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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 130081.XP_005704426.1 |
PFAMs | BSD |
Max annot lvl | 2759|Eukaryota |
Evalue | 3.8e-05 |
EggNOG OGs | 2E6PY@1|root,2SDCU@2759|Eukaryota |
Description | BSD domain |
COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil10501.t1 ID=Gchil10501.t1|Name=Gchil10501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=409bp MKPFQQGDDDCAPICDAAVRNSMQMASSRAPARTLPVADAREAHPALSEA TDDEKARDGELGESADAASQQATATTAAASQPNPLSAALTAAWSGWARGG EKEGDDALQQQQQGEHWLGGAQRLWNTAVHDVGGRLRHAAQHVERGALAG AEDVRRGVNAMHLAELVDNAARSLRASGEEARHIFVDAPDATAHTDRNDG ISDGNGNGDGDACAPWDCLPEAERMHADALRAEMLRLAVDGVYNKRRREQ LFVQLRVGQDQDKDKNEQQDDGVARAREAMGALKAHSSLRRLRAMLVPAR VNERRFWAAYFWHVERVRAELLAGGDQTDGHVGGHIGDNGAHDGSDDGAR DHERHKSGANDDDDDDDDDDDDDDDVDDDDDDKHDAHDAADQPHSEDDEE FLSWRRGA* back to topspliced messenger RNA >Gchil10501.t1 ID=Gchil10501.t1|Name=Gchil10501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1227bp|location=Sequence derived from alignment at tig00000159_pilon:301283..302509- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGAAACCATTTCAGCAGGGCGATGACGACTGCGCGCCGATCTGTGACGC TGCCGTGCGCAACTCCATGCAGATGGCGTCTTCGCGCGCGCCGGCGCGCA CTTTGCCCGTCGCTGACGCGCGCGAGGCGCACCCGGCGCTGTCCGAGGCT ACCGACGATGAGAAAGCACGCGATGGCGAGCTCGGCGAAAGCGCCGACGC CGCCAGTCAGCAAGCGACTGCTACTACTGCCGCTGCGTCGCAGCCCAACC CCCTGTCCGCGGCGCTCACGGCCGCGTGGTCGGGGTGGGCGCGCGGCGGA GAAAAGGAAGGTGATGATGCGTTGCAACAGCAACAACAAGGAGAACACTG GCTGGGTGGCGCGCAGCGGCTGTGGAACACGGCCGTGCACGATGTGGGCG GGCGTTTGCGCCACGCGGCGCAGCACGTGGAACGTGGCGCGCTGGCTGGC GCAGAGGATGTGCGTCGCGGTGTGAACGCCATGCACCTCGCCGAGCTAGT GGACAACGCCGCGCGCTCGCTGCGCGCCAGCGGCGAGGAGGCGCGCCACA TATTCGTTGACGCCCCCGACGCTACGGCTCACACCGACCGAAACGATGGA ATCAGCGACGGCAACGGCAACGGCGACGGCGACGCGTGCGCGCCGTGGGA CTGTCTACCGGAGGCGGAGCGCATGCACGCAGACGCGCTCCGCGCAGAGA TGCTACGACTAGCCGTGGATGGCGTGTACAACAAACGGCGTCGCGAGCAA CTTTTCGTGCAATTGCGCGTGGGTCAGGACCAAGACAAGGACAAGAATGA GCAGCAAGACGACGGTGTGGCGCGTGCGCGCGAGGCAATGGGCGCCTTGA AGGCACACAGCAGTCTGCGACGACTGCGAGCCATGTTGGTGCCGGCACGC GTGAATGAACGTCGCTTCTGGGCCGCGTACTTTTGGCATGTGGAGCGCGT GCGCGCCGAGCTGCTTGCCGGCGGCGACCAGACCGATGGGCACGTGGGGG GCCACATCGGGGACAACGGGGCGCACGACGGCAGCGACGACGGCGCACGC GACCATGAACGCCACAAGTCCGGCGCAAACGACGACGACGACGACGACGA CGACGACGACGACGACGACGACGATGTCGACGACGACGATGACGACAAGC ACGATGCGCATGACGCTGCTGACCAGCCCCACAGCGAGGACGACGAGGAG TTCCTGTCGTGGCGGCGCGGCGCGTGA back to topprotein sequence of Gchil10501.t1 >Gchil10501.t1 ID=Gchil10501.t1|Name=Gchil10501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=409bp
MKPFQQGDDDCAPICDAAVRNSMQMASSRAPARTLPVADAREAHPALSEA TDDEKARDGELGESADAASQQATATTAAASQPNPLSAALTAAWSGWARGG EKEGDDALQQQQQGEHWLGGAQRLWNTAVHDVGGRLRHAAQHVERGALAG AEDVRRGVNAMHLAELVDNAARSLRASGEEARHIFVDAPDATAHTDRNDG ISDGNGNGDGDACAPWDCLPEAERMHADALRAEMLRLAVDGVYNKRRREQ LFVQLRVGQDQDKDKNEQQDDGVARAREAMGALKAHSSLRRLRAMLVPAR VNERRFWAAYFWHVERVRAELLAGGDQTDGHVGGHIGDNGAHDGSDDGAR DHERHKSGANDDDDDDDDDDDDDDDVDDDDDDKHDAHDAADQPHSEDDEE FLSWRRGA* back to topmRNA from alignment at tig00000159_pilon:301283..302509- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil10501.t1 ID=Gchil10501.t1|Name=Gchil10501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1227bp|location=Sequence derived from alignment at tig00000159_pilon:301283..302509- (Gracilaria chilensis NLEC103_M9 male) ATGAAACCATTTCAGCAGGGCGATGACGACTGCGCGCCGATCTGTGACGC
TGCCGTGCGCAACTCCATGCAGATGGCGTCTTCGCGCGCGCCGGCGCGCA
CTTTGCCCGTCGCTGACGCGCGCGAGGCGCACCCGGCGCTGTCCGAGGCT
ACCGACGATGAGAAAGCACGCGATGGCGAGCTCGGCGAAAGCGCCGACGC
CGCCAGTCAGCAAGCGACTGCTACTACTGCCGCTGCGTCGCAGCCCAACC
CCCTGTCCGCGGCGCTCACGGCCGCGTGGTCGGGGTGGGCGCGCGGCGGA
GAAAAGGAAGGTGATGATGCGTTGCAACAGCAACAACAAGGAGAACACTG
GCTGGGTGGCGCGCAGCGGCTGTGGAACACGGCCGTGCACGATGTGGGCG
GGCGTTTGCGCCACGCGGCGCAGCACGTGGAACGTGGCGCGCTGGCTGGC
GCAGAGGATGTGCGTCGCGGTGTGAACGCCATGCACCTCGCCGAGCTAGT
GGACAACGCCGCGCGCTCGCTGCGCGCCAGCGGCGAGGAGGCGCGCCACA
TATTCGTTGACGCCCCCGACGCTACGGCTCACACCGACCGAAACGATGGA
ATCAGCGACGGCAACGGCAACGGCGACGGCGACGCGTGCGCGCCGTGGGA
CTGTCTACCGGAGGCGGAGCGCATGCACGCAGACGCGCTCCGCGCAGAGA
TGCTACGACTAGCCGTGGATGGCGTGTACAACAAACGGCGTCGCGAGCAA
CTTTTCGTGCAATTGCGCGTGGGTCAGGACCAAGACAAGGACAAGAATGA
GCAGCAAGACGACGGTGTGGCGCGTGCGCGCGAGGCAATGGGCGCCTTGA
AGGCACACAGCAGTCTGCGACGACTGCGAGCCATGTTGGTGCCGGCACGC
GTGAATGAACGTCGCTTCTGGGCCGCGTACTTTTGGCATGTGGAGCGCGT
GCGCGCCGAGCTGCTTGCCGGCGGCGACCAGACCGATGGGCACGTGGGGG
GCCACATCGGGGACAACGGGGCGCACGACGGCAGCGACGACGGCGCACGC
GACCATGAACGCCACAAGTCCGGCGCAAACGACGACGACGACGACGACGA
CGACGACGACGACGACGACGACGATGTCGACGACGACGATGACGACAAGC
ACGATGCGCATGACGCTGCTGACCAGCCCCACAGCGAGGACGACGAGGAG
TTCCTGTCGTGGCGGCGCGGCGCGTGA back to topCoding sequence (CDS) from alignment at tig00000159_pilon:301283..302509- >Gchil10501.t1 ID=Gchil10501.t1|Name=Gchil10501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1227bp|location=Sequence derived from alignment at tig00000159_pilon:301283..302509- (Gracilaria chilensis NLEC103_M9 male) ATGAAACCATTTCAGCAGGGCGATGACGACTGCGCGCCGATCTGTGACGC TGCCGTGCGCAACTCCATGCAGATGGCGTCTTCGCGCGCGCCGGCGCGCA CTTTGCCCGTCGCTGACGCGCGCGAGGCGCACCCGGCGCTGTCCGAGGCT ACCGACGATGAGAAAGCACGCGATGGCGAGCTCGGCGAAAGCGCCGACGC CGCCAGTCAGCAAGCGACTGCTACTACTGCCGCTGCGTCGCAGCCCAACC CCCTGTCCGCGGCGCTCACGGCCGCGTGGTCGGGGTGGGCGCGCGGCGGA GAAAAGGAAGGTGATGATGCGTTGCAACAGCAACAACAAGGAGAACACTG GCTGGGTGGCGCGCAGCGGCTGTGGAACACGGCCGTGCACGATGTGGGCG GGCGTTTGCGCCACGCGGCGCAGCACGTGGAACGTGGCGCGCTGGCTGGC GCAGAGGATGTGCGTCGCGGTGTGAACGCCATGCACCTCGCCGAGCTAGT GGACAACGCCGCGCGCTCGCTGCGCGCCAGCGGCGAGGAGGCGCGCCACA TATTCGTTGACGCCCCCGACGCTACGGCTCACACCGACCGAAACGATGGA ATCAGCGACGGCAACGGCAACGGCGACGGCGACGCGTGCGCGCCGTGGGA CTGTCTACCGGAGGCGGAGCGCATGCACGCAGACGCGCTCCGCGCAGAGA TGCTACGACTAGCCGTGGATGGCGTGTACAACAAACGGCGTCGCGAGCAA CTTTTCGTGCAATTGCGCGTGGGTCAGGACCAAGACAAGGACAAGAATGA GCAGCAAGACGACGGTGTGGCGCGTGCGCGCGAGGCAATGGGCGCCTTGA AGGCACACAGCAGTCTGCGACGACTGCGAGCCATGTTGGTGCCGGCACGC GTGAATGAACGTCGCTTCTGGGCCGCGTACTTTTGGCATGTGGAGCGCGT GCGCGCCGAGCTGCTTGCCGGCGGCGACCAGACCGATGGGCACGTGGGGG GCCACATCGGGGACAACGGGGCGCACGACGGCAGCGACGACGGCGCACGC GACCATGAACGCCACAAGTCCGGCGCAAACGACGACGACGACGACGACGA CGACGACGACGACGACGACGACGATGTCGACGACGACGATGACGACAAGC ACGATGCGCATGACGCTGCTGACCAGCCCCACAGCGAGGACGACGAGGAG TTCCTGTCGTGGCGGCGCGGCGCGTGA back to top
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