Gchil10998.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10998.t1
Unique Name	Gchil10998.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	649

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000021_pilon	contig	tig00000021_pilon:150328..152274 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10998	Gchil10998	Gracilaria chilensis NLEC103_M9 male	gene	tig00000021_pilon 150328..152274 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10998.t1.start1	Gchil10998.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000021_pilon 150328..150330 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10998.t1.CDS1	Gchil10998.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000021_pilon 150328..152274 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10998.t1.exon1	Gchil10998.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000021_pilon 150328..152274 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10998.t1.stop1	Gchil10998.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000021_pilon 152272..152274 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10998.t1	Gchil10998.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000021_pilon 150328..152274 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000021_pilon:150328..152274+
coding sequence from alignment at tig00000021_pilon:150328..152274+

mRNA sequence

>Gchil10998.t1 ID=Gchil10998.t1|Name=Gchil10998.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=649bp
MQLARDLAPDPEPNADAAAPPRTPQPKWSYPQGSPQQFAQGESNPWAVWN
DASARAQREQLQPRDPKAETDFWRGAARDLAAADADADADADTDSPNSPP
SRAEHGANANAKENGNEEESALKDGSSADVWRMAREVTGEMVDMQSRLRG
QLEQYDSVQNVDEYRQIARELLGPPPEVGDDSRPVRRSADFQEGAAEAEQ
LWDPDVDWMQFDHVQRELRNINNSDDRHNGSEEEPKPAASEDYMQQQRSF
DGTDNQQLEEQAWDTATFTDQSTAPAFSDTNSMPGFIRNRFMRSGTYGAS
WAGAEREAEHLRRDGVPLRDPKADAEQWRSVARELDLDVGDDLLAVDEQS
TGAGDAAASGDSDATIAEGRADGTASWASWGSGSASWTSANAVAKERDPK
KEVDMWRSSARELTGAEAAPAADQADEPSSSSWASWRNASASWELANETA
EARDPKKEVDMWRSSARELTSPDSPDATVSGNSGDTEGQASAWDSWRNAN
ERWMHSLDDGGMKTEAADNWSPVADTQSDWGANLGGKTSSERSAWQAWEN
AVERPNASVQQEWWKMRTDAVQRPEPKATDRSSEGIDQWRAAAKEVSLEG
FKEQAGGSAEDVNESKTSRLANDSSINAWKSVARDLTTEPLTEDEDGS*

spliced messenger RNA

>Gchil10998.t1 ID=Gchil10998.t1|Name=Gchil10998.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1947bp|location=Sequence derived from alignment at tig00000021_pilon:150328..152274+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACTCGCGCGAGATCTCGCCCccgacccggaacccaacgctgacgc
cgccgccccgccgcgcacgccgcagccAAAGTGGTCCTATCCGCAGGGTA
GTCCGCAGCAGTTTGCCCAGGGAGAATCCAACCCGTGGGCGGTGTGGAAC
GATGCCTCTGCCCGTGCTCAACGAGAACAATTGCAGCCGCGCGACCCAAA
GGCGGAGACTGACTTTTGGCGTGGTGCCGCCCGCGACCTAgccgccgccg
acgccgacgccgacgccgacgccgaTACCGACTCGCCGAATTCGCCTCCA
TCGCGCGCCGAGCACGGTGCCAACGCGAACGCAAAGGAAAACGGAAATGA
GGAGGAGAGCGCATTGAAGGACGGTTCATCGGCCGACGTGTGGAGAATGG
CGAGAGAGGTGACCGGCGAGATGGTCGACATGCAGTCCAGGCTGCGAGGC
CAGTTGGAGCAATACGACTCTGTGCAAAACGTCGATGAGTATCGCCAAAT
TGCGCGCGAGCTGCTTGGACCGCCACCGGAAGTGGGTGACGATTCGCGCC
CGGTTCGACGCAGTGCCGACTTCCAGGAAGGCGCCGCCGAGGCGGAGCAA
CTCTGGGACCCGGACGTGGACTGGATGCAGTTCGACCACGTCCAACGCGA
ATTGAGGAATATCAACAACAGCGACGACCGCCACAATGGAAGTGAAGAAG
AGCCGAAACCAGCGGCCAGTGAAGACTACATGCAGCAGCAGAGATCCTTT
GATGGTACAGACAACCAGCAGCTTGAGGAACAAGCTTGGGATACGGCTAC
GTTCACGGATCAGTCAACTGCACCGGCATTTTCAGACACCAACTCCATGC
CGGGCTTCATACGCAACCGCTTCATGCGCAGCGGCACCTATGGCGCCAGT
TGGGCCGGAGCCGAACGCGAGGCAGAGCACTTGAGGCGGGACGGGGTTCC
GCTCAGAGATCCAAAGGCTGATGCTGAGCAGTGGCGCTCCGTGGCACGGG
AACTCGACCTGGACGTGGGTGATGATCTCCTTGCCGTCGATGAGCAGAGC
ACCGGCGCTGGCGACGCTGCGGCGTCGGGCGACAGCGATGCAACCATTGC
GGAGGGGCGCGCAGACGGCACCGCTTCTTGGGCGAGTTGGGGAAGCGGCA
GCGCATCGTGGACCAGTGCGAACGCAGTTGCAAAGGAGAGGGATCCAAAG
AAGGAAGTCGATATGTGGCGATCCAGTGCGCGCGAACTTACTGGCGCCGA
AGCTGCACCTGCTGCTGACCAGGCTGACGAGCCGTCTTCGTCGTCATGGG
CAAGTTGGCGGAACGCAAGTGCGTCATGGGAACTTGCCAACGAAACCGCA
GAAGCAAGAGACCCGAAGAAAGAGGTTGACATGTGGCGCTCTAGTGCTCG
CGAACTTACCTCTCCGGATTCGCCGGACGCGACCGTGTCAGGCAACTCTG
GCGACACGGAGGGACAGGCCAGCGCATGGGACTCGTGGCGAAATGCTAAT
GAACGTTGGATGCATTCTTTAGATGATGGGGGTATGAAGACGGAAGCGGC
GGATAATTGGTCGCCCGTAGCGGATACTCAGTCAGACTGGGGCGCTAATC
TAGGAGGTAAGACGTCGTCGGAGCGTTCGGCCTGGCAAGCTTGGGAAAAC
GCCGTTGAGCGACCGAATGCCTCTGTGCAACAGGAGTGGTGGAAAATGCG
AACAGATGCGGTGCAGCGGCCTGAACCAAAGGCGACCGACAGGTCTTCGG
AAGGTATCGATCAGTGGCGCGCAGCCGCAAAGGAAGTGTCCTTGGAAGGC
TTCAAAGAACAGGCCGGAGGATCAGCGGAGGATGTTAACGAGTCGAAGAC
ATCGCGTTTGGCCAATGATTCTTCCATCAACGCATGGAAGTCTGTAGCGA
GGGACCTCACGACCGAACCACTGACAGAAGATGAAGATGGGTCGTGA

protein sequence of Gchil10998.t1

>Gchil10998.t1 ID=Gchil10998.t1|Name=Gchil10998.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=649bp
MQLARDLAPDPEPNADAAAPPRTPQPKWSYPQGSPQQFAQGESNPWAVWN
DASARAQREQLQPRDPKAETDFWRGAARDLAAADADADADADTDSPNSPP
SRAEHGANANAKENGNEEESALKDGSSADVWRMAREVTGEMVDMQSRLRG
QLEQYDSVQNVDEYRQIARELLGPPPEVGDDSRPVRRSADFQEGAAEAEQ
LWDPDVDWMQFDHVQRELRNINNSDDRHNGSEEEPKPAASEDYMQQQRSF
DGTDNQQLEEQAWDTATFTDQSTAPAFSDTNSMPGFIRNRFMRSGTYGAS
WAGAEREAEHLRRDGVPLRDPKADAEQWRSVARELDLDVGDDLLAVDEQS
TGAGDAAASGDSDATIAEGRADGTASWASWGSGSASWTSANAVAKERDPK
KEVDMWRSSARELTGAEAAPAADQADEPSSSSWASWRNASASWELANETA
EARDPKKEVDMWRSSARELTSPDSPDATVSGNSGDTEGQASAWDSWRNAN
ERWMHSLDDGGMKTEAADNWSPVADTQSDWGANLGGKTSSERSAWQAWEN
AVERPNASVQQEWWKMRTDAVQRPEPKATDRSSEGIDQWRAAAKEVSLEG
FKEQAGGSAEDVNESKTSRLANDSSINAWKSVARDLTTEPLTEDEDGS*

mRNA from alignment at tig00000021_pilon:150328..152274+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10998.t1 ID=Gchil10998.t1|Name=Gchil10998.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1947bp|location=Sequence derived from alignment at tig00000021_pilon:150328..152274+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAACTCGCGCGAGATCTCGCCCccgacccggaacccaacgctgacgc
cgccgccccgccgcgcacgccgcagccAAAGTGGTCCTATCCGCAGGGTA
GTCCGCAGCAGTTTGCCCAGGGAGAATCCAACCCGTGGGCGGTGTGGAAC
GATGCCTCTGCCCGTGCTCAACGAGAACAATTGCAGCCGCGCGACCCAAA
GGCGGAGACTGACTTTTGGCGTGGTGCCGCCCGCGACCTAgccgccgccg
acgccgacgccgacgccgacgccgaTACCGACTCGCCGAATTCGCCTCCA
TCGCGCGCCGAGCACGGTGCCAACGCGAACGCAAAGGAAAACGGAAATGA
GGAGGAGAGCGCATTGAAGGACGGTTCATCGGCCGACGTGTGGAGAATGG
CGAGAGAGGTGACCGGCGAGATGGTCGACATGCAGTCCAGGCTGCGAGGC
CAGTTGGAGCAATACGACTCTGTGCAAAACGTCGATGAGTATCGCCAAAT
TGCGCGCGAGCTGCTTGGACCGCCACCGGAAGTGGGTGACGATTCGCGCC
CGGTTCGACGCAGTGCCGACTTCCAGGAAGGCGCCGCCGAGGCGGAGCAA
CTCTGGGACCCGGACGTGGACTGGATGCAGTTCGACCACGTCCAACGCGA
ATTGAGGAATATCAACAACAGCGACGACCGCCACAATGGAAGTGAAGAAG
AGCCGAAACCAGCGGCCAGTGAAGACTACATGCAGCAGCAGAGATCCTTT
GATGGTACAGACAACCAGCAGCTTGAGGAACAAGCTTGGGATACGGCTAC
GTTCACGGATCAGTCAACTGCACCGGCATTTTCAGACACCAACTCCATGC
CGGGCTTCATACGCAACCGCTTCATGCGCAGCGGCACCTATGGCGCCAGT
TGGGCCGGAGCCGAACGCGAGGCAGAGCACTTGAGGCGGGACGGGGTTCC
GCTCAGAGATCCAAAGGCTGATGCTGAGCAGTGGCGCTCCGTGGCACGGG
AACTCGACCTGGACGTGGGTGATGATCTCCTTGCCGTCGATGAGCAGAGC
ACCGGCGCTGGCGACGCTGCGGCGTCGGGCGACAGCGATGCAACCATTGC
GGAGGGGCGCGCAGACGGCACCGCTTCTTGGGCGAGTTGGGGAAGCGGCA
GCGCATCGTGGACCAGTGCGAACGCAGTTGCAAAGGAGAGGGATCCAAAG
AAGGAAGTCGATATGTGGCGATCCAGTGCGCGCGAACTTACTGGCGCCGA
AGCTGCACCTGCTGCTGACCAGGCTGACGAGCCGTCTTCGTCGTCATGGG
CAAGTTGGCGGAACGCAAGTGCGTCATGGGAACTTGCCAACGAAACCGCA
GAAGCAAGAGACCCGAAGAAAGAGGTTGACATGTGGCGCTCTAGTGCTCG
CGAACTTACCTCTCCGGATTCGCCGGACGCGACCGTGTCAGGCAACTCTG
GCGACACGGAGGGACAGGCCAGCGCATGGGACTCGTGGCGAAATGCTAAT
GAACGTTGGATGCATTCTTTAGATGATGGGGGTATGAAGACGGAAGCGGC
GGATAATTGGTCGCCCGTAGCGGATACTCAGTCAGACTGGGGCGCTAATC
TAGGAGGTAAGACGTCGTCGGAGCGTTCGGCCTGGCAAGCTTGGGAAAAC
GCCGTTGAGCGACCGAATGCCTCTGTGCAACAGGAGTGGTGGAAAATGCG
AACAGATGCGGTGCAGCGGCCTGAACCAAAGGCGACCGACAGGTCTTCGG
AAGGTATCGATCAGTGGCGCGCAGCCGCAAAGGAAGTGTCCTTGGAAGGC
TTCAAAGAACAGGCCGGAGGATCAGCGGAGGATGTTAACGAGTCGAAGAC
ATCGCGTTTGGCCAATGATTCTTCCATCAACGCATGGAAGTCTGTAGCGA
GGGACCTCACGACCGAACCACTGACAGAAGATGAAGATGGGTCGTGA

Coding sequence (CDS) from alignment at tig00000021_pilon:150328..152274+

>Gchil10998.t1 ID=Gchil10998.t1|Name=Gchil10998.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1947bp|location=Sequence derived from alignment at tig00000021_pilon:150328..152274+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAACTCGCGCGAGATCTCGCCCccgacccggaacccaacgctgacgc
cgccgccccgccgcgcacgccgcagccAAAGTGGTCCTATCCGCAGGGTA
GTCCGCAGCAGTTTGCCCAGGGAGAATCCAACCCGTGGGCGGTGTGGAAC
GATGCCTCTGCCCGTGCTCAACGAGAACAATTGCAGCCGCGCGACCCAAA
GGCGGAGACTGACTTTTGGCGTGGTGCCGCCCGCGACCTAgccgccgccg
acgccgacgccgacgccgacgccgaTACCGACTCGCCGAATTCGCCTCCA
TCGCGCGCCGAGCACGGTGCCAACGCGAACGCAAAGGAAAACGGAAATGA
GGAGGAGAGCGCATTGAAGGACGGTTCATCGGCCGACGTGTGGAGAATGG
CGAGAGAGGTGACCGGCGAGATGGTCGACATGCAGTCCAGGCTGCGAGGC
CAGTTGGAGCAATACGACTCTGTGCAAAACGTCGATGAGTATCGCCAAAT
TGCGCGCGAGCTGCTTGGACCGCCACCGGAAGTGGGTGACGATTCGCGCC
CGGTTCGACGCAGTGCCGACTTCCAGGAAGGCGCCGCCGAGGCGGAGCAA
CTCTGGGACCCGGACGTGGACTGGATGCAGTTCGACCACGTCCAACGCGA
ATTGAGGAATATCAACAACAGCGACGACCGCCACAATGGAAGTGAAGAAG
AGCCGAAACCAGCGGCCAGTGAAGACTACATGCAGCAGCAGAGATCCTTT
GATGGTACAGACAACCAGCAGCTTGAGGAACAAGCTTGGGATACGGCTAC
GTTCACGGATCAGTCAACTGCACCGGCATTTTCAGACACCAACTCCATGC
CGGGCTTCATACGCAACCGCTTCATGCGCAGCGGCACCTATGGCGCCAGT
TGGGCCGGAGCCGAACGCGAGGCAGAGCACTTGAGGCGGGACGGGGTTCC
GCTCAGAGATCCAAAGGCTGATGCTGAGCAGTGGCGCTCCGTGGCACGGG
AACTCGACCTGGACGTGGGTGATGATCTCCTTGCCGTCGATGAGCAGAGC
ACCGGCGCTGGCGACGCTGCGGCGTCGGGCGACAGCGATGCAACCATTGC
GGAGGGGCGCGCAGACGGCACCGCTTCTTGGGCGAGTTGGGGAAGCGGCA
GCGCATCGTGGACCAGTGCGAACGCAGTTGCAAAGGAGAGGGATCCAAAG
AAGGAAGTCGATATGTGGCGATCCAGTGCGCGCGAACTTACTGGCGCCGA
AGCTGCACCTGCTGCTGACCAGGCTGACGAGCCGTCTTCGTCGTCATGGG
CAAGTTGGCGGAACGCAAGTGCGTCATGGGAACTTGCCAACGAAACCGCA
GAAGCAAGAGACCCGAAGAAAGAGGTTGACATGTGGCGCTCTAGTGCTCG
CGAACTTACCTCTCCGGATTCGCCGGACGCGACCGTGTCAGGCAACTCTG
GCGACACGGAGGGACAGGCCAGCGCATGGGACTCGTGGCGAAATGCTAAT
GAACGTTGGATGCATTCTTTAGATGATGGGGGTATGAAGACGGAAGCGGC
GGATAATTGGTCGCCCGTAGCGGATACTCAGTCAGACTGGGGCGCTAATC
TAGGAGGTAAGACGTCGTCGGAGCGTTCGGCCTGGCAAGCTTGGGAAAAC
GCCGTTGAGCGACCGAATGCCTCTGTGCAACAGGAGTGGTGGAAAATGCG
AACAGATGCGGTGCAGCGGCCTGAACCAAAGGCGACCGACAGGTCTTCGG
AAGGTATCGATCAGTGGCGCGCAGCCGCAAAGGAAGTGTCCTTGGAAGGC
TTCAAAGAACAGGCCGGAGGATCAGCGGAGGATGTTAACGAGTCGAAGAC
ATCGCGTTTGGCCAATGATTCTTCCATCAACGCATGGAAGTCTGTAGCGA
GGGACCTCACGACCGAACCACTGACAGAAGATGAAGATGGGTCGTGA