Gchil1740.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1740.t1
Unique Name	Gchil1740.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	658

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:2075324..2077297 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1740	Gchil1740	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 2075324..2077297 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1740.t1.start1	Gchil1740.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 2075324..2075326 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1740.t1.CDS1	Gchil1740.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 2075324..2077297 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1740.t1.exon1	Gchil1740.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 2075324..2077297 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1740.t1.stop1	Gchil1740.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 2077295..2077297 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1740.t1	Gchil1740.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 2075324..2077297 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:2075324..2077297+
coding sequence from alignment at tig00004403_pilon:2075324..2077297+

mRNA sequence

>Gchil1740.t1 ID=Gchil1740.t1|Name=Gchil1740.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=658bp
MTGKRKRKTSDQPSGSTQTPKRQKLQPRSSSTPKALQTLTNSKVNGLALS
KTSKPSPRTKQSKNHVSVAVTKAVNEAKHLKECKGEARKDLYSSIVDLLT
EALVKDVDSANLEMTPAEVSLSVRDEPIPVHEQCPVTLQSHKLHPQKRPK
KTLSARQKSPSDVGKKGKIPKQVPSKAQKKKAGKETQASKSSKKAHPIAA
TKLKKSKPAPQSSRNSTKPEKRLAKKTASKSPVLKTPRTKLKQPPTETPV
FIEELVVDEGAALVPEPCHSSEKKKKGKKRSVDGYDTEVVLDSSDHDANP
TQQNPKDITLNLRPRLPWWRATESLASLSSNLGNREDLLKLYVMAVIRSC
IRESWSADALKRCFENDPSSSRGKAFLAISSSLLVMERARHMGQCHVKWR
PELMQELLQRRVIEWSRVQKHVSFDHFAGCDVCLGQREATIRLWLRGDRY
DPSDFWPGSSRVEVLTSEEREKDVVSVAVELSGGTKNERFVQISEPAKKG
DVEFWVDPQCLRKCLLFHELVHATAIIAQDLRILIEDELRDGVIHLDMRN
RIPGDEKLGVSERLERYLVQAVSESRDFLKRRTKHLMEIISLGDIYFSAI
EEELIDSGNPEGRRTPKTSQIYDPPIVLNDEKYKDRIDRIVSLTQQRGLT
ASFATFG*

spliced messenger RNA

>Gchil1740.t1 ID=Gchil1740.t1|Name=Gchil1740.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1974bp|location=Sequence derived from alignment at tig00004403_pilon:2075324..2077297+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGGAAAGAGAAAGCGGAAGACTTCTGACCAACCTTCTGGCTCCAC
CCAAACTCCAAAGCGTCAAAAACTCCAACCGAGAAGTTCGTCTACCCCGA
AAGCCCTCCAAACCTTGACAAATTCTAAAGTCAATGGCCTAGCATTGAGC
AAAACATCAAAACCCTCTCCAAGAACGAAACAGTCCAAGAATCATGTCAG
CGTTGCTGTTACAAAAGCGGTAAACGAGGCAAAGCATCTCAAAGAATGCA
AAGGAGAAGCTAGAAAGGATTTGTATTCCAGCATTGTTGACCTGCTTACT
GAAGCCCTCGTGAAGGACGTCGATAGTGCCAACTTAGAGATGACCCCAGC
TGAAGTTTCGCTTTCAGTCAGAGATGAACCAATTCCAGTGCACGAACAGT
GTCCTGTGACCTTGCAATCACATAAACTGCACCCACAAAAGCGACCTAAA
AAAACGCTTTCGGCTCGCCAAAAAAGCCCTTCCGATGTGGGAAAGAAAGG
TAAGATTCCAAAACAAGTTCCGTCGAAAGCACAAAAGAAAAAAGCTGGAA
AAGAGACACAAGCATCAAAATCATCTAAAAAAGCGCACCCCATAGCAGCG
ACTAAACTCAAAAAGTCAAAACCAGCTCCTCAGTCATCACGCAATTCAAC
CAAACCAGAAAAGAGGTTGGCGAAGAAAACTGCTTCCAAATCTCCGGTCT
TGAAGACACCCAGAACTAAATTGAAACAACCACCGACAGAAACACCTGTT
TTCATCGAAGAGCTCGTTGTGGACGAAGGAGCTGCGTTGGTGCCTGAGCC
GTGTCATTCCTCCGAAAAGAAAAAGAAGGGGAAAAAGCGCTCTGTCGATG
GTTACGACACTGAAGTAGTTTTGGATTCTTCCGATCATGATGCAAATCCT
ACTCAACAGAACCCGAAAGATATCACACTCAACCTGAGGCCTCGCCTCCC
ATGGTGGCGTGCGACGGAATCATTGGCTAGCTTGTCTTCCAATCTAGGAA
ATCGAGAAGATTTGTTGAAGTTGTACGTAATGGCTGTCATCAGATCCTGC
ATTCGCGAGTCATGGAGCGCAGATGCCCTGAAGCGTTGTTTCGAAAACGA
TCCATCATCTTCGAGAGGAAAAGCATTTCTGGCGATTAGCTCCAGTTTGT
TGGTTATGGAGCGTGCGAGACACATGGGTCAATGTCACGTAAAATGGAGA
CCAGAGCTGATGCAGGAGCTTTTGCAACGGCGAGTGATAGAATGGTCGAG
AGTCCAAAAGCATGTTTCGTTCGATCATTTTGCGGGCTGTGATGTTTGCC
TTGGTCAGCGTGAAGCCACGATCCGGTTGTGGCTTCGTGGTGATCGATAC
GATCCAAGCGATTTTTGGCCGGGAAGCAGCCGCGTTGAGGTATTGACCTC
CGAAGAGCGAGAAAAAGATGTTGTGTCAGTTGCTGTGGAGCTTTCTGGTG
GAACAAAGAACGAACGTTTCGTTCAAATCAGCGAACCCGCAAAAAAGGGG
GATGTCGAGTTTTGGGTAGACCCCCAGTGCCTGCGAAAGTGTCTCTTATT
TCATGAACTGGTACACGCCACTGCCATTATTGCCCAAGACCTTCGGATTC
TTATTGAGGATGAGCTTCGTGACGGAGTCATTCACTTAGATATGCGCAAT
CGGATACCAGGAGATGAGAAATTGGGAGTTTCCGAGAGACTTGAAAGGTA
TTTAGTTCAGGCCGTGTCTGAGAGCAGAGATTTTCTAAAAAGAAGGACGA
AGCATTTGATGGAAATCATTAGTCTTGGGGACATTTACTTCTCTGCGATA
GAAGAGGAGTTAATTGACTCTGGAAATCCGGAGGGGAGAAGAACTCCAAA
GACGTCGCAGATATACGACCCCCCAATTGTTCTCAATGATGAGAAGTACA
AAGACCGAATCGACAGGATTGTTTCATTAACGCAGCAGCGAGGGTTAACA
GCTTCCTTCGCTACTTTTGGGTAG

protein sequence of Gchil1740.t1

>Gchil1740.t1 ID=Gchil1740.t1|Name=Gchil1740.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=658bp
MTGKRKRKTSDQPSGSTQTPKRQKLQPRSSSTPKALQTLTNSKVNGLALS
KTSKPSPRTKQSKNHVSVAVTKAVNEAKHLKECKGEARKDLYSSIVDLLT
EALVKDVDSANLEMTPAEVSLSVRDEPIPVHEQCPVTLQSHKLHPQKRPK
KTLSARQKSPSDVGKKGKIPKQVPSKAQKKKAGKETQASKSSKKAHPIAA
TKLKKSKPAPQSSRNSTKPEKRLAKKTASKSPVLKTPRTKLKQPPTETPV
FIEELVVDEGAALVPEPCHSSEKKKKGKKRSVDGYDTEVVLDSSDHDANP
TQQNPKDITLNLRPRLPWWRATESLASLSSNLGNREDLLKLYVMAVIRSC
IRESWSADALKRCFENDPSSSRGKAFLAISSSLLVMERARHMGQCHVKWR
PELMQELLQRRVIEWSRVQKHVSFDHFAGCDVCLGQREATIRLWLRGDRY
DPSDFWPGSSRVEVLTSEEREKDVVSVAVELSGGTKNERFVQISEPAKKG
DVEFWVDPQCLRKCLLFHELVHATAIIAQDLRILIEDELRDGVIHLDMRN
RIPGDEKLGVSERLERYLVQAVSESRDFLKRRTKHLMEIISLGDIYFSAI
EEELIDSGNPEGRRTPKTSQIYDPPIVLNDEKYKDRIDRIVSLTQQRGLT
ASFATFG*

mRNA from alignment at tig00004403_pilon:2075324..2077297+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1740.t1 ID=Gchil1740.t1|Name=Gchil1740.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1974bp|location=Sequence derived from alignment at tig00004403_pilon:2075324..2077297+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAGGAAAGAGAAAGCGGAAGACTTCTGACCAACCTTCTGGCTCCAC
CCAAACTCCAAAGCGTCAAAAACTCCAACCGAGAAGTTCGTCTACCCCGA
AAGCCCTCCAAACCTTGACAAATTCTAAAGTCAATGGCCTAGCATTGAGC
AAAACATCAAAACCCTCTCCAAGAACGAAACAGTCCAAGAATCATGTCAG
CGTTGCTGTTACAAAAGCGGTAAACGAGGCAAAGCATCTCAAAGAATGCA
AAGGAGAAGCTAGAAAGGATTTGTATTCCAGCATTGTTGACCTGCTTACT
GAAGCCCTCGTGAAGGACGTCGATAGTGCCAACTTAGAGATGACCCCAGC
TGAAGTTTCGCTTTCAGTCAGAGATGAACCAATTCCAGTGCACGAACAGT
GTCCTGTGACCTTGCAATCACATAAACTGCACCCACAAAAGCGACCTAAA
AAAACGCTTTCGGCTCGCCAAAAAAGCCCTTCCGATGTGGGAAAGAAAGG
TAAGATTCCAAAACAAGTTCCGTCGAAAGCACAAAAGAAAAAAGCTGGAA
AAGAGACACAAGCATCAAAATCATCTAAAAAAGCGCACCCCATAGCAGCG
ACTAAACTCAAAAAGTCAAAACCAGCTCCTCAGTCATCACGCAATTCAAC
CAAACCAGAAAAGAGGTTGGCGAAGAAAACTGCTTCCAAATCTCCGGTCT
TGAAGACACCCAGAACTAAATTGAAACAACCACCGACAGAAACACCTGTT
TTCATCGAAGAGCTCGTTGTGGACGAAGGAGCTGCGTTGGTGCCTGAGCC
GTGTCATTCCTCCGAAAAGAAAAAGAAGGGGAAAAAGCGCTCTGTCGATG
GTTACGACACTGAAGTAGTTTTGGATTCTTCCGATCATGATGCAAATCCT
ACTCAACAGAACCCGAAAGATATCACACTCAACCTGAGGCCTCGCCTCCC
ATGGTGGCGTGCGACGGAATCATTGGCTAGCTTGTCTTCCAATCTAGGAA
ATCGAGAAGATTTGTTGAAGTTGTACGTAATGGCTGTCATCAGATCCTGC
ATTCGCGAGTCATGGAGCGCAGATGCCCTGAAGCGTTGTTTCGAAAACGA
TCCATCATCTTCGAGAGGAAAAGCATTTCTGGCGATTAGCTCCAGTTTGT
TGGTTATGGAGCGTGCGAGACACATGGGTCAATGTCACGTAAAATGGAGA
CCAGAGCTGATGCAGGAGCTTTTGCAACGGCGAGTGATAGAATGGTCGAG
AGTCCAAAAGCATGTTTCGTTCGATCATTTTGCGGGCTGTGATGTTTGCC
TTGGTCAGCGTGAAGCCACGATCCGGTTGTGGCTTCGTGGTGATCGATAC
GATCCAAGCGATTTTTGGCCGGGAAGCAGCCGCGTTGAGGTATTGACCTC
CGAAGAGCGAGAAAAAGATGTTGTGTCAGTTGCTGTGGAGCTTTCTGGTG
GAACAAAGAACGAACGTTTCGTTCAAATCAGCGAACCCGCAAAAAAGGGG
GATGTCGAGTTTTGGGTAGACCCCCAGTGCCTGCGAAAGTGTCTCTTATT
TCATGAACTGGTACACGCCACTGCCATTATTGCCCAAGACCTTCGGATTC
TTATTGAGGATGAGCTTCGTGACGGAGTCATTCACTTAGATATGCGCAAT
CGGATACCAGGAGATGAGAAATTGGGAGTTTCCGAGAGACTTGAAAGGTA
TTTAGTTCAGGCCGTGTCTGAGAGCAGAGATTTTCTAAAAAGAAGGACGA
AGCATTTGATGGAAATCATTAGTCTTGGGGACATTTACTTCTCTGCGATA
GAAGAGGAGTTAATTGACTCTGGAAATCCGGAGGGGAGAAGAACTCCAAA
GACGTCGCAGATATACGACCCCCCAATTGTTCTCAATGATGAGAAGTACA
AAGACCGAATCGACAGGATTGTTTCATTAACGCAGCAGCGAGGGTTAACA
GCTTCCTTCGCTACTTTTGGGTAG

Coding sequence (CDS) from alignment at tig00004403_pilon:2075324..2077297+

>Gchil1740.t1 ID=Gchil1740.t1|Name=Gchil1740.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1974bp|location=Sequence derived from alignment at tig00004403_pilon:2075324..2077297+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAGGAAAGAGAAAGCGGAAGACTTCTGACCAACCTTCTGGCTCCAC
CCAAACTCCAAAGCGTCAAAAACTCCAACCGAGAAGTTCGTCTACCCCGA
AAGCCCTCCAAACCTTGACAAATTCTAAAGTCAATGGCCTAGCATTGAGC
AAAACATCAAAACCCTCTCCAAGAACGAAACAGTCCAAGAATCATGTCAG
CGTTGCTGTTACAAAAGCGGTAAACGAGGCAAAGCATCTCAAAGAATGCA
AAGGAGAAGCTAGAAAGGATTTGTATTCCAGCATTGTTGACCTGCTTACT
GAAGCCCTCGTGAAGGACGTCGATAGTGCCAACTTAGAGATGACCCCAGC
TGAAGTTTCGCTTTCAGTCAGAGATGAACCAATTCCAGTGCACGAACAGT
GTCCTGTGACCTTGCAATCACATAAACTGCACCCACAAAAGCGACCTAAA
AAAACGCTTTCGGCTCGCCAAAAAAGCCCTTCCGATGTGGGAAAGAAAGG
TAAGATTCCAAAACAAGTTCCGTCGAAAGCACAAAAGAAAAAAGCTGGAA
AAGAGACACAAGCATCAAAATCATCTAAAAAAGCGCACCCCATAGCAGCG
ACTAAACTCAAAAAGTCAAAACCAGCTCCTCAGTCATCACGCAATTCAAC
CAAACCAGAAAAGAGGTTGGCGAAGAAAACTGCTTCCAAATCTCCGGTCT
TGAAGACACCCAGAACTAAATTGAAACAACCACCGACAGAAACACCTGTT
TTCATCGAAGAGCTCGTTGTGGACGAAGGAGCTGCGTTGGTGCCTGAGCC
GTGTCATTCCTCCGAAAAGAAAAAGAAGGGGAAAAAGCGCTCTGTCGATG
GTTACGACACTGAAGTAGTTTTGGATTCTTCCGATCATGATGCAAATCCT
ACTCAACAGAACCCGAAAGATATCACACTCAACCTGAGGCCTCGCCTCCC
ATGGTGGCGTGCGACGGAATCATTGGCTAGCTTGTCTTCCAATCTAGGAA
ATCGAGAAGATTTGTTGAAGTTGTACGTAATGGCTGTCATCAGATCCTGC
ATTCGCGAGTCATGGAGCGCAGATGCCCTGAAGCGTTGTTTCGAAAACGA
TCCATCATCTTCGAGAGGAAAAGCATTTCTGGCGATTAGCTCCAGTTTGT
TGGTTATGGAGCGTGCGAGACACATGGGTCAATGTCACGTAAAATGGAGA
CCAGAGCTGATGCAGGAGCTTTTGCAACGGCGAGTGATAGAATGGTCGAG
AGTCCAAAAGCATGTTTCGTTCGATCATTTTGCGGGCTGTGATGTTTGCC
TTGGTCAGCGTGAAGCCACGATCCGGTTGTGGCTTCGTGGTGATCGATAC
GATCCAAGCGATTTTTGGCCGGGAAGCAGCCGCGTTGAGGTATTGACCTC
CGAAGAGCGAGAAAAAGATGTTGTGTCAGTTGCTGTGGAGCTTTCTGGTG
GAACAAAGAACGAACGTTTCGTTCAAATCAGCGAACCCGCAAAAAAGGGG
GATGTCGAGTTTTGGGTAGACCCCCAGTGCCTGCGAAAGTGTCTCTTATT
TCATGAACTGGTACACGCCACTGCCATTATTGCCCAAGACCTTCGGATTC
TTATTGAGGATGAGCTTCGTGACGGAGTCATTCACTTAGATATGCGCAAT
CGGATACCAGGAGATGAGAAATTGGGAGTTTCCGAGAGACTTGAAAGGTA
TTTAGTTCAGGCCGTGTCTGAGAGCAGAGATTTTCTAAAAAGAAGGACGA
AGCATTTGATGGAAATCATTAGTCTTGGGGACATTTACTTCTCTGCGATA
GAAGAGGAGTTAATTGACTCTGGAAATCCGGAGGGGAGAAGAACTCCAAA
GACGTCGCAGATATACGACCCCCCAATTGTTCTCAATGATGAGAAGTACA
AAGACCGAATCGACAGGATTGTTTCATTAACGCAGCAGCGAGGGTTAACA
GCTTCCTTCGCTACTTTTGGGTAG