..162
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 81..102
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 110..131
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 168..190
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 52..73
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 108..136
score: 12.507586
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 79..107
score: 14.024752
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 166..195
score: 9.514818
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 50..78
score: 13.27656
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 137..167
score: 14.024752
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 77..102
e-value: 3.4E-9
score: 38.2
coord: 48..74
e-value: 3.9E-8
score: 34.8
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 103..138
e-value: 6.9E-8
score: 34.4
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 139..190
e-value: 4.7E-10
score: 41.7
NoneNo IPR availablePANTHERPTHR24381:SF308CHROMATIN-LINKED ADAPTOR FOR MSL PROTEINS, ISOFORM B-RELATEDcoord: 72..196
NoneNo IPR availablePANTHERPTHR24381:SF308CHROMATIN-LINKED ADAPTOR FOR MSL PROTEINS, ISOFORM B-RELATEDcoord: 46..132
NoneNo IPR availablePANTHERPTHR24381ZINC FINGER PROTEINcoord: 72..196
NoneNo IPR availablePANTHERPTHR24381ZINC FINGER PROTEINcoord: 46..132
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..34
score: 6.0
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 48..99
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 135..187
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 88..143

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1199206..1199884 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1923.t1Gchil1923.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004439_pilon 1199206..1199884 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil1923.t1 ID=Gchil1923.t1|Name=Gchil1923.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=205bp
MGDARLRIEFLLNKEQDTVSDGAVVSSCSSSSSCSSGYGVKPIVSSKRPF
PCETCGFSFSQRSDRAKHVRTVHLRQRPFVCSYCGQSFGEKGNLNKHIRA
LHEKARPFKCDECESAFSFHDGLQRHVAMVHRDRRPFMCSEPGCGKAFKQ
KAHVHKHISSVHRNEKPCVCFCGARFREKYNMRQHQKAVHTMHSLHTMHS
AHTK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf