Gchil1710.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1710.t1
Unique NameGchil1710.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length253
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1946659..1947417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6500.XP_005111675.1
Preferred nameWDR36
PFAMsANAPC4_WD40,Utp21,WD40
Max annot lvl33208|Metazoa
KEGG koko:K14554
KEGG Pathwayko03008,map03008
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034388,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
Evalue3.05e-24
EggNOG OGsKOG1539@1|root,KOG1539@2759|Eukaryota,38CGQ@33154|Opisthokonta,3BD2P@33208|Metazoa,3CYJD@33213|Bilateria
DescriptionWD repeat domain 36
COG categoryS
BRITEko00000,ko00001,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1710Gchil1710Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1946659..1947417 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1710.t1.stop1Gchil1710.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1946659..1946661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1710.t1.CDS1Gchil1710.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1946659..1947417 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1710.t1.exon1Gchil1710.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1946659..1947417 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1710.t1.start1Gchil1710.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1947415..1947417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1710.t1Gchil1710.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1946659..1947417 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1710.t1 ID=Gchil1710.t1|Name=Gchil1710.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=253bp
MRAPLNVEDQDTEADEESDTDSEMQNYEEGMRDIPTDEGKGVPLSEEIIT
LSTEPTSKWTVLSNLQAIKERNKPIEPPKKGESAPFFIPTKKSLQLEFDL
NAENKANFTGDGKSDSQQGKIRKVLMNGNEEGWMNSTLGNLLLETRFHDA
TRFMNSLDASGVDMEIRTMGGRRTLRNAALFFVERLGSSQGFELTQAHLG
VFLRVHGGELAKDEEGSGLLQKLLDEQREAWDRLRCLFDSVLSLSAHFSG
QL*
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spliced messenger RNA

>Gchil1710.t1 ID=Gchil1710.t1|Name=Gchil1710.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00004403_pilon:1946659..1947417- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGCTCCTCTGAATGTAGAGGATCAAGACACGGAAGCAGACGAGGA
AAGTGATACAGATTCCGAAATGCAAAACTATGAGGAAGGTATGAGAGACA
TACCCACAGATGAAGGGAAAGGTGTTCCCTTATCCGAAGAAATCATTACT
CTGAGCACAGAGCCAACCTCGAAGTGGACTGTGTTAAGCAACCTGCAAGC
AATCAAAGAAAGAAACAAGCCGATAGAACCCCCGAAGAAGGGTGAGTCTG
CGCCTTTCTTTATTCCAACCAAGAAGTCACTTCAGCTAGAGTTTGATCTA
AACGCCGAAAACAAAGCAAATTTCACGGGAGACGGTAAAAGTGACTCGCA
ACAAGGCAAGATTAGAAAAGTGCTCATGAATGGAAACGAAGAAGGCTGGA
TGAACAGCACCCTAGGCAATTTGTTGCTGGAAACGCGGTTTCATGATGCC
ACCCGTTTTATGAACTCTTTAGATGCATCAGGTGTTGACATGGAAATTCG
TACAATGGGTGGGCGACGAACTCTGCGAAACGCAGCGCTGTTTTTCGTCG
AGCGGCTTGGTAGCTCTCAAGGATTCGAACTCACGCAAGCACATCTCGGT
GTATTCTTACGTGTTCATGGAGGCGAGCTTGCAAAAGACGAAGAAGGGAG
CGGGCTGCTACAAAAGTTACTTGATGAGCAAAGAGAGGCTTGGGATAGAT
TGCGGTGTCTGTTTGACTCTGTGCTTTCTCTATCGGCTCACTTTTCCGGA
CAGCTCTGA
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protein sequence of Gchil1710.t1

>Gchil1710.t1 ID=Gchil1710.t1|Name=Gchil1710.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=253bp
MRAPLNVEDQDTEADEESDTDSEMQNYEEGMRDIPTDEGKGVPLSEEIIT
LSTEPTSKWTVLSNLQAIKERNKPIEPPKKGESAPFFIPTKKSLQLEFDL
NAENKANFTGDGKSDSQQGKIRKVLMNGNEEGWMNSTLGNLLLETRFHDA
TRFMNSLDASGVDMEIRTMGGRRTLRNAALFFVERLGSSQGFELTQAHLG
VFLRVHGGELAKDEEGSGLLQKLLDEQREAWDRLRCLFDSVLSLSAHFSG
QL*
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mRNA from alignment at tig00004403_pilon:1946659..1947417-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1710.t1 ID=Gchil1710.t1|Name=Gchil1710.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00004403_pilon:1946659..1947417- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTGCTCCTCTGAATGTAGAGGATCAAGACACGGAAGCAGACGAGGA
AAGTGATACAGATTCCGAAATGCAAAACTATGAGGAAGGTATGAGAGACA
TACCCACAGATGAAGGGAAAGGTGTTCCCTTATCCGAAGAAATCATTACT
CTGAGCACAGAGCCAACCTCGAAGTGGACTGTGTTAAGCAACCTGCAAGC
AATCAAAGAAAGAAACAAGCCGATAGAACCCCCGAAGAAGGGTGAGTCTG
CGCCTTTCTTTATTCCAACCAAGAAGTCACTTCAGCTAGAGTTTGATCTA
AACGCCGAAAACAAAGCAAATTTCACGGGAGACGGTAAAAGTGACTCGCA
ACAAGGCAAGATTAGAAAAGTGCTCATGAATGGAAACGAAGAAGGCTGGA
TGAACAGCACCCTAGGCAATTTGTTGCTGGAAACGCGGTTTCATGATGCC
ACCCGTTTTATGAACTCTTTAGATGCATCAGGTGTTGACATGGAAATTCG
TACAATGGGTGGGCGACGAACTCTGCGAAACGCAGCGCTGTTTTTCGTCG
AGCGGCTTGGTAGCTCTCAAGGATTCGAACTCACGCAAGCACATCTCGGT
GTATTCTTACGTGTTCATGGAGGCGAGCTTGCAAAAGACGAAGAAGGGAG
CGGGCTGCTACAAAAGTTACTTGATGAGCAAAGAGAGGCTTGGGATAGAT
TGCGGTGTCTGTTTGACTCTGTGCTTTCTCTATCGGCTCACTTTTCCGGA
CAGCTCTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1946659..1947417-

>Gchil1710.t1 ID=Gchil1710.t1|Name=Gchil1710.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=759bp|location=Sequence derived from alignment at tig00004403_pilon:1946659..1947417- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTGCTCCTCTGAATGTAGAGGATCAAGACACGGAAGCAGACGAGGA
AAGTGATACAGATTCCGAAATGCAAAACTATGAGGAAGGTATGAGAGACA
TACCCACAGATGAAGGGAAAGGTGTTCCCTTATCCGAAGAAATCATTACT
CTGAGCACAGAGCCAACCTCGAAGTGGACTGTGTTAAGCAACCTGCAAGC
AATCAAAGAAAGAAACAAGCCGATAGAACCCCCGAAGAAGGGTGAGTCTG
CGCCTTTCTTTATTCCAACCAAGAAGTCACTTCAGCTAGAGTTTGATCTA
AACGCCGAAAACAAAGCAAATTTCACGGGAGACGGTAAAAGTGACTCGCA
ACAAGGCAAGATTAGAAAAGTGCTCATGAATGGAAACGAAGAAGGCTGGA
TGAACAGCACCCTAGGCAATTTGTTGCTGGAAACGCGGTTTCATGATGCC
ACCCGTTTTATGAACTCTTTAGATGCATCAGGTGTTGACATGGAAATTCG
TACAATGGGTGGGCGACGAACTCTGCGAAACGCAGCGCTGTTTTTCGTCG
AGCGGCTTGGTAGCTCTCAAGGATTCGAACTCACGCAAGCACATCTCGGT
GTATTCTTACGTGTTCATGGAGGCGAGCTTGCAAAAGACGAAGAAGGGAG
CGGGCTGCTACAAAAGTTACTTGATGAGCAAAGAGAGGCTTGGGATAGAT
TGCGGTGTCTGTTTGACTCTGTGCTTTCTCTATCGGCTCACTTTTCCGGA
CAGCTCTGA
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