Gchil10123.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10123.t1
Unique NameGchil10123.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length317
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:1087260..1088210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709304.1
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG koko:K15111
KEGG TC2.A.29.18
Evalue2.02e-88
EggNOG OGsKOG0768@1|root,KOG0768@2759|Eukaryota
DescriptionS-adenosyl-L-methionine transmembrane transport
COG categoryU
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10123Gchil10123Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 1087260..1088210 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10123.t1.stop1Gchil10123.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 1087260..1087262 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10123.t1.CDS1Gchil10123.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1087260..1088210 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10123.t1.exon1Gchil10123.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1087260..1088210 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10123.t1.start1Gchil10123.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 1088208..1088210 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10123.t1Gchil10123.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 1087260..1088210 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10123.t1 ID=Gchil10123.t1|Name=Gchil10123.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=317bp
MGVCPPLLCPRRSRQVLLASSNAELPETVTPIETFRIALGAGAVAGFTVD
AVLFPLDTLKTRMQLASTVASKSSAALLSGLYAGFGPAVVASAPAAAAFF
GVYDYVKHVLEDFVGKNKPHYAPLCHMIAAAAGDVAGSTVRAPFEVVKQR
VQSGLYVGAGAAVRGTFAKEGLGGFYTGYGSLVIRELPFDAIQFPLYEYL
KSVVKKRKGTDCLETWESSACGSVAGAISAALTTPLDVVKTRLMTQNVAA
PKYEGIVHGISTIAREEGPKALMAGVVPRVMWISIGGAVFFGAYEAAKKI
LQPVIVKRSREGGKKP*
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spliced messenger RNA

>Gchil10123.t1 ID=Gchil10123.t1|Name=Gchil10123.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=951bp|location=Sequence derived from alignment at tig00004442_pilon:1087260..1088210- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGTGTGTCCCCCATTACTATGTCCCAGAAGATCTCGGCAAGTGCT
GTTGGCCAGCTCTAATGCAGAACTGCCGGAGACTGTCACGCCTATAGAAA
CATTTCGAATCGCTCTTGGCGCAGGAGCGGTGGCAGGCTTCACAGTGGAT
GCGGTTCTTTTCCCTCTAGACACGTTAAAAACAAGGATGCAATTGGCATC
CACTGTAGCTTCAAAATCATCAGCTGCATTATTGTCTGGTCTGTATGCAG
GTTTCGGACCTGCTGTGGTAGCGTCTGCCCCAGCGGCTGCGGCATTCTTT
GGGGTATATGACTACGTTAAACATGTGTTGGAAGATTTTGTCGGGAAGAA
CAAACCACACTATGCGCCACTTTGTCATATGATTGCGGCTGCTGCTGGAG
ATGTCGCCGGTTCTACGGTGAGAGCGCCGTTTGAAGTTGTGAAACAACGG
GTACAATCAGGATTATACGTGGGAGCTGGAGCCGCTGTTCGTGGCACGTT
TGCAAAAGAAGGACTCGGGGGTTTTTACACTGGATACGGAAGCCTAGTGA
TCCGAGAATTACCATTCGATGCAATACAATTCCCGCTTTACGAATATCTG
AAAAGCGTAGTCAAGAAAAGAAAGGGAACGGATTGTTTGGAGACGTGGGA
AAGTTCTGCATGCGGGTCCGTGGCCGGTGCAATTTCAGCCGCTTTGACTA
CTCCGTTAGACGTAGTGAAGACCAGGCTGATGACGCAGAATGTGGCGGCG
CCAAAGTATGAGGGAATTGTGCATGGAATTAGTACGATTGCTAGAGAGGA
AGGGCCGAAAGCGTTGATGGCAGGCGTGGTTCCGAGAGTGATGTGGATTT
CGATTGGTGGTGCCGTGTTCTTCGGCGCTTATGAAGCCGCTAAGAAGATT
TTGCAGCCGGTGATTGTGAAGCGTTCGAGGGAGGGCGGGAAGAAGCCTTA
G
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protein sequence of Gchil10123.t1

>Gchil10123.t1 ID=Gchil10123.t1|Name=Gchil10123.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=317bp
MGVCPPLLCPRRSRQVLLASSNAELPETVTPIETFRIALGAGAVAGFTVD
AVLFPLDTLKTRMQLASTVASKSSAALLSGLYAGFGPAVVASAPAAAAFF
GVYDYVKHVLEDFVGKNKPHYAPLCHMIAAAAGDVAGSTVRAPFEVVKQR
VQSGLYVGAGAAVRGTFAKEGLGGFYTGYGSLVIRELPFDAIQFPLYEYL
KSVVKKRKGTDCLETWESSACGSVAGAISAALTTPLDVVKTRLMTQNVAA
PKYEGIVHGISTIAREEGPKALMAGVVPRVMWISIGGAVFFGAYEAAKKI
LQPVIVKRSREGGKKP*
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mRNA from alignment at tig00004442_pilon:1087260..1088210-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10123.t1 ID=Gchil10123.t1|Name=Gchil10123.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=951bp|location=Sequence derived from alignment at tig00004442_pilon:1087260..1088210- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTGTGTGTCCCCCATTACTATGTCCCAGAAGATCTCGGCAAGTGCT
GTTGGCCAGCTCTAATGCAGAACTGCCGGAGACTGTCACGCCTATAGAAA
CATTTCGAATCGCTCTTGGCGCAGGAGCGGTGGCAGGCTTCACAGTGGAT
GCGGTTCTTTTCCCTCTAGACACGTTAAAAACAAGGATGCAATTGGCATC
CACTGTAGCTTCAAAATCATCAGCTGCATTATTGTCTGGTCTGTATGCAG
GTTTCGGACCTGCTGTGGTAGCGTCTGCCCCAGCGGCTGCGGCATTCTTT
GGGGTATATGACTACGTTAAACATGTGTTGGAAGATTTTGTCGGGAAGAA
CAAACCACACTATGCGCCACTTTGTCATATGATTGCGGCTGCTGCTGGAG
ATGTCGCCGGTTCTACGGTGAGAGCGCCGTTTGAAGTTGTGAAACAACGG
GTACAATCAGGATTATACGTGGGAGCTGGAGCCGCTGTTCGTGGCACGTT
TGCAAAAGAAGGACTCGGGGGTTTTTACACTGGATACGGAAGCCTAGTGA
TCCGAGAATTACCATTCGATGCAATACAATTCCCGCTTTACGAATATCTG
AAAAGCGTAGTCAAGAAAAGAAAGGGAACGGATTGTTTGGAGACGTGGGA
AAGTTCTGCATGCGGGTCCGTGGCCGGTGCAATTTCAGCCGCTTTGACTA
CTCCGTTAGACGTAGTGAAGACCAGGCTGATGACGCAGAATGTGGCGGCG
CCAAAGTATGAGGGAATTGTGCATGGAATTAGTACGATTGCTAGAGAGGA
AGGGCCGAAAGCGTTGATGGCAGGCGTGGTTCCGAGAGTGATGTGGATTT
CGATTGGTGGTGCCGTGTTCTTCGGCGCTTATGAAGCCGCTAAGAAGATT
TTGCAGCCGGTGATTGTGAAGCGTTCGAGGGAGGGCGGGAAGAAGCCTTA
G
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Coding sequence (CDS) from alignment at tig00004442_pilon:1087260..1088210-

>Gchil10123.t1 ID=Gchil10123.t1|Name=Gchil10123.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=951bp|location=Sequence derived from alignment at tig00004442_pilon:1087260..1088210- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTGTGTGTCCCCCATTACTATGTCCCAGAAGATCTCGGCAAGTGCT
GTTGGCCAGCTCTAATGCAGAACTGCCGGAGACTGTCACGCCTATAGAAA
CATTTCGAATCGCTCTTGGCGCAGGAGCGGTGGCAGGCTTCACAGTGGAT
GCGGTTCTTTTCCCTCTAGACACGTTAAAAACAAGGATGCAATTGGCATC
CACTGTAGCTTCAAAATCATCAGCTGCATTATTGTCTGGTCTGTATGCAG
GTTTCGGACCTGCTGTGGTAGCGTCTGCCCCAGCGGCTGCGGCATTCTTT
GGGGTATATGACTACGTTAAACATGTGTTGGAAGATTTTGTCGGGAAGAA
CAAACCACACTATGCGCCACTTTGTCATATGATTGCGGCTGCTGCTGGAG
ATGTCGCCGGTTCTACGGTGAGAGCGCCGTTTGAAGTTGTGAAACAACGG
GTACAATCAGGATTATACGTGGGAGCTGGAGCCGCTGTTCGTGGCACGTT
TGCAAAAGAAGGACTCGGGGGTTTTTACACTGGATACGGAAGCCTAGTGA
TCCGAGAATTACCATTCGATGCAATACAATTCCCGCTTTACGAATATCTG
AAAAGCGTAGTCAAGAAAAGAAAGGGAACGGATTGTTTGGAGACGTGGGA
AAGTTCTGCATGCGGGTCCGTGGCCGGTGCAATTTCAGCCGCTTTGACTA
CTCCGTTAGACGTAGTGAAGACCAGGCTGATGACGCAGAATGTGGCGGCG
CCAAAGTATGAGGGAATTGTGCATGGAATTAGTACGATTGCTAGAGAGGA
AGGGCCGAAAGCGTTGATGGCAGGCGTGGTTCCGAGAGTGATGTGGATTT
CGATTGGTGGTGCCGTGTTCTTCGGCGCTTATGAAGCCGCTAAGAAGATT
TTGCAGCCGGTGATTGTGAAGCGTTCGAGGGAGGGCGGGAAGAAGCCTTA
G
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