Gchil10569.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10569.t1
Unique NameGchil10569.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length870
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:730043..732652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10569Gchil10569Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 730043..732652 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10569.t1.start1Gchil10569.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 730043..730045 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10569.t1.CDS1Gchil10569.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 730043..732652 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10569.t1.exon1Gchil10569.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 730043..732652 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10569.t1.stop1Gchil10569.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 732650..732652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10569.t1Gchil10569.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 730043..732652 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10569.t1 ID=Gchil10569.t1|Name=Gchil10569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=870bp
MDEPSTRPPLPPPSSQPPIAPSPRPTPPSSTTTIPAFYPSPTSVDLTASD
EAPEHQPHHDKPLSVNAAPTHSNNHAPIPPTPPLDNNKNNTSSRPQPLRP
HCVASHPQSHPHALQRPSDSADAPTTCARSSQQQLKLKLKLQQQQQQQQQ
QQQHQKQQRLPSVIVPPPSPALTNVTRSQFVEVLDNFLAQQPPDDCDHVD
YTALVNQLRVLFDHLDGLVEQLPLRTSNTVCDALAKPHALQALLILLSDI
SAKSSPVIRDVRRTYRYPYITTSILANGTMNFRDAFIASKPRVALLLSFL
DGNVPLLDSDAAATGADATGAQLARENAIIVGNVVQILVSYLGTNPEALI
EQIRERRTLIPALVDMLHIGSVPQLLGALIPDRCVDDVLMMDHGKASFDG
CMTSAMDVLASSQILHLLANAFVSATQTIYDECVNDTGAPTLEQVHRAEQ
LAFNVCEVYGMVVKKTLRAVRIHSDMAACKYLHVFGTASTSATVEVILNS
GIELFRETELRKSSMLELALSLTTQLLELVEEDAERRVASVTGQPAALDT
RALEHALQPILHNLMGVLIDTVSREKGQGGVRLRVLELLATCMRVCSEEL
MRFMDARRFGEVALTVMVKHPRCSLVQHVVCGAVESALLSPRATITSVTH
WLLRSKLAEVVMHLWRAYEGDERWWSPQRAQQAPLLSALVHLACCTQHLF
AMQEAHAASTASSSSAVTSAAAAAAAATPQVAVAPDTRRRFEDFCRSSLA
RIVADESVLCGPKPRRRSVMPAGVMGRTFGVLPRAGASASGAAASASASA
APFARRSGVANSGAVAHLVRSPSAHRFGYVPPVSSLRSRFDDVFVEGAHD
DFNSVASFAAFGDSDDLLA*
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spliced messenger RNA

>Gchil10569.t1 ID=Gchil10569.t1|Name=Gchil10569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2610bp|location=Sequence derived from alignment at tig00000159_pilon:730043..732652+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGAGCCATCGACGCGACCACCACTCCCCCCTCCCTCGTCGCAACC
GCCCATCGCGCCCTCCCCGCGCCCTACCCCCCCCTCTTCTACCACCACAA
TTCCCGCCTTTTACCCTTCGCCCACCTCCGTCGATCTCACCGCCTCGGAC
GAGGCCCCCGAGCACCAGCCTCACCACGACAAGCCGCTCTCCGTCAATGC
TGCCCCCACCCATTCTAACAACCACGCCCCAATACCACCCACCCCGCCCC
TGGATAACAACAAAAACAACACTTCCTCCCGCCCGCAACCACTGCGCCCA
CACTGTGTTGCCTCGCACCCGCAATCGCACCCACATGCCCTGCAACGCCC
CTCCGACTCTGCTGACGCGCCCACTACTTGTGCCCGCTCCTCACAGCAAC
AACTAAAACTAAAACTAAAACTGcaacaacaacaacaacaacaacaacaa
caacaacaacaccaaaaacagcaacGGTTGCCGTCAGTCATTGTGCCGCC
GCCTTCCCCCGcgctcaccaacgtgacgcgctcccagtttgttgaagttc
tggacaattttctcgcgcagcagccgccggacgactgcgaccacgtcgac
tacaccgcgctggtCAACCAGCTTCGCGTGTTGTTCGACCATCTAGACGG
GCTGGTTGAGCAACTGCCGTTGCGCACCAGCAACACCGTATGCGATGCGC
TCGCAAAACCACACGCGCTGCAGGCGCTACTTATTTTACTGTCTGACATT
TCGGCCAAGTCGTCGCCCGTCATTCGCGACGTGCGTCGAACCTATCGCTA
TCCTTACATTACCACCTCCATTCTGGCCAACGGCACCATGAACTTTCGAG
ACGCCTTCATAGCGTCCAAACCGCGAGTGGCGCTGTTGTTGTCGTTTCTC
GACGGCAACGTTCCGTTGCTTGACTCGGATGCCGCAGCCACCGGCGCGGA
TGCGACAGGGGCGCAGCTTGCGCGAGAAAACGCAATTATTGTGGGAAACG
TGGTGCAGATTCTGGTGTCGTACCTCGGAACGAACCCGGAGGCGCTGATT
GAGCAGATTCGAGAGCGGCGCACGCTTATTCCCGCGCTTGTGGACATGCT
TCACATTGGGTCGGTGCCGCAGCTTTTGGGGGCGCTCATCCCAGATCGCT
GCGTTGACGACGTGCTGATGATGGACCACGGCAAGGCGTCGTTTGACGGA
TGCATGACAAGTGCGATGGATGTGTTGGCGTCGTCGCAGATCTTGCACTT
GTTGGCCAACGCGTTTGTATCGGCAACGCAGACCATCTATGATGAATGCG
TGAACGACACGGGCGCTCCAACTTTGGAACAAGTACACCGGGCGGAGCAG
TTGGCGTTCAATGTGTGTGAGGTGTACGGCATGGTTGTGAAAAAGACGTT
GCGGGCGGTGCGGATTCACAGTGACATGGCGGCGTGCAAGTATCTGCACG
TGTTCGGAACGGCATCGACGAGCGCTACGGTAGAAGTGATACTCAACTCT
GGGATTGAGCTTTTCCGCGAGACTGAGCTGAGAAAGTCGAGCATGCTGGA
ACTGGCACTATCGCTGACGACGCAGCTGCTGGAACTGGTGGAGGAGGACG
CCGAGAGGAGAGTGGCAAGCGTGACGGGACAGCCGGCGGCGCTGGACACG
CGCGCGCTGGAGCACGCTCTGCAGCCGATCCTGCACAACTTGATGGGCGT
GCTGATCGACACGGTGAGCCGAGAGAAGGGACAGGGCGGAGTGCGACTGC
GCGTGCTGGAGCTGCTTGCGACTTGCATGCGCGTGTGTAGCGAGGAGCTG
ATGCGGTTCATGgacgcgagacggttcggggaggtggcgctgacggtgat
ggtgaAGCACCCGCGGTGCTCGCTTGTGCAGCACGTGGTGTGCGGCGCGG
TGGAGAGCGCGCTGCTGTCGCCGCGCGCGACGATCACGTCGGTGACACAC
TGGCTTCTGCGCAGCAAACTGGCCGAGGTGGTGATGCATCTGTGGCGGGC
GTACGAAGGCGACGAGCGATGGTGGTCGCCGCAGCGCGCGCAGCAGGCGC
CGTTGCTGTCGGCGCTGGTGCATCTTGCGTGCTGCACGCAGCACTTGTTC
GCCATGCAGGAAGcgcacgccgcctccaccgcttcctcctcctccgccgt
cacctccgctgctgccgccgccgccgccgccacgcctcaggtggccgtgg
cgcccgacacgcgccgccgcTTCGAAGACTTCTGCCGCTCGTCGCTGGCG
CGTATCGTGGCTGACGAGTCCGTGTTGTGCGGCCCTAAGCCACGCCGCCG
CTCGGTCATGCCTGCGGGCGTCATGGGTCGCACCTTTGGTGTACTGCCGC
GTGCTGGcgcttccgcctctggcgcggccgcctccgcctccgcctccgct
gcgccCTTTGCGCGTCGCTCCGGAGTCGCTAATAGTGGCGCCGTTGCCCA
TCTGGTGCGCTCGCCTAGCGCACATCGCTTTGGATATGTGCCGCCTGTCT
CATCGCTGCGCTCTCGCTTCGATGACGTGTTTGTGGAGGGCGCTCACGAC
GACTTTAACTCCGTCGCGTCGTTTGCCGCCTTTGGCGACAGCGATGACCT
CCTGGCATGA
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protein sequence of Gchil10569.t1

>Gchil10569.t1 ID=Gchil10569.t1|Name=Gchil10569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=870bp
MDEPSTRPPLPPPSSQPPIAPSPRPTPPSSTTTIPAFYPSPTSVDLTASD
EAPEHQPHHDKPLSVNAAPTHSNNHAPIPPTPPLDNNKNNTSSRPQPLRP
HCVASHPQSHPHALQRPSDSADAPTTCARSSQQQLKLKLKLQQQQQQQQQ
QQQHQKQQRLPSVIVPPPSPALTNVTRSQFVEVLDNFLAQQPPDDCDHVD
YTALVNQLRVLFDHLDGLVEQLPLRTSNTVCDALAKPHALQALLILLSDI
SAKSSPVIRDVRRTYRYPYITTSILANGTMNFRDAFIASKPRVALLLSFL
DGNVPLLDSDAAATGADATGAQLARENAIIVGNVVQILVSYLGTNPEALI
EQIRERRTLIPALVDMLHIGSVPQLLGALIPDRCVDDVLMMDHGKASFDG
CMTSAMDVLASSQILHLLANAFVSATQTIYDECVNDTGAPTLEQVHRAEQ
LAFNVCEVYGMVVKKTLRAVRIHSDMAACKYLHVFGTASTSATVEVILNS
GIELFRETELRKSSMLELALSLTTQLLELVEEDAERRVASVTGQPAALDT
RALEHALQPILHNLMGVLIDTVSREKGQGGVRLRVLELLATCMRVCSEEL
MRFMDARRFGEVALTVMVKHPRCSLVQHVVCGAVESALLSPRATITSVTH
WLLRSKLAEVVMHLWRAYEGDERWWSPQRAQQAPLLSALVHLACCTQHLF
AMQEAHAASTASSSSAVTSAAAAAAAATPQVAVAPDTRRRFEDFCRSSLA
RIVADESVLCGPKPRRRSVMPAGVMGRTFGVLPRAGASASGAAASASASA
APFARRSGVANSGAVAHLVRSPSAHRFGYVPPVSSLRSRFDDVFVEGAHD
DFNSVASFAAFGDSDDLLA*
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mRNA from alignment at tig00000159_pilon:730043..732652+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10569.t1 ID=Gchil10569.t1|Name=Gchil10569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2610bp|location=Sequence derived from alignment at tig00000159_pilon:730043..732652+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATGAGCCATCGACGCGACCACCACTCCCCCCTCCCTCGTCGCAACC GCCCATCGCGCCCTCCCCGCGCCCTACCCCCCCCTCTTCTACCACCACAA TTCCCGCCTTTTACCCTTCGCCCACCTCCGTCGATCTCACCGCCTCGGAC GAGGCCCCCGAGCACCAGCCTCACCACGACAAGCCGCTCTCCGTCAATGC TGCCCCCACCCATTCTAACAACCACGCCCCAATACCACCCACCCCGCCCC TGGATAACAACAAAAACAACACTTCCTCCCGCCCGCAACCACTGCGCCCA CACTGTGTTGCCTCGCACCCGCAATCGCACCCACATGCCCTGCAACGCCC CTCCGACTCTGCTGACGCGCCCACTACTTGTGCCCGCTCCTCACAGCAAC AACTAAAACTAAAACTAAAACTGcaacaacaacaacaacaacaacaacaa caacaacaacaccaaaaacagcaacGGTTGCCGTCAGTCATTGTGCCGCC GCCTTCCCCCGcgctcaccaacgtgacgcgctcccagtttgttgaagttc tggacaattttctcgcgcagcagccgccggacgactgcgaccacgtcgac tacaccgcgctggtCAACCAGCTTCGCGTGTTGTTCGACCATCTAGACGG GCTGGTTGAGCAACTGCCGTTGCGCACCAGCAACACCGTATGCGATGCGC TCGCAAAACCACACGCGCTGCAGGCGCTACTTATTTTACTGTCTGACATT TCGGCCAAGTCGTCGCCCGTCATTCGCGACGTGCGTCGAACCTATCGCTA TCCTTACATTACCACCTCCATTCTGGCCAACGGCACCATGAACTTTCGAG ACGCCTTCATAGCGTCCAAACCGCGAGTGGCGCTGTTGTTGTCGTTTCTC GACGGCAACGTTCCGTTGCTTGACTCGGATGCCGCAGCCACCGGCGCGGA TGCGACAGGGGCGCAGCTTGCGCGAGAAAACGCAATTATTGTGGGAAACG TGGTGCAGATTCTGGTGTCGTACCTCGGAACGAACCCGGAGGCGCTGATT GAGCAGATTCGAGAGCGGCGCACGCTTATTCCCGCGCTTGTGGACATGCT TCACATTGGGTCGGTGCCGCAGCTTTTGGGGGCGCTCATCCCAGATCGCT GCGTTGACGACGTGCTGATGATGGACCACGGCAAGGCGTCGTTTGACGGA TGCATGACAAGTGCGATGGATGTGTTGGCGTCGTCGCAGATCTTGCACTT GTTGGCCAACGCGTTTGTATCGGCAACGCAGACCATCTATGATGAATGCG TGAACGACACGGGCGCTCCAACTTTGGAACAAGTACACCGGGCGGAGCAG TTGGCGTTCAATGTGTGTGAGGTGTACGGCATGGTTGTGAAAAAGACGTT GCGGGCGGTGCGGATTCACAGTGACATGGCGGCGTGCAAGTATCTGCACG TGTTCGGAACGGCATCGACGAGCGCTACGGTAGAAGTGATACTCAACTCT GGGATTGAGCTTTTCCGCGAGACTGAGCTGAGAAAGTCGAGCATGCTGGA ACTGGCACTATCGCTGACGACGCAGCTGCTGGAACTGGTGGAGGAGGACG CCGAGAGGAGAGTGGCAAGCGTGACGGGACAGCCGGCGGCGCTGGACACG CGCGCGCTGGAGCACGCTCTGCAGCCGATCCTGCACAACTTGATGGGCGT GCTGATCGACACGGTGAGCCGAGAGAAGGGACAGGGCGGAGTGCGACTGC GCGTGCTGGAGCTGCTTGCGACTTGCATGCGCGTGTGTAGCGAGGAGCTG ATGCGGTTCATGgacgcgagacggttcggggaggtggcgctgacggtgat ggtgaAGCACCCGCGGTGCTCGCTTGTGCAGCACGTGGTGTGCGGCGCGG TGGAGAGCGCGCTGCTGTCGCCGCGCGCGACGATCACGTCGGTGACACAC TGGCTTCTGCGCAGCAAACTGGCCGAGGTGGTGATGCATCTGTGGCGGGC GTACGAAGGCGACGAGCGATGGTGGTCGCCGCAGCGCGCGCAGCAGGCGC CGTTGCTGTCGGCGCTGGTGCATCTTGCGTGCTGCACGCAGCACTTGTTC GCCATGCAGGAAGcgcacgccgcctccaccgcttcctcctcctccgccgt cacctccgctgctgccgccgccgccgccgccacgcctcaggtggccgtgg cgcccgacacgcgccgccgcTTCGAAGACTTCTGCCGCTCGTCGCTGGCG CGTATCGTGGCTGACGAGTCCGTGTTGTGCGGCCCTAAGCCACGCCGCCG CTCGGTCATGCCTGCGGGCGTCATGGGTCGCACCTTTGGTGTACTGCCGC GTGCTGGcgcttccgcctctggcgcggccgcctccgcctccgcctccgct gcgccCTTTGCGCGTCGCTCCGGAGTCGCTAATAGTGGCGCCGTTGCCCA TCTGGTGCGCTCGCCTAGCGCACATCGCTTTGGATATGTGCCGCCTGTCT CATCGCTGCGCTCTCGCTTCGATGACGTGTTTGTGGAGGGCGCTCACGAC GACTTTAACTCCGTCGCGTCGTTTGCCGCCTTTGGCGACAGCGATGACCT CCTGGCATGA
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Coding sequence (CDS) from alignment at tig00000159_pilon:730043..732652+

>Gchil10569.t1 ID=Gchil10569.t1|Name=Gchil10569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2610bp|location=Sequence derived from alignment at tig00000159_pilon:730043..732652+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATGAGCCATCGACGCGACCACCACTCCCCCCTCCCTCGTCGCAACC
GCCCATCGCGCCCTCCCCGCGCCCTACCCCCCCCTCTTCTACCACCACAA
TTCCCGCCTTTTACCCTTCGCCCACCTCCGTCGATCTCACCGCCTCGGAC
GAGGCCCCCGAGCACCAGCCTCACCACGACAAGCCGCTCTCCGTCAATGC
TGCCCCCACCCATTCTAACAACCACGCCCCAATACCACCCACCCCGCCCC
TGGATAACAACAAAAACAACACTTCCTCCCGCCCGCAACCACTGCGCCCA
CACTGTGTTGCCTCGCACCCGCAATCGCACCCACATGCCCTGCAACGCCC
CTCCGACTCTGCTGACGCGCCCACTACTTGTGCCCGCTCCTCACAGCAAC
AACTAAAACTAAAACTAAAACTGcaacaacaacaacaacaacaacaacaa
caacaacaacaccaaaaacagcaacGGTTGCCGTCAGTCATTGTGCCGCC
GCCTTCCCCCGcgctcaccaacgtgacgcgctcccagtttgttgaagttc
tggacaattttctcgcgcagcagccgccggacgactgcgaccacgtcgac
tacaccgcgctggtCAACCAGCTTCGCGTGTTGTTCGACCATCTAGACGG
GCTGGTTGAGCAACTGCCGTTGCGCACCAGCAACACCGTATGCGATGCGC
TCGCAAAACCACACGCGCTGCAGGCGCTACTTATTTTACTGTCTGACATT
TCGGCCAAGTCGTCGCCCGTCATTCGCGACGTGCGTCGAACCTATCGCTA
TCCTTACATTACCACCTCCATTCTGGCCAACGGCACCATGAACTTTCGAG
ACGCCTTCATAGCGTCCAAACCGCGAGTGGCGCTGTTGTTGTCGTTTCTC
GACGGCAACGTTCCGTTGCTTGACTCGGATGCCGCAGCCACCGGCGCGGA
TGCGACAGGGGCGCAGCTTGCGCGAGAAAACGCAATTATTGTGGGAAACG
TGGTGCAGATTCTGGTGTCGTACCTCGGAACGAACCCGGAGGCGCTGATT
GAGCAGATTCGAGAGCGGCGCACGCTTATTCCCGCGCTTGTGGACATGCT
TCACATTGGGTCGGTGCCGCAGCTTTTGGGGGCGCTCATCCCAGATCGCT
GCGTTGACGACGTGCTGATGATGGACCACGGCAAGGCGTCGTTTGACGGA
TGCATGACAAGTGCGATGGATGTGTTGGCGTCGTCGCAGATCTTGCACTT
GTTGGCCAACGCGTTTGTATCGGCAACGCAGACCATCTATGATGAATGCG
TGAACGACACGGGCGCTCCAACTTTGGAACAAGTACACCGGGCGGAGCAG
TTGGCGTTCAATGTGTGTGAGGTGTACGGCATGGTTGTGAAAAAGACGTT
GCGGGCGGTGCGGATTCACAGTGACATGGCGGCGTGCAAGTATCTGCACG
TGTTCGGAACGGCATCGACGAGCGCTACGGTAGAAGTGATACTCAACTCT
GGGATTGAGCTTTTCCGCGAGACTGAGCTGAGAAAGTCGAGCATGCTGGA
ACTGGCACTATCGCTGACGACGCAGCTGCTGGAACTGGTGGAGGAGGACG
CCGAGAGGAGAGTGGCAAGCGTGACGGGACAGCCGGCGGCGCTGGACACG
CGCGCGCTGGAGCACGCTCTGCAGCCGATCCTGCACAACTTGATGGGCGT
GCTGATCGACACGGTGAGCCGAGAGAAGGGACAGGGCGGAGTGCGACTGC
GCGTGCTGGAGCTGCTTGCGACTTGCATGCGCGTGTGTAGCGAGGAGCTG
ATGCGGTTCATGgacgcgagacggttcggggaggtggcgctgacggtgat
ggtgaAGCACCCGCGGTGCTCGCTTGTGCAGCACGTGGTGTGCGGCGCGG
TGGAGAGCGCGCTGCTGTCGCCGCGCGCGACGATCACGTCGGTGACACAC
TGGCTTCTGCGCAGCAAACTGGCCGAGGTGGTGATGCATCTGTGGCGGGC
GTACGAAGGCGACGAGCGATGGTGGTCGCCGCAGCGCGCGCAGCAGGCGC
CGTTGCTGTCGGCGCTGGTGCATCTTGCGTGCTGCACGCAGCACTTGTTC
GCCATGCAGGAAGcgcacgccgcctccaccgcttcctcctcctccgccgt
cacctccgctgctgccgccgccgccgccgccacgcctcaggtggccgtgg
cgcccgacacgcgccgccgcTTCGAAGACTTCTGCCGCTCGTCGCTGGCG
CGTATCGTGGCTGACGAGTCCGTGTTGTGCGGCCCTAAGCCACGCCGCCG
CTCGGTCATGCCTGCGGGCGTCATGGGTCGCACCTTTGGTGTACTGCCGC
GTGCTGGcgcttccgcctctggcgcggccgcctccgcctccgcctccgct
gcgccCTTTGCGCGTCGCTCCGGAGTCGCTAATAGTGGCGCCGTTGCCCA
TCTGGTGCGCTCGCCTAGCGCACATCGCTTTGGATATGTGCCGCCTGTCT
CATCGCTGCGCTCTCGCTTCGATGACGTGTTTGTGGAGGGCGCTCACGAC
GACTTTAACTCCGTCGCGTCGTTTGCCGCCTTTGGCGACAGCGATGACCT
CCTGGCATGA
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