Gchil1921.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1921.t1
Unique NameGchil1921.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length430
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1190356..1191645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog91464.S7335_1977
PFAMsDNA_alkylation
Max annot lvl1117|Cyanobacteria
Evalue8.06e-08
EggNOG OGsCOG4912@1|root,COG4912@2|Bacteria,1G8NP@1117|Cyanobacteria
DescriptionDNA alkylation repair enzyme
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1921Gchil1921Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1190356..1191645 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1921.t1.stop1Gchil1921.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1190356..1190358 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1921.t1.CDS1Gchil1921.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1190356..1191645 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1921.t1.exon1Gchil1921.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1190356..1191645 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1921.t1.start1Gchil1921.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1191643..1191645 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1921.t1Gchil1921.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1190356..1191645 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1921.t1 ID=Gchil1921.t1|Name=Gchil1921.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=430bp
MQTFTSNPAQIVFQLQRLLDQRATTDTQQWSSERMHPVTMSRGVRMIGVR
FCVHTWNEQWTQQTPNVTPDLQVSVAMQLFRSEFLEDKFSAIIFLSELLI
PANIIYPAHMRQFADLIDTSCISGYEVCDKFSTLVLKQMLIDHRHQMMPL
IAGWMRSECSWRARSAIWALIPLARDAIYENLILEGCSIVLEKTDDCCKL
AVASALRALARTSPGPVYDFLNEDHNLCRMSASGLSRACGDQHEWKTYFR
QRRKDLQRSRRTTQGRSPRLDLSQAGASTAILPVVGALAPVQSSTALPIT
GALTAVVTVPAVAASSTSTASVAFGAHQVAVSLPSAIERAQSAMVSDIGT
PLMVTSHVTLPTATNRRALPSFSELIRGSRSHPSAISEARDEFDSRQYDE
DVNGARRSDSGEAEEGSGGGMENRTRWRQ*
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spliced messenger RNA

>Gchil1921.t1 ID=Gchil1921.t1|Name=Gchil1921.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00004439_pilon:1190356..1191645- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGACATTTACTTCCAATCCGGCGCAAATCGTGTTTCAACTGCAGCG
CCTTTTGGATCAAAGGGCCACCACCGATACCCAGCAATGGAGTTCCGAGC
GCATGCACCCCGTCACCATGTCCCGTGGCGTTAGAATGATCGGCGTTCGT
TTCTGCGTTCACACTTGGAACGAACAATGGACACAGCAAACACCCAACGT
CACACCCGACCTGCAAGTCTCCGTCGCCATGCAGCTCTTCCGTTCCGAGT
TCCTCGAGGACAAGTTTTCCGCTATCATCTTTCTCAGTGAGCTCCTCATC
CCCGCAAACATCATTTACCCTGCCCACATGCGCCAGTTTGCCGACCTAAT
CGACACATCGTGCATATCCGGCTACGAAGTATGTGACAAGTTTAGCACTT
TGGTTCTTAAACAGATGTTGATAGATCATCGCCATCAGATGATGCCTCTC
ATCGCCGGCTGGATGCGCTCCGAATGCAGCTGGAGAGCTCGAAGTGCTAT
ATGGGCTCTCATTCCGCTGGCGCGCGATGCAATCTACGAAAACTTGATTC
TGGAAGGATGCTCAATCGTGCTTGAAAAAACAGACGATTGCTGCAAGCTG
GCTGTTGCGAGCGCTCTCAGGGCTCTCGCTCGCACCTCTCCTGGCCCCGT
CTATGACTTCCTCAACGAGGATCACAACCTGTGTAGGATGTCTGCCAGCG
GACTTTCCCGCGCGTGCGGCGACCAACATGAGTGGAAGACTTATTTTCGA
CAAAGGCGTAAGGATCTGCAACGAAGCCGACGAACTACTCAAGGACGCTC
TCCGCGATTGGATCTATCTCAAGCTGGCGCGTCCACGGCGATTTTGCCCG
TGGTTGGGGCACTAGCGCCGGTGCAGTCTAGCACTGCTTTGCCTATCACA
GGGGCATTGACAGCTGTGGTAACCGTACCTGCAGTAGCTGCGTCCAGCAC
ATCGACAGCATCTGTGGCGTTTGGCGCTCACCAAGTGGCTGTTTCTCTGC
CGTCGGCAATAGAGAGAGCTCAGAGTGCGATGGTGAGCGATATTGGAACT
CCTTTGATGGTGACGTCACACGTGACGTTGCCAACTGCAACCAATCGACG
CGCTTTACCTTCATTCTCCGAGCTGATACGCGGAAGCCGTTCACATCCGA
GCGCCATTTCCGAGGCGCGAGATGAGTTCGATTCAAGGCAGTACGATGAA
GACGTGAATGGGGCACGGCGCTCTGACAGTGGCGAGGCTGAAGAAGGATC
GGGCGGTGGAATGGAAAACCGGACGAGATGGAGGCAATGA
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protein sequence of Gchil1921.t1

>Gchil1921.t1 ID=Gchil1921.t1|Name=Gchil1921.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=430bp
MQTFTSNPAQIVFQLQRLLDQRATTDTQQWSSERMHPVTMSRGVRMIGVR
FCVHTWNEQWTQQTPNVTPDLQVSVAMQLFRSEFLEDKFSAIIFLSELLI
PANIIYPAHMRQFADLIDTSCISGYEVCDKFSTLVLKQMLIDHRHQMMPL
IAGWMRSECSWRARSAIWALIPLARDAIYENLILEGCSIVLEKTDDCCKL
AVASALRALARTSPGPVYDFLNEDHNLCRMSASGLSRACGDQHEWKTYFR
QRRKDLQRSRRTTQGRSPRLDLSQAGASTAILPVVGALAPVQSSTALPIT
GALTAVVTVPAVAASSTSTASVAFGAHQVAVSLPSAIERAQSAMVSDIGT
PLMVTSHVTLPTATNRRALPSFSELIRGSRSHPSAISEARDEFDSRQYDE
DVNGARRSDSGEAEEGSGGGMENRTRWRQ*
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mRNA from alignment at tig00004439_pilon:1190356..1191645-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1921.t1 ID=Gchil1921.t1|Name=Gchil1921.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00004439_pilon:1190356..1191645- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGACATTTACTTCCAATCCGGCGCAAATCGTGTTTCAACTGCAGCG
CCTTTTGGATCAAAGGGCCACCACCGATACCCAGCAATGGAGTTCCGAGC
GCATGCACCCCGTCACCATGTCCCGTGGCGTTAGAATGATCGGCGTTCGT
TTCTGCGTTCACACTTGGAACGAACAATGGACACAGCAAACACCCAACGT
CACACCCGACCTGCAAGTCTCCGTCGCCATGCAGCTCTTCCGTTCCGAGT
TCCTCGAGGACAAGTTTTCCGCTATCATCTTTCTCAGTGAGCTCCTCATC
CCCGCAAACATCATTTACCCTGCCCACATGCGCCAGTTTGCCGACCTAAT
CGACACATCGTGCATATCCGGCTACGAAGTATGTGACAAGTTTAGCACTT
TGGTTCTTAAACAGATGTTGATAGATCATCGCCATCAGATGATGCCTCTC
ATCGCCGGCTGGATGCGCTCCGAATGCAGCTGGAGAGCTCGAAGTGCTAT
ATGGGCTCTCATTCCGCTGGCGCGCGATGCAATCTACGAAAACTTGATTC
TGGAAGGATGCTCAATCGTGCTTGAAAAAACAGACGATTGCTGCAAGCTG
GCTGTTGCGAGCGCTCTCAGGGCTCTCGCTCGCACCTCTCCTGGCCCCGT
CTATGACTTCCTCAACGAGGATCACAACCTGTGTAGGATGTCTGCCAGCG
GACTTTCCCGCGCGTGCGGCGACCAACATGAGTGGAAGACTTATTTTCGA
CAAAGGCGTAAGGATCTGCAACGAAGCCGACGAACTACTCAAGGACGCTC
TCCGCGATTGGATCTATCTCAAGCTGGCGCGTCCACGGCGATTTTGCCCG
TGGTTGGGGCACTAGCGCCGGTGCAGTCTAGCACTGCTTTGCCTATCACA
GGGGCATTGACAGCTGTGGTAACCGTACCTGCAGTAGCTGCGTCCAGCAC
ATCGACAGCATCTGTGGCGTTTGGCGCTCACCAAGTGGCTGTTTCTCTGC
CGTCGGCAATAGAGAGAGCTCAGAGTGCGATGGTGAGCGATATTGGAACT
CCTTTGATGGTGACGTCACACGTGACGTTGCCAACTGCAACCAATCGACG
CGCTTTACCTTCATTCTCCGAGCTGATACGCGGAAGCCGTTCACATCCGA
GCGCCATTTCCGAGGCGCGAGATGAGTTCGATTCAAGGCAGTACGATGAA
GACGTGAATGGGGCACGGCGCTCTGACAGTGGCGAGGCTGAAGAAGGATC
GGGCGGTGGAATGGAAAACCGGACGAGATGGAGGCAATGA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1190356..1191645-

>Gchil1921.t1 ID=Gchil1921.t1|Name=Gchil1921.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1290bp|location=Sequence derived from alignment at tig00004439_pilon:1190356..1191645- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGACATTTACTTCCAATCCGGCGCAAATCGTGTTTCAACTGCAGCG
CCTTTTGGATCAAAGGGCCACCACCGATACCCAGCAATGGAGTTCCGAGC
GCATGCACCCCGTCACCATGTCCCGTGGCGTTAGAATGATCGGCGTTCGT
TTCTGCGTTCACACTTGGAACGAACAATGGACACAGCAAACACCCAACGT
CACACCCGACCTGCAAGTCTCCGTCGCCATGCAGCTCTTCCGTTCCGAGT
TCCTCGAGGACAAGTTTTCCGCTATCATCTTTCTCAGTGAGCTCCTCATC
CCCGCAAACATCATTTACCCTGCCCACATGCGCCAGTTTGCCGACCTAAT
CGACACATCGTGCATATCCGGCTACGAAGTATGTGACAAGTTTAGCACTT
TGGTTCTTAAACAGATGTTGATAGATCATCGCCATCAGATGATGCCTCTC
ATCGCCGGCTGGATGCGCTCCGAATGCAGCTGGAGAGCTCGAAGTGCTAT
ATGGGCTCTCATTCCGCTGGCGCGCGATGCAATCTACGAAAACTTGATTC
TGGAAGGATGCTCAATCGTGCTTGAAAAAACAGACGATTGCTGCAAGCTG
GCTGTTGCGAGCGCTCTCAGGGCTCTCGCTCGCACCTCTCCTGGCCCCGT
CTATGACTTCCTCAACGAGGATCACAACCTGTGTAGGATGTCTGCCAGCG
GACTTTCCCGCGCGTGCGGCGACCAACATGAGTGGAAGACTTATTTTCGA
CAAAGGCGTAAGGATCTGCAACGAAGCCGACGAACTACTCAAGGACGCTC
TCCGCGATTGGATCTATCTCAAGCTGGCGCGTCCACGGCGATTTTGCCCG
TGGTTGGGGCACTAGCGCCGGTGCAGTCTAGCACTGCTTTGCCTATCACA
GGGGCATTGACAGCTGTGGTAACCGTACCTGCAGTAGCTGCGTCCAGCAC
ATCGACAGCATCTGTGGCGTTTGGCGCTCACCAAGTGGCTGTTTCTCTGC
CGTCGGCAATAGAGAGAGCTCAGAGTGCGATGGTGAGCGATATTGGAACT
CCTTTGATGGTGACGTCACACGTGACGTTGCCAACTGCAACCAATCGACG
CGCTTTACCTTCATTCTCCGAGCTGATACGCGGAAGCCGTTCACATCCGA
GCGCCATTTCCGAGGCGCGAGATGAGTTCGATTCAAGGCAGTACGATGAA
GACGTGAATGGGGCACGGCGCTCTGACAGTGGCGAGGCTGAAGAAGGATC
GGGCGGTGGAATGGAAAACCGGACGAGATGGAGGCAATGA
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