Gchil1503.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1503.t1
Unique NameGchil1503.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length166
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:418046..419282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7260.FBpp0254910
PFAMsChromo
Max annot lvl33208|Metazoa
Evalue0.000296
EggNOG OGsKOG1911@1|root,KOG1911@2759|Eukaryota,3A4DJ@33154|Opisthokonta,3BRD1@33208|Metazoa,3D884@33213|Bilateria,41ZRX@6656|Arthropoda,3SN0B@50557|Insecta,453FP@7147|Diptera,45ZJY@7214|Drosophilidae
DescriptionChromatin organization modifier domain
COG categoryB
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1503Gchil1503Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 418046..419282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1503.t1Gchil1503.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 418046..419282 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1503.t1.start1Gchil1503.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 418046..418048 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1503.t1.CDS1Gchil1503.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 418046..418152 +
Gchil1503.t1.CDS2Gchil1503.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 418892..419282 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1503.t1.exon1Gchil1503.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 418046..418152 +
Gchil1503.t1.exon2Gchil1503.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 418892..419282 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1503.t1.intron1Gchil1503.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 418153..418891 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1503.t1.stop1Gchil1503.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 419280..419282 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1503.t1 ID=Gchil1503.t1|Name=Gchil1503.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=166bp
MRGTQNRSQKRLKLLPLEFVAIDIVGPFPKSVTGHDTVTIDVDEIHDTVS
IDRVSRVPVRTEPAPVTTERARTVTFDTDDPFAEEAVTDTTSSSAGNNHR
TEPSQPDSANTTQPDSIGIVEQMLDHGLADDPPQGLVYRVRWYGCNAAED
SWEAPNNLPQHFISQ*
back to top

spliced messenger RNA

>Gchil1503.t1 ID=Gchil1503.t1|Name=Gchil1503.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=498bp|location=Sequence derived from alignment at tig00004403_pilon:418046..419282+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgcgcggcacacaaaaccgttcacagaagcggcttaagctcttgccact
tgagttcgtggcaattgacattgtcggtccatttccgaagtcagtcactg
gacatgacacagtcacgattgatgttgacgagattcacgataccgtcagc
atcgaccgcgtcagtcgcgtccctgttcggacagaaccggccccggtcac
cacagaacgcgcccgcacggtaacttttgatacggacgacccgttcgccg
aggaagccgtgacggacactacctcgtcctccgctggaaataatcaccga
acggagccttcacaacccgactcggccaacactacccaaccggacagcat
tggaattgtcgagcaaatgcttgaccatggtctggccgacgaccctccgc
aaggccttgtttatcgcgtacgctggtacggttgcaatgccgcggaagac
tcttgggaagctccgaacaatcttccgcaacactttattagccaataa
back to top

protein sequence of Gchil1503.t1

>Gchil1503.t1 ID=Gchil1503.t1|Name=Gchil1503.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=166bp
MRGTQNRSQKRLKLLPLEFVAIDIVGPFPKSVTGHDTVTIDVDEIHDTVS
IDRVSRVPVRTEPAPVTTERARTVTFDTDDPFAEEAVTDTTSSSAGNNHR
TEPSQPDSANTTQPDSIGIVEQMLDHGLADDPPQGLVYRVRWYGCNAAED
SWEAPNNLPQHFISQ*
back to top

mRNA from alignment at tig00004403_pilon:418046..419282+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1503.t1 ID=Gchil1503.t1|Name=Gchil1503.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1237bp|location=Sequence derived from alignment at tig00004403_pilon:418046..419282+ (Gracilaria chilensis NLEC103_M9 male)
atgcgcggcacacaaaaccgttcacagaagcggcttaagctcttgccact
tgagttcgtggcaattgacattgtcggtccatttccgaagtcagtcactg
gacatgagtacatcctcggcatcaccgaccggttcacaaagctctgcaga
gcagttccgctacggtccacaatcgccccggggttgcccggacgttccta
gagaattgggcttacccgtacggaattcccaactacttgctcaccgataa
ccgacctcagtttgtctcgaagttcttcgaggaaatttgccgggcgtttg
gcacgaaacacgtcacgacaacggcgtaccacccgcagaccaatggtcaa
gccgaacggtttagtaggacgctggttcagcggctaaggcactacgttgc
ggatcaccagtctaactggcacgcgtacgtgcaaccacttacgtacggtt
acaatctacagattcactgaagtacgggcacaacgccgttcgaccttact
cttacccgagtacctccaaacgtggtgctcgacgagcctagttccgctac
agatgctgccacaccggcccaacctacgccggggcagatgaagcgttaca
cattgcggctgcttaaggcaacgcttcaatccgcacggaatcggctgatg
aacgcacagcgccgttacaaggaggactttgataagccgtgcggaagttg
gagtcatttgcggccggggatgaggttttcctcgaccgttctacgacaac
gccgaccggtggcgtgctcgaagagcacaaacgtacctcgcgcaaactgt
taccgaggacggcggggaactacaaagccatctccgcgacggacagcaca
gtcacgattgatgttgacgagattcacgataccgtcagcatcgaccgcgt
cagtcgcgtccctgttcggacagaaccggccccggtcaccacagaacgcg
cccgcacggtaacttttgatacggacgacccgttcgccgaggaagccgtg
acggacactacctcgtcctccgctggaaataatcaccgaacggagccttc
acaacccgactcggccaacactacccaaccggacagcattggaattgtcg
agcaaatgcttgaccatggtctggccgacgaccctccgcaaggccttgtt
tatcgcgtacgctggtacggttgcaatgccgcggaagactcttgggaagc
tccgaacaatcttccgcaacactttattagccaataa
back to top

Coding sequence (CDS) from alignment at tig00004403_pilon:418046..419282+

>Gchil1503.t1 ID=Gchil1503.t1|Name=Gchil1503.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=498bp|location=Sequence derived from alignment at tig00004403_pilon:418046..419282+ (Gracilaria chilensis NLEC103_M9 male)
atgcgcggcacacaaaaccgttcacagaagcggcttaagctcttgccact
tgagttcgtggcaattgacattgtcggtccatttccgaagtcagtcactg
gacatgacacagtcacgattgatgttgacgagattcacgataccgtcagc
atcgaccgcgtcagtcgcgtccctgttcggacagaaccggccccggtcac
cacagaacgcgcccgcacggtaacttttgatacggacgacccgttcgccg
aggaagccgtgacggacactacctcgtcctccgctggaaataatcaccga
acggagccttcacaacccgactcggccaacactacccaaccggacagcat
tggaattgtcgagcaaatgcttgaccatggtctggccgacgaccctccgc
aaggccttgtttatcgcgtacgctggtacggttgcaatgccgcggaagac
tcttgggaagctccgaacaatcttccgcaacactttattagccaataa
back to top