Gchil1921.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil1921.t1
Unique NameGchil1921.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length430
Homology
[Close]
BLAST of Gchil1921.t1 vs. uniprot
Match: UPI001AE79C9E (DNA alkylation repair protein n=1 Tax=Methanohalophilus levihalophilus TaxID=1431282 RepID=UPI001AE79C9E)

HSP 1 Score: 79.0 bits (193), Expect = 5.050e-13
Identity = 56/215 (26.05%), Postives = 104/215 (48.37%), Query Frame = 0 
Query:   10 QIVFQLQRLLDQRATTDTQQWSSERMHPVTMSRGVRMIGVRFCVHTWNEQWTQQTPNVTPDLQVSVAMQLFRSEFLEDKFSAIIFLSELLIPANIIYPAHMRQFADLIDTSCISGYEVCDKFSTLVLKQMLIDHRHQMMPLIAGWMRSECSWRARSAIWALIPLARDAIYENLILEGCSIVLEKTDDCCKLAVASALRALARTSPGPVYDFLNED 224
            ++V  LQ  L+  A   T+ W  + +      RGV +  +R  +  W  +  Q   N++ D Q+ +A+  F  E+ EDK + ++FL +L +     +     +F  L + + I  + V D F   VL  ++  +  +    I+GW  S   W+AR ++ A   L  +  +  ++LE CSI++++ +   K AV   +R LA++    V  F+ E+
Sbjct:    6 ELVTILQSRLESVAKIKTKDWWEKYLKYTIEFRGVNLAVIRDELKVWYTE--QGIDNLSLDDQLDLALSFFEEEYAEDKLAGVLFL-QLYLYDRFEWKLLFPRFEGLFENNYIFDWNVNDWFCVRVLGPIIEKNGMECAKAISGWHSSGNVWQARCSLVAFANLTGNEEFRTMLLESCSILIQREERFAKKAVGWIMRELAKSDEKVVVGFIQEN 217
The following BLAST results are available for this feature:
BLAST of Gchil1921.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001AE79C9E5.050e-1326.05DNA alkylation repair protein n=1 Tax=Methanohalop... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.25.10.90coord: 7..244
e-value: 4.7E-23
score: 84.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 384..429
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 383..429
NoneNo IPR availablePANTHERPTHR34070ARMADILLO-TYPE FOLDcoord: 3..239
IPR014825DNA alkylation repair enzymePFAMPF08713DNA_alkylationcoord: 35..232
e-value: 2.0E-15
score: 57.1
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 56..238

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1190356..1191645 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1921.t1Gchil1921.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004439_pilon 1190356..1191645 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil1921.t1 ID=Gchil1921.t1|Name=Gchil1921.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=430bp
MQTFTSNPAQIVFQLQRLLDQRATTDTQQWSSERMHPVTMSRGVRMIGVR
FCVHTWNEQWTQQTPNVTPDLQVSVAMQLFRSEFLEDKFSAIIFLSELLI
PANIIYPAHMRQFADLIDTSCISGYEVCDKFSTLVLKQMLIDHRHQMMPL
IAGWMRSECSWRARSAIWALIPLARDAIYENLILEGCSIVLEKTDDCCKL
AVASALRALARTSPGPVYDFLNEDHNLCRMSASGLSRACGDQHEWKTYFR
QRRKDLQRSRRTTQGRSPRLDLSQAGASTAILPVVGALAPVQSSTALPIT
GALTAVVTVPAVAASSTSTASVAFGAHQVAVSLPSAIERAQSAMVSDIGT
PLMVTSHVTLPTATNRRALPSFSELIRGSRSHPSAISEARDEFDSRQYDE
DVNGARRSDSGEAEEGSGGGMENRTRWRQ*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014825DNA_alkylation
IPR016024ARM-type_fold