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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 70448.A0A096P866 |
PFAMs | DUF3493 |
Max annot lvl | 3041|Chlorophyta |
Evalue | 9.49e-28 |
EggNOG OGs | 2CMTG@1|root,2QRW2@2759|Eukaryota,37QE1@33090|Viridiplantae,34I3Y@3041|Chlorophyta |
Description | Protein of unknown function (DUF3493) |
COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil10119.t1 ID=Gchil10119.t1|Name=Gchil10119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=286bp MGQTEQEPKKDSKPNDSTAQSSPREERFSQSAQEGIRNKIDTPNAQKYSQ RTRLREETEAPFRKARMFIYAGSAASAAVGAFISSLRIIAALFGVSGVQP LSETVPNVGINVSVVALCAFLLRLETKAGVRRLERMSRGAQIANLRFEDS VTRKITQLKELRSKFRVVLVAGGKEDVSQVMRNAEQLRDQISKAGLLVIP FISDEMEQVPARNWRMQPYGKEEWKRWLASERDAAKKRMKDANDVLVVVI RLDGKVGARSVGAPLWSRLVEEVSRLPSKDQYGMP* back to topspliced messenger RNA >Gchil10119.t1 ID=Gchil10119.t1|Name=Gchil10119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00004442_pilon:1079094..1080043- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGGACAAACAGAACAAGAACCTAAAAAGGACTCCAAACCGAATGATTC CACCGCACAATCTTCGCCACGAGAAGAACGCTTTTCACAATCAGCACAAG AAGGTATCAGAAACAAAATAGACACCCCGAATGCGCAGAAATACTCGCAA CGCACGCGGCTAAGAGAAGAAACAGAAGCACCTTTCAGAAAAGCGAGAAT GTTTATTTACGCTGGTTCTGCTGCATCTGCTGCAGTTGGTGCATTCATCT CTTCCTTGCGTATAATCGCTGCGCTATTCGGCGTATCAGGTGTACAACCC CTCAGCGAAACAGTTCCAAACGTGGGTATCAACGTGAGTGTCGTCGCTCT ATGCGCTTTTTTGCTTCGACTGGAAACCAAAGCCGGCGTCCGGCGATTGG AACGAATGTCTCGTGGTGCACAAATTGCCAACCTACGTTTTGAGGATTCT GTGACCAGGAAGATCACTCAGCTAAAAGAACTGCGGAGCAAATTTCGGGT TGTACTAGTGGCTGGAGGAAAGGAGGACGTATCCCAAGTGATGAGGAATG CAGAGCAACTACGGGATCAAATTTCGAAGGCTGGTCTGTTGGTTATTCCG TTCATCTCCGACGAGATGGAACAAGTGCCTGCTCGAAACTGGAGAATGCA GCCATACGGAAAAGAGGAATGGAAGCGATGGCTCGCATCGGAGCGTGACG CTGCCAAGAAACGCATGAAAGATGCAAATGATGTTCTCGTCGTCGTCATT CGTCTCGATGGCAAGGTCGGGGCTCGCTCTGTCGGAGCGCCGTTGTGGTC ACGACTGGTAGAAGAGGTGTCTCGACTGCCGAGCAAAGATCAATACGGTA TGCCGTAA back to topprotein sequence of Gchil10119.t1 >Gchil10119.t1 ID=Gchil10119.t1|Name=Gchil10119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=286bp
MGQTEQEPKKDSKPNDSTAQSSPREERFSQSAQEGIRNKIDTPNAQKYSQ RTRLREETEAPFRKARMFIYAGSAASAAVGAFISSLRIIAALFGVSGVQP LSETVPNVGINVSVVALCAFLLRLETKAGVRRLERMSRGAQIANLRFEDS VTRKITQLKELRSKFRVVLVAGGKEDVSQVMRNAEQLRDQISKAGLLVIP FISDEMEQVPARNWRMQPYGKEEWKRWLASERDAAKKRMKDANDVLVVVI RLDGKVGARSVGAPLWSRLVEEVSRLPSKDQYGMP* back to topmRNA from alignment at tig00004442_pilon:1079094..1080043- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil10119.t1 ID=Gchil10119.t1|Name=Gchil10119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=950bp|location=Sequence derived from alignment at tig00004442_pilon:1079094..1080043- (Gracilaria chilensis NLEC103_M9 male) ATGGGACAAACAGAACAAGAACCTAAAAAGGACTCCAAACCGAATGATTC
CACCGCACAATCTTCGCCACGAGAAGAACGCTTTTCACAATCAGCACAAG
AAGGTATCAGAAACAAAATAGACACCCCGAATGCGCAGAAATACTCGCAA
CGCACGCGGCTAAGAGAAGAAACAGAAGCACCTTTCAGAAAAGCGAGAAT
GTTTATTTACGCTGGTTCTGCTGCATCTGCTGCAGTTGGTGCATTCATCT
CTTCCTTGCGTATAATCGCTGCGCTATTCGGCGTATCAGGTGTACAACCC
CTCAGCGAAACAGTACGTTGGAGAGTACCCACTATTGTTCAATGTATCGA
GAACATGCTACTGACCATCTGGCGCTTCCTGCTCTTGCTTGTTTTCTTGA
CAAGGTTCCAAACGTGGGTATCAACGTGAGTGTCGTCGCTCTATGCGCTT
TTTTGCTTCGACTGGAAACCAAAGCCGGCGTCCGGCGATTGGAACGAATG
TCTCGTGGTGCACAAATTGCCAACCTACGTTTTGAGGATTCTGTGACCAG
GAAGATCACTCAGCTAAAAGAACTGCGGAGCAAATTTCGGGTTGTACTAG
TGGCTGGAGGAAAGGAGGACGTATCCCAAGTGATGAGGAATGCAGAGCAA
CTACGGGATCAAATTTCGAAGGCTGGTCTGTTGGTTATTCCGTTCATCTC
CGACGAGATGGAACAAGTGCCTGCTCGAAACTGGAGAATGCAGCCATACG
GAAAAGAGGAATGGAAGCGATGGCTCGCATCGGAGCGTGACGCTGCCAAG
AAACGCATGAAAGATGCAAATGATGTTCTCGTCGTCGTCATTCGTCTCGA
TGGCAAGGTCGGGGCTCGCTCTGTCGGAGCGCCGTTGTGGTCACGACTGG
TAGAAGAGGTGTCTCGACTGCCGAGCAAAGATCAATACGGTATGCCGTAA
back to topCoding sequence (CDS) from alignment at tig00004442_pilon:1079094..1080043- >Gchil10119.t1 ID=Gchil10119.t1|Name=Gchil10119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=858bp|location=Sequence derived from alignment at tig00004442_pilon:1079094..1080043- (Gracilaria chilensis NLEC103_M9 male) ATGGGACAAACAGAACAAGAACCTAAAAAGGACTCCAAACCGAATGATTC CACCGCACAATCTTCGCCACGAGAAGAACGCTTTTCACAATCAGCACAAG AAGGTATCAGAAACAAAATAGACACCCCGAATGCGCAGAAATACTCGCAA CGCACGCGGCTAAGAGAAGAAACAGAAGCACCTTTCAGAAAAGCGAGAAT GTTTATTTACGCTGGTTCTGCTGCATCTGCTGCAGTTGGTGCATTCATCT CTTCCTTGCGTATAATCGCTGCGCTATTCGGCGTATCAGGTGTACAACCC CTCAGCGAAACAGTTCCAAACGTGGGTATCAACGTGAGTGTCGTCGCTCT ATGCGCTTTTTTGCTTCGACTGGAAACCAAAGCCGGCGTCCGGCGATTGG AACGAATGTCTCGTGGTGCACAAATTGCCAACCTACGTTTTGAGGATTCT GTGACCAGGAAGATCACTCAGCTAAAAGAACTGCGGAGCAAATTTCGGGT TGTACTAGTGGCTGGAGGAAAGGAGGACGTATCCCAAGTGATGAGGAATG CAGAGCAACTACGGGATCAAATTTCGAAGGCTGGTCTGTTGGTTATTCCG TTCATCTCCGACGAGATGGAACAAGTGCCTGCTCGAAACTGGAGAATGCA GCCATACGGAAAAGAGGAATGGAAGCGATGGCTCGCATCGGAGCGTGACG CTGCCAAGAAACGCATGAAAGATGCAAATGATGTTCTCGTCGTCGTCATT CGTCTCGATGGCAAGGTCGGGGCTCGCTCTGTCGGAGCGCCGTTGTGGTC ACGACTGGTAGAAGAGGTGTCTCGACTGCCGAGCAAAGATCAATACGGTA TGCCGTAA back to top
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