Gchil1650.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1650.t1
Unique NameGchil1650.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length166
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1403874..1404371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT583CT
Preferred namePOLR2D
PFAMsRNA_pol_Rpb4
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03012,ko:K11314
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
GOsGO:0000288,GO:0000375,GO:0000377,GO:0000398,GO:0000428,GO:0000932,GO:0000956,GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005694,GO:0005700,GO:0005705,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006354,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006446,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0008543,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009266,GO:0009301,GO:0009408,GO:0009452,GO:0009628,GO:0009719,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0030880,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031369,GO:0031503,GO:0031974,GO:0031981,GO:0031990,GO:0032268,GO:0032270,GO:0032774,GO:0032991,GO:0033036,GO:0033554,GO:0034062,GO:0034248,GO:0034250,GO:0034402,GO:0034605,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035770,GO:0036260,GO:0036464,GO:0042221,GO:0042795,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045727,GO:0045948,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0071166,GO:0071310,GO:0071363,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071774,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0097747,GO:0098687,GO:0098781,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576,GO:1902494,GO:1990234,GO:1990904,GO:2000112
Evalue4.61e-19
EggNOG OGsCOG5250@1|root,KOG2351@2759|Eukaryota
Descriptionrecruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03036,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1650Gchil1650Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1403874..1404371 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1650.t1.start1Gchil1650.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1403874..1403876 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1650.t1.CDS1Gchil1650.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1403874..1404371 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1650.t1.exon1Gchil1650.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1403874..1404371 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1650.t1.stop1Gchil1650.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1404369..1404371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1650.t1Gchil1650.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1403874..1404371 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1650.t1 ID=Gchil1650.t1|Name=Gchil1650.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=166bp
MIKPEDEIENTFLAEGNGRKEEEDEEGEEEYVTIPPSEEDASTLKFSYEF
TLEGHAQPLFISEVGHLLKVHVEKQERRLGDLNVVLRKSLDYAERFGQLA
KTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIVPSLAARYD
DDVISDILKNFEVWL*
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spliced messenger RNA

>Gchil1650.t1 ID=Gchil1650.t1|Name=Gchil1650.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=498bp|location=Sequence derived from alignment at tig00004403_pilon:1403874..1404371+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTAAACCAGAAGATGAAATCGAGAATACTTTCCTTGCCGAAGGAAA
TGGGCgaaaggaggaagaagacgaagagggagaggaagagTATGTCACCA
TTCCCCCTTCCGAAGAAGACGCTTCCACGCTAAAATTTAGCTACGAGTTT
ACCCTTGAGGGCCACGCGCAACCGTTGTTTATTTCGGAGGTGGGACATCT
GCTCAAAGTCCACGTAGAGAAACAAGAAAGAAGATTAGGAGATCTCAATG
TGGTACTTCGAAAGTCTCTGGATTACGCCGAGCGGTTCGGTCAACTTGCA
AAAACGGAACAATCAATAGCTGTGCGCGCGCAGCTAGAAGCTGTGAACCC
GAAATTGCATGAATTCGAAGTTGCACAACTGGCTAGTTTAATGCCTAAGG
AGGTTGACGAGGCGAAAGCGATTGTTCCCAGTCTGGCTGCTCGGTACGAT
GATGACGTTATTTCTGATATTCTGAAGAACTTTGAGGTTTGGTTATGA
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protein sequence of Gchil1650.t1

>Gchil1650.t1 ID=Gchil1650.t1|Name=Gchil1650.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=166bp
MIKPEDEIENTFLAEGNGRKEEEDEEGEEEYVTIPPSEEDASTLKFSYEF
TLEGHAQPLFISEVGHLLKVHVEKQERRLGDLNVVLRKSLDYAERFGQLA
KTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIVPSLAARYD
DDVISDILKNFEVWL*
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mRNA from alignment at tig00004403_pilon:1403874..1404371+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1650.t1 ID=Gchil1650.t1|Name=Gchil1650.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=498bp|location=Sequence derived from alignment at tig00004403_pilon:1403874..1404371+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTAAACCAGAAGATGAAATCGAGAATACTTTCCTTGCCGAAGGAAA
TGGGCgaaaggaggaagaagacgaagagggagaggaagagTATGTCACCA
TTCCCCCTTCCGAAGAAGACGCTTCCACGCTAAAATTTAGCTACGAGTTT
ACCCTTGAGGGCCACGCGCAACCGTTGTTTATTTCGGAGGTGGGACATCT
GCTCAAAGTCCACGTAGAGAAACAAGAAAGAAGATTAGGAGATCTCAATG
TGGTACTTCGAAAGTCTCTGGATTACGCCGAGCGGTTCGGTCAACTTGCA
AAAACGGAACAATCAATAGCTGTGCGCGCGCAGCTAGAAGCTGTGAACCC
GAAATTGCATGAATTCGAAGTTGCACAACTGGCTAGTTTAATGCCTAAGG
AGGTTGACGAGGCGAAAGCGATTGTTCCCAGTCTGGCTGCTCGGTACGAT
GATGACGTTATTTCTGATATTCTGAAGAACTTTGAGGTTTGGTTATGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1403874..1404371+

>Gchil1650.t1 ID=Gchil1650.t1|Name=Gchil1650.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=498bp|location=Sequence derived from alignment at tig00004403_pilon:1403874..1404371+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTAAACCAGAAGATGAAATCGAGAATACTTTCCTTGCCGAAGGAAA
TGGGCgaaaggaggaagaagacgaagagggagaggaagagTATGTCACCA
TTCCCCCTTCCGAAGAAGACGCTTCCACGCTAAAATTTAGCTACGAGTTT
ACCCTTGAGGGCCACGCGCAACCGTTGTTTATTTCGGAGGTGGGACATCT
GCTCAAAGTCCACGTAGAGAAACAAGAAAGAAGATTAGGAGATCTCAATG
TGGTACTTCGAAAGTCTCTGGATTACGCCGAGCGGTTCGGTCAACTTGCA
AAAACGGAACAATCAATAGCTGTGCGCGCGCAGCTAGAAGCTGTGAACCC
GAAATTGCATGAATTCGAAGTTGCACAACTGGCTAGTTTAATGCCTAAGG
AGGTTGACGAGGCGAAAGCGATTGTTCCCAGTCTGGCTGCTCGGTACGAT
GATGACGTTATTTCTGATATTCTGAAGAACTTTGAGGTTTGGTTATGA
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