Gchil1543.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1543.t1
Unique NameGchil1543.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length257
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:824971..825741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705246.1
Preferred nameMRPS2
PFAMsRibosomal_S2,UDPGP
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00963,ko:K01535,ko:K02967
KEGG TC3.A.3.3
KEGG ReactionR00289
KEGG Pathwayko00040,ko00052,ko00190,ko00500,ko00520,ko01100,ko01130,ko03010,map00040,map00052,map00190,map00500,map00520,map01100,map01130,map03010
KEGG ModuleM00129,M00178,M00179,M00361,M00362,M00549
GOsGO:0000049,GO:0000313,GO:0000314,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0097159,GO:0098798,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue7.28e-58
EggNOG OGsCOG0052@1|root,KOG0832@2759|Eukaryota
EC2.7.7.9,3.6.3.6
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1543Gchil1543Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 824971..825741 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1543.t1.stop1Gchil1543.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 824971..824973 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1543.t1.CDS1Gchil1543.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 824971..825741 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1543.t1.exon1Gchil1543.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 824971..825741 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1543.t1.start1Gchil1543.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 825739..825741 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1543.t1Gchil1543.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 824971..825741 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1543.t1 ID=Gchil1543.t1|Name=Gchil1543.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=257bp
MAFQHSLKLVRQFSSAVSSASGPLSAADLMSSPKLASSANSIFHQYSVKD
LMDARVHMGHRTKLWNPKMAPYLLGHRNGMHVIDLDKTATMLRRALIAAS
HMAENDCTFLWLGPKDLQKSKIVEKQAKKAGAFTIGGARWTGGTLTNPIM
SNQAERFDYRIPDCVFILDTIRHLPALKEAKLCGIPTMGVADSDCDPELL
TYPIPGNDDAAHAIYLYCSLMRLAILDGRARGRRLNRPSVPIPSFPSSQK
RRGWGR*
back to top

spliced messenger RNA

>Gchil1543.t1 ID=Gchil1543.t1|Name=Gchil1543.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00004403_pilon:824971..825741- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTTCAACACTCCCTGAAGCTCGTGCGACAGTTTTCTTCCGCCGT
ATCCTCCGCCTCAGGTCCTCTTTCAGCGGCTGATTTGATGTCTTCGCCAA
AACTCGCTTCAAGCGCCAACTCAATTTTCCATCAATACAGTGTGAAGGAT
CTTATGGATGCCCGCGTCCATATGGGTCACAGAACGAAGCTTTGGAACCC
GAAAATGGCACCATATCTTCTTGGGCATCGTAACGGAATGCATGTAATAG
ATCTCGACAAAACTGCCACCATGCTCCGCCGTGCGCTGATCGCCGCGTCT
CATATGGCTGAGAACGACTGCACGTTTCTTTGGCTCGGACCGAAGGATTT
GCAAAAGAGCAAGATTGTAGAAAAGCAGGCAAAGAAGGCCGGTGCATTTA
CGATCGGCGGTGCTCGGTGGACGGGTGGTACTCTTACAAACCCGATCATG
TCAAATCAAGCAGAGAGATTCGATTATAGAATTCCAGACTGTGTATTCAT
CCTAGACACAATTAGGCATTTGCCGGCTCTGAAGGAAGCCAAGCTATGCG
GCATCCCTACAATGGGAGTTGCTGACTCAGACTGCGACCCGGAACTCCTT
ACTTACCCCATACCAGGAAATGACGACGCTGCTCATGCCATTTATTTGTA
CTGTAGTCTCATGAGACTTGCCATTCTGGACGGGAGAGCTCGCGGGAGAA
GGCTGAATCGTCCTTCCGTACCGATACCAAGCTTTCCATCGTCACAAAAA
AGGAGAGGCTGGGGGCGATAA
back to top

protein sequence of Gchil1543.t1

>Gchil1543.t1 ID=Gchil1543.t1|Name=Gchil1543.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=257bp
MAFQHSLKLVRQFSSAVSSASGPLSAADLMSSPKLASSANSIFHQYSVKD
LMDARVHMGHRTKLWNPKMAPYLLGHRNGMHVIDLDKTATMLRRALIAAS
HMAENDCTFLWLGPKDLQKSKIVEKQAKKAGAFTIGGARWTGGTLTNPIM
SNQAERFDYRIPDCVFILDTIRHLPALKEAKLCGIPTMGVADSDCDPELL
TYPIPGNDDAAHAIYLYCSLMRLAILDGRARGRRLNRPSVPIPSFPSSQK
RRGWGR*
back to top

mRNA from alignment at tig00004403_pilon:824971..825741-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1543.t1 ID=Gchil1543.t1|Name=Gchil1543.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00004403_pilon:824971..825741- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTTTCAACACTCCCTGAAGCTCGTGCGACAGTTTTCTTCCGCCGT
ATCCTCCGCCTCAGGTCCTCTTTCAGCGGCTGATTTGATGTCTTCGCCAA
AACTCGCTTCAAGCGCCAACTCAATTTTCCATCAATACAGTGTGAAGGAT
CTTATGGATGCCCGCGTCCATATGGGTCACAGAACGAAGCTTTGGAACCC
GAAAATGGCACCATATCTTCTTGGGCATCGTAACGGAATGCATGTAATAG
ATCTCGACAAAACTGCCACCATGCTCCGCCGTGCGCTGATCGCCGCGTCT
CATATGGCTGAGAACGACTGCACGTTTCTTTGGCTCGGACCGAAGGATTT
GCAAAAGAGCAAGATTGTAGAAAAGCAGGCAAAGAAGGCCGGTGCATTTA
CGATCGGCGGTGCTCGGTGGACGGGTGGTACTCTTACAAACCCGATCATG
TCAAATCAAGCAGAGAGATTCGATTATAGAATTCCAGACTGTGTATTCAT
CCTAGACACAATTAGGCATTTGCCGGCTCTGAAGGAAGCCAAGCTATGCG
GCATCCCTACAATGGGAGTTGCTGACTCAGACTGCGACCCGGAACTCCTT
ACTTACCCCATACCAGGAAATGACGACGCTGCTCATGCCATTTATTTGTA
CTGTAGTCTCATGAGACTTGCCATTCTGGACGGGAGAGCTCGCGGGAGAA
GGCTGAATCGTCCTTCCGTACCGATACCAAGCTTTCCATCGTCACAAAAA
AGGAGAGGCTGGGGGCGATAA
back to top

Coding sequence (CDS) from alignment at tig00004403_pilon:824971..825741-

>Gchil1543.t1 ID=Gchil1543.t1|Name=Gchil1543.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=771bp|location=Sequence derived from alignment at tig00004403_pilon:824971..825741- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTTTCAACACTCCCTGAAGCTCGTGCGACAGTTTTCTTCCGCCGT
ATCCTCCGCCTCAGGTCCTCTTTCAGCGGCTGATTTGATGTCTTCGCCAA
AACTCGCTTCAAGCGCCAACTCAATTTTCCATCAATACAGTGTGAAGGAT
CTTATGGATGCCCGCGTCCATATGGGTCACAGAACGAAGCTTTGGAACCC
GAAAATGGCACCATATCTTCTTGGGCATCGTAACGGAATGCATGTAATAG
ATCTCGACAAAACTGCCACCATGCTCCGCCGTGCGCTGATCGCCGCGTCT
CATATGGCTGAGAACGACTGCACGTTTCTTTGGCTCGGACCGAAGGATTT
GCAAAAGAGCAAGATTGTAGAAAAGCAGGCAAAGAAGGCCGGTGCATTTA
CGATCGGCGGTGCTCGGTGGACGGGTGGTACTCTTACAAACCCGATCATG
TCAAATCAAGCAGAGAGATTCGATTATAGAATTCCAGACTGTGTATTCAT
CCTAGACACAATTAGGCATTTGCCGGCTCTGAAGGAAGCCAAGCTATGCG
GCATCCCTACAATGGGAGTTGCTGACTCAGACTGCGACCCGGAACTCCTT
ACTTACCCCATACCAGGAAATGACGACGCTGCTCATGCCATTTATTTGTA
CTGTAGTCTCATGAGACTTGCCATTCTGGACGGGAGAGCTCGCGGGAGAA
GGCTGAATCGTCCTTCCGTACCGATACCAAGCTTTCCATCGTCACAAAAA
AGGAGAGGCTGGGGGCGATAA
back to top