Gchil1543.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil1543.t1
Unique NameGchil1543.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length257
Homology
BLAST of Gchil1543.t1 vs. uniprot
Match: A0A2V3IXS7_9FLOR (30S ribosomal protein S2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXS7_9FLOR)

HSP 1 Score: 405 bits (1042), Expect = 2.160e-141
Identity = 190/252 (75.40%), Postives = 227/252 (90.08%), Query Frame = 0
Query:    1 MAFQHSLKLVRQFSSAVSSASGPLSAADLMSSPKLASSANSIFHQYSVKDLMDARVHMGHRTKLWNPKMAPYLLGHRNGMHVIDLDKTATMLRRALIAASHMAENDCTFLWLGPKDLQKSKIVEKQAKKAGAFTIGGARWTGGTLTNPIMSNQAERFDYRIPDCVFILDTIRHLPALKEAKLCGIPTMGVADSDCDPELLTYPIPGNDDAAHAIYLYCSLMRLAILDGRARGRRLNRPSVPIPSFPSSQKRR 252
            MA ++S+  +R+F +++ S +  L  +DL+SSPK ++SANS FHQYSV+DLM+ARVHMGHRTKLWNPKMAPY+LGHRNGMH+++LD TATMLRRALIAASHMAENDCTFLWLGP+D QKSKIVEKQA+KAGA+TI GARW GGTLTNPI SNQA+RF+YRIPDCVF++DTIRH+PAL+EA+LCGIPT+G+ DSDCDP+ LTYPIPGNDDAA AIYLYCSLM+ A+LDGRARGRRL+RPSV IPS  S+Q+ R
Sbjct:    1 MATRNSISAIRRFCTSIRSHTTQLPDSDLLSSPKFSASANSTFHQYSVQDLMNARVHMGHRTKLWNPKMAPYILGHRNGMHILNLDVTATMLRRALIAASHMAENDCTFLWLGPRDPQKSKIVEKQARKAGAYTIDGARWIGGTLTNPIKSNQAQRFNYRIPDCVFVVDTIRHMPALREARLCGIPTIGIVDSDCDPQFLTYPIPGNDDAALAIYLYCSLMKHALLDGRARGRRLSRPSVQIPSLKSAQRAR 252          
BLAST of Gchil1543.t1 vs. uniprot
Match: A0A7J7IRC1_9RHOD (28S ribosomal protein S2, mitochondrial n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IRC1_9RHOD)

HSP 1 Score: 201 bits (511), Expect = 1.860e-61
Identity = 105/202 (51.98%), Postives = 129/202 (63.86%), Query Frame = 0
Query:   47 SVKDLMDARVHMGHRTKLWNPKMAPYLLGHRNGMHVIDLDKTATMLRRALIAASHMAENDCTFLWLGPKDLQKSKIVEKQAKKAGAFTIGGARWTGGTLTNPIMSNQAERFDYRIPDCVFILDTIRHLPALKEAKLCGIPTMGVADSDCDPELLTYPIPGNDDAAHAIYLYCSLMRLAILDGRARGRRLNRPSVPIPSFPSS 248
            +++ LM A VH GHRT +WNPKM  Y+ G RNGMHVIDL +TAT LRRAL             LWLGPKD     IV  +A++AGAFT+ G RW GGTLTNP+ S Q  R   ++PD +F +D  RH  ALKEA++  IPT+ V D+DCDP+  TY +PGND++A AI LYC+L   A LDG  R R  N P   I    SS
Sbjct:    7 TLRQLMAAGVHFGHRTTVWNPKMRSYVFGKRNGMHVIDLQQTATCLRRALEVFQAAGRAGLRQLWLGPKDPLLENIVRMRARQAGAFTLLG-RWVGGTLTNPVESRQIRRLGGQLPDLLFCVDAHRHRTALKEARIVDIPTIAVIDTDCDPDWATYIVPGNDESARAIDLYCALAVQATLDG-LRERAGNLPKDTIDPAKSS 206          
BLAST of Gchil1543.t1 vs. uniprot
Match: A0A7S1ETF3_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ETF3_9RHOD)

HSP 1 Score: 197 bits (500), Expect = 3.580e-59
Identity = 88/199 (44.22%), Postives = 136/199 (68.34%), Query Frame = 0
Query:   49 KDLMDARVHMGHRTKLWNPKMAPYLLGHRNGMHVIDLDKTATMLRRALIAASHMAENDCTFLWLGPKDLQKSKIVEKQAKKAG--AFTIGGARWTGGTLTNPIMSNQAERFDYRIPDCVFILDTIRHLPALKEAKLCGIPTMGVADSDCDPELLTYPIPGNDDAAHAIYLYCSLMRLAILDGRARGRRLNRPSVP-IPS 244
            + LM+ARVH+GH+T++W P+MAPY+LG RNGMH+I+LD+T  +L +AL  A  ++      LWLGPK+  + K++ + A+K     FT    +W  GTLTN   + + E FDY++PD +F+LD + +  A++EA   GIP +G+ D+DC+PE++TYPIPGND++  A++LY SLM  A+++G       +R  +P IP+
Sbjct:   18 RQLMNARVHLGHKTRIWEPRMAPYILGVRNGMHIINLDRTVVLLSQALRFARELSYRSGRILWLGPKEPIQHKVLAEIAQKTPHVLFTKEYKKWVAGTLTNAGKTEKLEEFDYKLPDALFVLDCLHNYTAIREANQVGIPVIGIVDTDCNPEIVTYPIPGNDESTRALHLYSSLMSQAMIEGSKMAHHASRGKIPKIPT 216          
BLAST of Gchil1543.t1 vs. uniprot
Match: M2VZG4_GALSU (30S ribosomal protein S2 (Plastid) isoform 1 n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VZG4_GALSU)

HSP 1 Score: 196 bits (499), Expect = 1.310e-58
Identity = 96/200 (48.00%), Postives = 136/200 (68.00%), Query Frame = 0
Query:   44 HQYSVKDLMDARVHMGHRTKLWNPKMAPYLLGHRNGMHVIDLDKTATMLRRALIAASHMAENDCTFLWLGPKDLQKSKIVEKQAKKAGAFTIGGARWTGGTLTNPIMSNQAERFDYRIPDCVFILDTIRHLPALKEAKLCGIPTMGVADSDCDPELLTYPIPGNDDAAHAIYLYCSLMRLAILDGRA--RGRRLNRPSVP 241
            + ++++ LM  RVHMGH T+ WNPKM  Y+LG RNG+H+I+L+ T T LRRAL     M   D   LWL PK  + + +  K A++  AF + G RW  GTLTNP+ S QA++F Y++PD +F LD   H  ALKEA++ G+P++G+ D+DCDP  +TYPIPGND++A AI LYC L+  A+ +GR+  +GR   +P+ P
Sbjct:   71 YAFTLEQLMQCRVHMGHVTEKWNPKMGRYILGERNGIHIINLEYTWTHLRRALRVIREMVALDGFVLWLPPKRNELASVARKIAEQGEAFMLDG-RWIPGTLTNPLGSGQAKKFRYKLPDMLFCLDCRFHTVALKEAQMTGVPSVGIVDTDCDPGQVTYPIPGNDESALAISLYCQLVVHAVGEGRSLSKGRMEIKPNRP 269          
BLAST of Gchil1543.t1 vs. uniprot
Match: M1UXR0_CYAM1 (Mitochondrial ribosomal protein S2, mitochondrial n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1UXR0_CYAM1)

HSP 1 Score: 194 bits (493), Expect = 1.720e-58
Identity = 91/184 (49.46%), Postives = 122/184 (66.30%), Query Frame = 0
Query:   45 QYSVKDLMDARVHMGHRTKLWNPKMAPYLLGHRNGMHVIDLDKTATMLRRALIAASHMAENDCTFLWLGPKDLQKSKIVEKQAKKAGAFTIGGARWTGGTLTNPIMSNQAERFDYRIPDCVFILDTIRHLPALKEAKLCGIPTMGVADSDCDPELLTYPIPGNDDAAHAIYLYCSLMRLAILDG 228
            Q +++ L+ A VH+GH+T  WNPKM PY+ G RNGMH++DL ++A  L+RAL             LWLGPKD     IV  +A++AGAFT+ G RW GGTLTNP+ S Q  R    +PD +F +D  RH  AL+EA++  IP++ V D+DCDP+  TY +PGND++A AI LYC+L   A LDG
Sbjct:    5 QATLRQLLSAGVHIGHKTSAWNPKMRPYIYGERNGMHIVDLQQSAVCLKRALEVFRAAGRAGLRQLWLGPKDPFLESIVRTRARQAGAFTLSG-RWVGGTLTNPVASRQILRLGGHLPDLIFCVDAHRHRTALREARIVDIPSIAVIDTDCDPDWATYIVPGNDESARAIDLYCALAVQATLDG 187          
BLAST of Gchil1543.t1 vs. uniprot
Match: A0A5J4Z1M7_PORPP (30S ribosomal protein S2 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z1M7_PORPP)

HSP 1 Score: 164 bits (416), Expect = 5.090e-45
Identity = 78/203 (38.42%), Postives = 122/203 (60.10%), Query Frame = 0
Query:   48 VKDLMDARVHMGHRTKLWNPKMAPYLLGHRNGMHVIDLDKTATMLRRALIAASHMAENDCTFLWLGPKD-LQKSKIVEKQAKKAGA-FTIGGARWTGGTLTNPIMSNQAERFDYRIPDCVFILDTIRHLPALKEAKLCGIPTMGVADSDCDPELLTYPIPGNDDAAHAIYLYCSLMRLAILDGRARGRRLNRPSVPIPSFPSS 248
            ++  MDARVH+GH+T++WNP+MAP++LG RNGMH+I+LDKT  ++  AL  A  +  +     WLGP++  Q   +V    +  GA F     RW GG  TN       +RF  ++PD +F++D  ++  A+ EA +  +  + V D+DCDP+ + YPIPGND+++ A++LY S+M  A+ +G    R+  +   P     SS
Sbjct:   10 LRRFMDARVHLGHKTRVWNPRMAPFILGVRNGMHIINLDKTVVLMADALRFARELTASGGRIYWLGPREETQHDMLVSIAERTPGAIFQRKSKRWIGGMFTNAAQMGTLQRFGNKLPDALFVMDARKNRVAIAEANVMSMQVIAVLDTDCDPKEVQYPIPGNDESSLALHLYMSMMSHAMTEGHLLYRKTKQSRTPRAVASSS 212          
BLAST of Gchil1543.t1 vs. uniprot
Match: A0A1Z5L628_ORNMO (Selenoprotein W2b (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5L628_ORNMO)

HSP 1 Score: 158 bits (400), Expect = 5.600e-44
Identity = 85/193 (44.04%), Postives = 119/193 (61.66%), Query Frame = 0
Query:   47 SVKDLMDARVHMGHRTKLWNPKMAPYLLGHRNGMHVIDLDKTATMLRRALIAASHMAENDCTFLWLGPKDLQKSKIVEKQAKKAGAFTIGGARWTGGTLTNPIMSNQAERFDYRIPDCVFILDTI-----RHLPALKEAKLCGIPTMGVADSDCDPELLTYPIPGNDDAAHAIYLYCSLMRLAILDGRARGRR 234
            +VKDL DARVH+GH+  L N  M PY+ G R G H+IDLD+T   L RAL A +H+A  D   L++  ++LQ S  +E  AK+   F      W GG LTN   S +    + R+PDC+ +L T+     +HL  ++ +K+  IPT+G+ D++CDP L+TYPIPGNDD   AI LYC L +  IL  +AR ++
Sbjct:   69 TVKDLFDARVHLGHKEGLLNVHMTPYIFGSRLGCHIIDLDQTLLHLHRALNAVAHIAYRDGIILFVS-RNLQMSHFIESTAKECKEFAHARF-WQGGLLTN---STRQFGTETRLPDCIILLSTLDTVFEQHLAVVESSKML-IPTVGIVDTNCDPTLITYPIPGNDDTPSAIQLYCRLFKETILRAKARRKQ 255          
BLAST of Gchil1543.t1 vs. uniprot
Match: UPI001AE550F6 (30S ribosomal protein S2 n=2 Tax=Aurantimonadaceae TaxID=255475 RepID=UPI001AE550F6)

HSP 1 Score: 157 bits (398), Expect = 1.180e-43
Identity = 88/225 (39.11%), Postives = 123/225 (54.67%), Query Frame = 0
Query:   46 YSVKDLMDARVHMGHRTKLWNPKMAPYLLGHRNGMHVIDLDKTATMLRRALIAASHMAENDCTFLWLGPKDLQKSKIVEKQAKKAGAFTIGGARWTGGTLTN---------------PIMSNQAERFDYR------------------------IPDCVFILDTIRHLPALKEAKLCGIPTMGVADSDCDPELLTYPIPGNDDAAHAIYLYCSLMRLAILDGRAR 231
            YS++ L++A VH GH+T  WNPKMAPY+ G RN +H++DL +T  ML RAL A S         L++G K  Q S+IV   A ++  + +  ARW GG LTN                +++  A+ F  +                        +PD +FI+DT +   A++EAK  GIP + V DS+C+P+ + YPIPGNDDAA AI LYC L+  A +DG AR
Sbjct:    6 YSMRQLLEAGVHFGHQTHRWNPKMAPYIFGARNNIHILDLAQTVPMLHRALQAVSDSVARGGRVLFVGTKR-QASEIVADAANRSAQYYVN-ARWLGGMLTNWKTISNSIQRLRKLDELLAGDAQGFTKKERLTLQRERDKLDRALGGIKDMGGVPDMIFIIDTNKESIAIEEAKRLGIPVVAVVDSNCNPDPIDYPIPGNDDAARAISLYCDLIARAAVDGIAR 228          
BLAST of Gchil1543.t1 vs. uniprot
Match: A0A0D5LSB9_9HYPH (30S ribosomal protein S2 n=13 Tax=Hyphomicrobiales TaxID=356 RepID=A0A0D5LSB9_9HYPH)

HSP 1 Score: 157 bits (397), Expect = 1.700e-43
Identity = 86/225 (38.22%), Postives = 125/225 (55.56%), Query Frame = 0
Query:   46 YSVKDLMDARVHMGHRTKLWNPKMAPYLLGHRNGMHVIDLDKTATMLRRALIAASHMAENDCTFLWLGPKDLQKSKIVEKQAKKAGAFTIGGARWTGGTLTN---------------PIMSNQAERFDYR------------------------IPDCVFILDTIRHLPALKEAKLCGIPTMGVADSDCDPELLTYPIPGNDDAAHAIYLYCSLMRLAILDGRAR 231
            ++++ L++A VH GH+T  WNPKM PY+ G RN +H+IDL +T  ML RAL   S     +   L +G K  Q S+IV + A+++  + +  +RW GG LTN                I++N+A+ F  +                        +PD +FI+DT +   A++EAK  GIP + V DS+CDP+ + YPIPGNDDA+ AI LYC L+  A +DG AR
Sbjct:    6 FTMRQLLEAGVHFGHQTHRWNPKMKPYIFGDRNNIHIIDLAQTVPMLSRALQVVSDTVARNGRVLMVGTKR-QASEIVAESAQRSAQYYVN-SRWLGGMLTNWRTISNSIQRLRKLDEILANEAQGFTKKERLNLDREREKLDRALGGIRDMGGVPDLIFIIDTNKEKIAIEEAKRLGIPVVAVVDSNCDPDEVDYPIPGNDDASRAISLYCDLISRAAIDGIAR 228          
BLAST of Gchil1543.t1 vs. uniprot
Match: J0QS03_9HYPH (30S ribosomal protein S2 n=1 Tax=Bartonella tamiae Th239 TaxID=1094558 RepID=J0QS03_9HYPH)

HSP 1 Score: 156 bits (394), Expect = 4.290e-43
Identity = 87/225 (38.67%), Postives = 123/225 (54.67%), Query Frame = 0
Query:   46 YSVKDLMDARVHMGHRTKLWNPKMAPYLLGHRNGMHVIDLDKTATMLRRALIAASHMAENDCTFLWLGPKDLQKSKIVEKQAKKAGAFTIGGARWTGGTLTN---------------PIMSNQAERFDYR------------------------IPDCVFILDTIRHLPALKEAKLCGIPTMGVADSDCDPELLTYPIPGNDDAAHAIYLYCSLMRLAILDGRAR 231
            +S++ L++A VH GH+T  WNPKMAPY+ G RN +H+IDL +T  +L +AL   S         L++G K  Q S+IV   A ++  + +  ARW GG LTN                I+S++A  F  +                        IPD +F++DT +   A++EAK  GIP + V D++CDP+ + YPIPGNDDA+ AI LYC L+  A LDG AR
Sbjct:    6 FSMRQLLEAGVHFGHQTHRWNPKMAPYIYGQRNNIHIIDLAQTVPLLHQALKVVSDTVARGGRVLFVGTKR-QASEIVADSANRSAQYYVN-ARWLGGMLTNWKTISNSIQRLRKVDEILSDEAAGFTKKERLNLDREREKLDRALGGIKDMGSIPDLIFVIDTNKEAIAIQEAKRLGIPVVAVIDTNCDPDNIDYPIPGNDDASRAISLYCDLIARAALDGIAR 228          
The following BLAST results are available for this feature:
BLAST of Gchil1543.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IXS7_9FLOR2.160e-14175.4030S ribosomal protein S2 n=1 Tax=Gracilariopsis ch... [more]
A0A7J7IRC1_9RHOD1.860e-6151.9828S ribosomal protein S2, mitochondrial n=1 Tax=Cy... [more]
A0A7S1ETF3_9RHOD3.580e-5944.22Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
M2VZG4_GALSU1.310e-5848.0030S ribosomal protein S2 (Plastid) isoform 1 n=2 T... [more]
M1UXR0_CYAM11.720e-5849.46Mitochondrial ribosomal protein S2, mitochondrial ... [more]
A0A5J4Z1M7_PORPP5.090e-4538.4230S ribosomal protein S2 n=1 Tax=Porphyridium purp... [more]
A0A1Z5L628_ORNMO5.600e-4444.04Selenoprotein W2b (Fragment) n=1 Tax=Ornithodoros ... [more]
UPI001AE550F61.180e-4339.1130S ribosomal protein S2 n=2 Tax=Aurantimonadaceae... [more]
A0A0D5LSB9_9HYPH1.700e-4338.2230S ribosomal protein S2 n=13 Tax=Hyphomicrobiales... [more]
J0QS03_9HYPH4.290e-4338.6730S ribosomal protein S2 n=1 Tax=Bartonella tamiae... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001865Ribosomal protein S2PRINTSPR00395RIBOSOMALS2coord: 48..66
score: 35.63
coord: 162..179
score: 32.31
coord: 79..88
score: 50.31
coord: 179..190
score: 38.72
coord: 131..148
score: 36.41
coord: 200..214
score: 44.1
IPR001865Ribosomal protein S2PFAMPF00318Ribosomal_S2coord: 160..228
e-value: 5.9E-21
score: 74.7
coord: 51..147
e-value: 3.4E-29
score: 101.7
IPR001865Ribosomal protein S2CDDcd01425RPS2coord: 51..226
e-value: 9.98556E-69
score: 208.59
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidTIGRFAMTIGR01011TIGR01011coord: 47..147
e-value: 1.6E-26
score: 91.0
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidPANTHERPTHR1253430S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLARcoord: 44..228
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidHAMAPMF_00291_BRibosomal_S2_Bcoord: 44..229
score: 19.446985
NoneNo IPR availableGENE3D3.40.50.10490coord: 49..247
e-value: 2.4E-58
score: 198.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 237..256
IPR018130Ribosomal protein S2, conserved sitePROSITEPS00962RIBOSOMAL_S2_1coord: 48..59
IPR023591Ribosomal protein S2, flavodoxin-like domain superfamilySUPERFAMILY52313Ribosomal protein S2coord: 48..231

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:824971..825741 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1543.t1Gchil1543.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004403_pilon 824971..825741 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil1543.t1 ID=Gchil1543.t1|Name=Gchil1543.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=257bp
MAFQHSLKLVRQFSSAVSSASGPLSAADLMSSPKLASSANSIFHQYSVKD
LMDARVHMGHRTKLWNPKMAPYLLGHRNGMHVIDLDKTATMLRRALIAAS
HMAENDCTFLWLGPKDLQKSKIVEKQAKKAGAFTIGGARWTGGTLTNPIM
SNQAERFDYRIPDCVFILDTIRHLPALKEAKLCGIPTMGVADSDCDPELL
TYPIPGNDDAAHAIYLYCSLMRLAILDGRARGRRLNRPSVPIPSFPSSQK
RRGWGR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001865Ribosomal_S2
IPR005706Ribosomal_S2_bac/mit/plastid
IPR018130Ribosomal_S2_CS
IPR023591Ribosomal_S2_flav_dom_sf