Gchil10501.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10501.t1
Unique NameGchil10501.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length409
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:301283..302509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704426.1
PFAMsBSD
Max annot lvl2759|Eukaryota
Evalue3.8e-05
EggNOG OGs2E6PY@1|root,2SDCU@2759|Eukaryota
DescriptionBSD domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10501Gchil10501Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 301283..302509 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10501.t1.stop1Gchil10501.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 301283..301285 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10501.t1.CDS1Gchil10501.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 301283..302509 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10501.t1.exon1Gchil10501.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 301283..302509 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10501.t1.start1Gchil10501.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 302507..302509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10501.t1Gchil10501.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 301283..302509 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10501.t1 ID=Gchil10501.t1|Name=Gchil10501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=409bp
MKPFQQGDDDCAPICDAAVRNSMQMASSRAPARTLPVADAREAHPALSEA
TDDEKARDGELGESADAASQQATATTAAASQPNPLSAALTAAWSGWARGG
EKEGDDALQQQQQGEHWLGGAQRLWNTAVHDVGGRLRHAAQHVERGALAG
AEDVRRGVNAMHLAELVDNAARSLRASGEEARHIFVDAPDATAHTDRNDG
ISDGNGNGDGDACAPWDCLPEAERMHADALRAEMLRLAVDGVYNKRRREQ
LFVQLRVGQDQDKDKNEQQDDGVARAREAMGALKAHSSLRRLRAMLVPAR
VNERRFWAAYFWHVERVRAELLAGGDQTDGHVGGHIGDNGAHDGSDDGAR
DHERHKSGANDDDDDDDDDDDDDDDVDDDDDDKHDAHDAADQPHSEDDEE
FLSWRRGA*
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spliced messenger RNA

>Gchil10501.t1 ID=Gchil10501.t1|Name=Gchil10501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1227bp|location=Sequence derived from alignment at tig00000159_pilon:301283..302509- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACCATTTCAGCAGGGCGATGACGACTGCGCGCCGATCTGTGACGC
TGCCGTGCGCAACTCCATGCAGATGGCGTCTTCGCGCGCGCCGGCGCGCA
CTTTGCCCGTCGCTGACGCGCGCGAGGCGCACCCGGCGCTGTCCGAGGCT
ACCGACGATGAGAAAGCACGCGATGGCGAGCTCGGCGAAAGCGCCGACGC
CGCCAGTCAGCAAGCGACTGCTACTACTGCCGCTGCGTCGCAGCCCAACC
CCCTGTCCGCGGCGCTCACGGCCGCGTGGTCGGGGTGGGCGCGCGGCGGA
GAAAAGGAAGGTGATGATGCGTTGCAACAGCAACAACAAGGAGAACACTG
GCTGGGTGGCGCGCAGCGGCTGTGGAACACGGCCGTGCACGATGTGGGCG
GGCGTTTGCGCCACGCGGCGCAGCACGTGGAACGTGGCGCGCTGGCTGGC
GCAGAGGATGTGCGTCGCGGTGTGAACGCCATGCACCTCGCCGAGCTAGT
GGACAACGCCGCGCGCTCGCTGCGCGCCAGCGGCGAGGAGGCGCGCCACA
TATTCGTTGACGCCCCCGACGCTACGGCTCACACCGACCGAAACGATGGA
ATCAGCGACGGCAACGGCAACGGCGACGGCGACGCGTGCGCGCCGTGGGA
CTGTCTACCGGAGGCGGAGCGCATGCACGCAGACGCGCTCCGCGCAGAGA
TGCTACGACTAGCCGTGGATGGCGTGTACAACAAACGGCGTCGCGAGCAA
CTTTTCGTGCAATTGCGCGTGGGTCAGGACCAAGACAAGGACAAGAATGA
GCAGCAAGACGACGGTGTGGCGCGTGCGCGCGAGGCAATGGGCGCCTTGA
AGGCACACAGCAGTCTGCGACGACTGCGAGCCATGTTGGTGCCGGCACGC
GTGAATGAACGTCGCTTCTGGGCCGCGTACTTTTGGCATGTGGAGCGCGT
GCGCGCCGAGCTGCTTGCCGGCGGCGACCAGACCGATGGGCACGTGGGGG
GCCACATCGGGGACAACGGGGCGCACGACGGCAGCGACGACGGCGCACGC
GACCATGAACGCCACAAGTCCGGCGCAAACGACGACGACGACGACGACGA
CGACGACGACGACGACGACGACGATGTCGACGACGACGATGACGACAAGC
ACGATGCGCATGACGCTGCTGACCAGCCCCACAGCGAGGACGACGAGGAG
TTCCTGTCGTGGCGGCGCGGCGCGTGA
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protein sequence of Gchil10501.t1

>Gchil10501.t1 ID=Gchil10501.t1|Name=Gchil10501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=409bp
MKPFQQGDDDCAPICDAAVRNSMQMASSRAPARTLPVADAREAHPALSEA
TDDEKARDGELGESADAASQQATATTAAASQPNPLSAALTAAWSGWARGG
EKEGDDALQQQQQGEHWLGGAQRLWNTAVHDVGGRLRHAAQHVERGALAG
AEDVRRGVNAMHLAELVDNAARSLRASGEEARHIFVDAPDATAHTDRNDG
ISDGNGNGDGDACAPWDCLPEAERMHADALRAEMLRLAVDGVYNKRRREQ
LFVQLRVGQDQDKDKNEQQDDGVARAREAMGALKAHSSLRRLRAMLVPAR
VNERRFWAAYFWHVERVRAELLAGGDQTDGHVGGHIGDNGAHDGSDDGAR
DHERHKSGANDDDDDDDDDDDDDDDVDDDDDDKHDAHDAADQPHSEDDEE
FLSWRRGA*
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mRNA from alignment at tig00000159_pilon:301283..302509-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10501.t1 ID=Gchil10501.t1|Name=Gchil10501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1227bp|location=Sequence derived from alignment at tig00000159_pilon:301283..302509- (Gracilaria chilensis NLEC103_M9 male)
ATGAAACCATTTCAGCAGGGCGATGACGACTGCGCGCCGATCTGTGACGC
TGCCGTGCGCAACTCCATGCAGATGGCGTCTTCGCGCGCGCCGGCGCGCA
CTTTGCCCGTCGCTGACGCGCGCGAGGCGCACCCGGCGCTGTCCGAGGCT
ACCGACGATGAGAAAGCACGCGATGGCGAGCTCGGCGAAAGCGCCGACGC
CGCCAGTCAGCAAGCGACTGCTACTACTGCCGCTGCGTCGCAGCCCAACC
CCCTGTCCGCGGCGCTCACGGCCGCGTGGTCGGGGTGGGCGCGCGGCGGA
GAAAAGGAAGGTGATGATGCGTTGCAACAGCAACAACAAGGAGAACACTG
GCTGGGTGGCGCGCAGCGGCTGTGGAACACGGCCGTGCACGATGTGGGCG
GGCGTTTGCGCCACGCGGCGCAGCACGTGGAACGTGGCGCGCTGGCTGGC
GCAGAGGATGTGCGTCGCGGTGTGAACGCCATGCACCTCGCCGAGCTAGT
GGACAACGCCGCGCGCTCGCTGCGCGCCAGCGGCGAGGAGGCGCGCCACA
TATTCGTTGACGCCCCCGACGCTACGGCTCACACCGACCGAAACGATGGA
ATCAGCGACGGCAACGGCAACGGCGACGGCGACGCGTGCGCGCCGTGGGA
CTGTCTACCGGAGGCGGAGCGCATGCACGCAGACGCGCTCCGCGCAGAGA
TGCTACGACTAGCCGTGGATGGCGTGTACAACAAACGGCGTCGCGAGCAA
CTTTTCGTGCAATTGCGCGTGGGTCAGGACCAAGACAAGGACAAGAATGA
GCAGCAAGACGACGGTGTGGCGCGTGCGCGCGAGGCAATGGGCGCCTTGA
AGGCACACAGCAGTCTGCGACGACTGCGAGCCATGTTGGTGCCGGCACGC
GTGAATGAACGTCGCTTCTGGGCCGCGTACTTTTGGCATGTGGAGCGCGT
GCGCGCCGAGCTGCTTGCCGGCGGCGACCAGACCGATGGGCACGTGGGGG
GCCACATCGGGGACAACGGGGCGCACGACGGCAGCGACGACGGCGCACGC
GACCATGAACGCCACAAGTCCGGCGCAAACGACGACGACGACGACGACGA
CGACGACGACGACGACGACGACGATGTCGACGACGACGATGACGACAAGC
ACGATGCGCATGACGCTGCTGACCAGCCCCACAGCGAGGACGACGAGGAG
TTCCTGTCGTGGCGGCGCGGCGCGTGA
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Coding sequence (CDS) from alignment at tig00000159_pilon:301283..302509-

>Gchil10501.t1 ID=Gchil10501.t1|Name=Gchil10501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1227bp|location=Sequence derived from alignment at tig00000159_pilon:301283..302509- (Gracilaria chilensis NLEC103_M9 male)
ATGAAACCATTTCAGCAGGGCGATGACGACTGCGCGCCGATCTGTGACGC
TGCCGTGCGCAACTCCATGCAGATGGCGTCTTCGCGCGCGCCGGCGCGCA
CTTTGCCCGTCGCTGACGCGCGCGAGGCGCACCCGGCGCTGTCCGAGGCT
ACCGACGATGAGAAAGCACGCGATGGCGAGCTCGGCGAAAGCGCCGACGC
CGCCAGTCAGCAAGCGACTGCTACTACTGCCGCTGCGTCGCAGCCCAACC
CCCTGTCCGCGGCGCTCACGGCCGCGTGGTCGGGGTGGGCGCGCGGCGGA
GAAAAGGAAGGTGATGATGCGTTGCAACAGCAACAACAAGGAGAACACTG
GCTGGGTGGCGCGCAGCGGCTGTGGAACACGGCCGTGCACGATGTGGGCG
GGCGTTTGCGCCACGCGGCGCAGCACGTGGAACGTGGCGCGCTGGCTGGC
GCAGAGGATGTGCGTCGCGGTGTGAACGCCATGCACCTCGCCGAGCTAGT
GGACAACGCCGCGCGCTCGCTGCGCGCCAGCGGCGAGGAGGCGCGCCACA
TATTCGTTGACGCCCCCGACGCTACGGCTCACACCGACCGAAACGATGGA
ATCAGCGACGGCAACGGCAACGGCGACGGCGACGCGTGCGCGCCGTGGGA
CTGTCTACCGGAGGCGGAGCGCATGCACGCAGACGCGCTCCGCGCAGAGA
TGCTACGACTAGCCGTGGATGGCGTGTACAACAAACGGCGTCGCGAGCAA
CTTTTCGTGCAATTGCGCGTGGGTCAGGACCAAGACAAGGACAAGAATGA
GCAGCAAGACGACGGTGTGGCGCGTGCGCGCGAGGCAATGGGCGCCTTGA
AGGCACACAGCAGTCTGCGACGACTGCGAGCCATGTTGGTGCCGGCACGC
GTGAATGAACGTCGCTTCTGGGCCGCGTACTTTTGGCATGTGGAGCGCGT
GCGCGCCGAGCTGCTTGCCGGCGGCGACCAGACCGATGGGCACGTGGGGG
GCCACATCGGGGACAACGGGGCGCACGACGGCAGCGACGACGGCGCACGC
GACCATGAACGCCACAAGTCCGGCGCAAACGACGACGACGACGACGACGA
CGACGACGACGACGACGACGACGATGTCGACGACGACGATGACGACAAGC
ACGATGCGCATGACGCTGCTGACCAGCCCCACAGCGAGGACGACGAGGAG
TTCCTGTCGTGGCGGCGCGGCGCGTGA
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