Gchil1650.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil1650.t1
Unique NameGchil1650.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length166
Homology
BLAST of Gchil1650.t1 vs. uniprot
Match: R7Q1N9_CHOCR (RPOL4c domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q1N9_CHOCR)

HSP 1 Score: 137 bits (344), Expect = 3.630e-38
Identity = 72/132 (54.55%), Postives = 95/132 (71.97%), Query Frame = 0
Query:   34 IPPSEEDASTLKFSYEFTLEGHAQPLFISEVGHLLKVHVEKQERRLGDLNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIVPSLAARYDDDVISDILKNFEVWL 165
            +   +EDA+ L+F  EF  E   QPLF +EV  LLK+H EK +    + N +L  SL++ ERFGQ+  T+ +I VR QL+ V P+LH FEVAQLASLMPK+ +EAKAI+PSLAA YDDDV+++ILKN + WL
Sbjct:   33 VRSGDEDAAKLEFGAEFD-EQKGQPLFTAEVLQLLKLHKEKNQHVQVN-NRLLEPSLEHCERFGQIETTDAAIMVREQLQKVEPRLHPFEVAQLASLMPKDAEEAKAIIPSLAANYDDDVLNEILKNMDAWL 162          
BLAST of Gchil1650.t1 vs. uniprot
Match: M1VIP7_CYAM1 (RNA polymerase II subunit n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VIP7_CYAM1)

HSP 1 Score: 89.4 bits (220), Expect = 8.500e-20
Identity = 54/124 (43.55%), Postives = 70/124 (56.45%), Query Frame = 0
Query:   38 EEDASTLKFSYEFTLEGHAQPLFISEVGHLLKV-HVEKQERRLGDLNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIVPSLAARYDDDVISDILKN 160
            EE+A  LKF   F    H QPL I EV  LL+    E        L  +  KS  Y ERF Q    E +  VR +LE  +P+LH FE AQLA+L+P+   EAKAI+PSL  + DDDV+  +L++
Sbjct:    8 EENAENLKFGELFGDNEHCQPLLICEVAELLRQKRAELPAELQSSLGPIFVKSEAYVERFNQFRSAEVAKVVRVRLER-HPELHPFERAQLANLLPETPAEAKAIIPSLKGKLDDDVLGQLLRD 130          
BLAST of Gchil1650.t1 vs. uniprot
Match: A0A7M7RGR9_STRPU (RPOL4c domain-containing protein n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7RGR9_STRPU)

HSP 1 Score: 88.6 bits (218), Expect = 1.980e-19
Identity = 55/128 (42.97%), Postives = 77/128 (60.16%), Query Frame = 0
Query:   38 EEDASTLKFSYEFTLEGHAQPLFISEVGHLL---KVHVEKQERRLGDLNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIVPSLAARYDDDVISDILKNFE 162
            EEDAS LKF   F     A+ L ISEV  LL   K   E QE    +L+ V  K+L+Y  RF +    E    VR  L+   PKLH+FE+A LA+L P+  +EAKA++PSL  R++DD ++++L+N +
Sbjct:   12 EEDASELKFPKVFE---QAETLLISEVQMLLQHRKQQNESQEEEQ-ELSEVFMKTLNYTGRFSRFKNRETIGDVRGLLQQQQPKLHKFELALLANLCPETAEEAKALIPSLEGRFEDDELTEVLENMQ 135          
BLAST of Gchil1650.t1 vs. uniprot
Match: S4RJW7_PETMA (Polymerase (RNA) II (DNA directed) polypeptide D n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4RJW7_PETMA)

HSP 1 Score: 86.7 bits (213), Expect = 1.140e-18
Identity = 53/128 (41.41%), Postives = 80/128 (62.50%), Query Frame = 0
Query:   38 EEDASTLKFSYEFTLEGHAQPLFISEVGHLLKVHVEKQERRLGD---LNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIVPSLAARYDDDVISDILKNFE 162
            EEDAS L+F+ EF    +A+ L ISEV H+L  H ++Q     D   L+ +  K+L+Y  RF +  K E   +VR+ L  +  KLH+FE+A LA+L P+  +EAKA++PSL  R++DD +  IL + +
Sbjct:   15 EEDASQLQFAKEFE---NAETLLISEV-HMLLEHRKQQNESAEDEQELSELFMKTLNYTGRFSRFTKRETIASVRSLL--LQKKLHKFELASLANLCPETAEEAKALIPSLEGRFEDDELQQILDDIQ 136          
BLAST of Gchil1650.t1 vs. uniprot
Match: UPI0014255839 (DNA-directed RNA polymerase II subunit RPB4-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014255839)

HSP 1 Score: 85.9 bits (211), Expect = 1.890e-18
Identity = 55/128 (42.97%), Postives = 76/128 (59.38%), Query Frame = 0
Query:   38 EEDASTLKFSYEFTLEGHAQPLFISEVGHLL---KVHVEKQERRLGDLNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIVPSLAARYDDDVISDILKNFE 162
            EEDAS LKF  EF     A+ L ISEV  LL   K   E QE    +L+ V  K+L Y ERF +    E    VR+ ++    +LH+FEVA LA+L P   DEA+A+VPSL  R+DD+ + ++++N +
Sbjct:    8 EEDASELKFPKEFE---QAETLLISEVRMLLEHRKTQNENQEEEQ-ELSEVFMKTLQYTERFSRFKNRETIADVRSLMK--QKQLHKFEVASLANLCPDTADEARALVPSLEGRFDDEDLQEMMENIQ 129          
BLAST of Gchil1650.t1 vs. uniprot
Match: T1J3Q6_STRMM (RPOL4c domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J3Q6_STRMM)

HSP 1 Score: 85.5 bits (210), Expect = 3.110e-18
Identity = 56/134 (41.79%), Postives = 80/134 (59.70%), Query Frame = 0
Query:   32 VTIPPSEEDASTLKFSYEFTLEGHAQPLFISEVGHLLKVHVEKQERRLGD---LNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIVPSLAARYDDDVISDILKNFE 162
            V    +EEDAS L+F  EF    +A+ L ISEV H+L  H + Q     +   L+ V  K+L+Y +RF +    E   AVR+ L     KLH+FE+AQLA+L P   +EAKA+VPSL  R+++D +S IL + +
Sbjct:    8 VQAEQTEEDASELQFPKEFE---NAETLLISEV-HMLLDHRKTQNESAEEEQELSDVFMKTLNYTQRFSRFKNRETISAVRSLL--TQKKLHKFELAQLANLCPDNPEEAKALVPSLEGRFEEDELSQILDDIQ 135          
BLAST of Gchil1650.t1 vs. uniprot
Match: UPI000719D388 (DNA-directed RNA polymerase II subunit RPB4-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719D388)

HSP 1 Score: 85.1 bits (209), Expect = 4.380e-18
Identity = 54/135 (40.00%), Postives = 79/135 (58.52%), Query Frame = 0
Query:   32 VTIPPS--EEDASTLKFSYEFTLEGHAQPLFISEVGHLLKVHVEKQERRLGD--LNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIVPSLAARYDDDVISDILKNFE 162
            VT+P    EEDAS+L+F  EF    +A+ L ISEV  LL+      E    +  L+ V  K+ +Y ERF +    E   AVR  L+    KLH+FE+A +A+L P+  +EAKA++PSL  R++DD +  IL + +
Sbjct:    6 VTLPNDLIEEDASSLQFPKEFE---NAETLLISEVFMLLEHRKSNNENAEDEQELSDVFMKTFNYTERFSKFKNRETIAAVRKSLQ--EKKLHKFELASIANLCPENAEEAKALIPSLEGRFEDDELQQILDDIQ 135          
BLAST of Gchil1650.t1 vs. uniprot
Match: UPI0006B09510 (DNA-directed RNA polymerase II subunit RPB4-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B09510)

HSP 1 Score: 84.7 bits (208), Expect = 6.840e-18
Identity = 53/128 (41.41%), Postives = 80/128 (62.50%), Query Frame = 0
Query:   38 EEDASTLKFSYEFTLEGHAQPLFISEVGHLLKVHVEKQERRLGD---LNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIVPSLAARYDDDVISDILKNFE 162
            EEDAS L+F  EF    +A+ L ISEV H+L  H ++Q     +   L+ V  K+LDY ++F +    E   AVR+ L  +  KLH+FE+AQLA+L P+  +EAKA++PSL  R++D+ +  IL + +
Sbjct:   15 EEDASELQFPKEFE---NAETLLISEV-HMLLEHRKQQNESAEEEQELSEVFLKTLDYCQQFSRYKNRETIAAVRSLL--MQKKLHKFELAQLANLAPETPEEAKALIPSLEGRFEDEELRQILDDIQ 136          
BLAST of Gchil1650.t1 vs. uniprot
Match: A0A293LJQ5_ORNER (RPOL4c domain-containing protein (Fragment) n=2 Tax=Ornithodoros TaxID=6937 RepID=A0A293LJQ5_ORNER)

HSP 1 Score: 84.3 bits (207), Expect = 9.170e-18
Identity = 56/130 (43.08%), Postives = 77/130 (59.23%), Query Frame = 0
Query:   34 IPPSEEDASTLKFSYEFTLEGHAQPLFISEVGHLL---KVHVEKQERRLGDLNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIVPSLAARYDDDVISDILKN 160
            I   EEDAS L+F  EF    +A+ L ISEV  LL   K   E  E    +L+ V  K+L+Y +RF ++   E   AVR  L     KLH+FE+AQLA+L P   +EAKA++PSL  R++DD +  IL++
Sbjct:   12 IEQVEEDASELQFPKEFE---NAESLLISEVNMLLEHRKTQNENAEEEQ-ELSEVFTKTLNYCQRFSRIKNRETIAAVRNLL--TQKKLHKFELAQLANLCPDNPEEAKALIPSLEGRFEDDDLRQILED 135          
BLAST of Gchil1650.t1 vs. uniprot
Match: A0A6G0V286_9BILA (RPOL4c domain-containing protein n=1 Tax=Halicephalobus sp. NKZ332 TaxID=2598192 RepID=A0A6G0V286_9BILA)

HSP 1 Score: 84.3 bits (207), Expect = 1.010e-17
Identity = 53/136 (38.97%), Postives = 80/136 (58.82%), Query Frame = 0
Query:   34 IPPS-------EEDASTLKFSYEFTLEGHAQPLFISEVGHLL--KVHVEKQERRLGDLNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIVPSLAARYDDDVISDILKN 160
            +PPS       EEDAS LKF  EF  EG    L ISEV  LL  +    +Q+  + D++ V  K++DY  R  +    +   +VRA   A N  LH+FE+AQL +L P+  +EAKA++PSL ++ DD+ + ++L++
Sbjct:    7 LPPSGVSKDAQEEDASELKFPPEFDREG-CDALLISEVFLLLDHRRRQGEQKEEIEDISEVFLKTIDYCRRLSRFKTRDTIRSVRAIFTACN-NLHKFEIAQLINLCPENAEEAKALIPSLESKIDDEELDNLLRD 140          
The following BLAST results are available for this feature:
BLAST of Gchil1650.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7Q1N9_CHOCR3.630e-3854.55RPOL4c domain-containing protein n=1 Tax=Chondrus ... [more]
M1VIP7_CYAM18.500e-2043.55RNA polymerase II subunit n=1 Tax=Cyanidioschyzon ... [more]
A0A7M7RGR9_STRPU1.980e-1942.97RPOL4c domain-containing protein n=2 Tax=Echinacea... [more]
S4RJW7_PETMA1.140e-1841.41Polymerase (RNA) II (DNA directed) polypeptide D n... [more]
UPI00142558391.890e-1842.97DNA-directed RNA polymerase II subunit RPB4-like n... [more]
T1J3Q6_STRMM3.110e-1841.79RPOL4c domain-containing protein n=1 Tax=Strigamia... [more]
UPI000719D3884.380e-1840.00DNA-directed RNA polymerase II subunit RPB4-like n... [more]
UPI0006B095106.840e-1841.41DNA-directed RNA polymerase II subunit RPB4-like n... [more]
A0A293LJQ5_ORNER9.170e-1843.08RPOL4c domain-containing protein (Fragment) n=2 Ta... [more]
A0A6G0V286_9BILA1.010e-1738.97RPOL4c domain-containing protein n=1 Tax=Halicepha... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006590RNA polymerase Rpb4/RPC9, coreSMARTSM00657rpol4neu2coord: 51..162
e-value: 2.3E-10
score: 50.5
IPR005574RNA polymerase subunit Rpb4/RPC9PFAMPF03874RNA_pol_Rpb4coord: 73..159
e-value: 8.2E-17
score: 61.7
IPR038324Rpb4/RPC9 superfamilyGENE3D1.20.1250.40coord: 36..163
e-value: 4.1E-29
score: 103.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availablePANTHERPTHR21297:SF0DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4coord: 33..160
IPR045222DNA-directed RNA polymerase II subunit Rpb4-likePANTHERPTHR21297DNA-DIRECTED RNA POLYMERASE IIcoord: 33..160
IPR010997HRDC-like superfamilySUPERFAMILY47819HRDC-likecoord: 36..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1403874..1404371 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1650.t1Gchil1650.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004403_pilon 1403874..1404371 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil1650.t1 ID=Gchil1650.t1|Name=Gchil1650.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=166bp
MIKPEDEIENTFLAEGNGRKEEEDEEGEEEYVTIPPSEEDASTLKFSYEF
TLEGHAQPLFISEVGHLLKVHVEKQERRLGDLNVVLRKSLDYAERFGQLA
KTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIVPSLAARYD
DDVISDILKNFEVWL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006590RNA_pol_Rpb4/RPC9_core
IPR005574Rpb4/RPC9
IPR038324Rpb4/RPC9_sf
IPR045222Rpb4-like
IPR010997HRDC-like_sf