Gchil10119.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10119.t1
Unique NameGchil10119.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length286
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:1079094..1080043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog70448.A0A096P866
PFAMsDUF3493
Max annot lvl3041|Chlorophyta
Evalue9.49e-28
EggNOG OGs2CMTG@1|root,2QRW2@2759|Eukaryota,37QE1@33090|Viridiplantae,34I3Y@3041|Chlorophyta
DescriptionProtein of unknown function (DUF3493)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10119Gchil10119Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 1079094..1080043 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10119.t1Gchil10119.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 1079094..1080043 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10119.t1.stop1Gchil10119.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 1079094..1079096 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10119.t1.CDS1Gchil10119.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1079094..1079639 -
Gchil10119.t1.CDS2Gchil10119.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1079732..1080043 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10119.t1.exon1Gchil10119.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1079094..1079639 -
Gchil10119.t1.exon2Gchil10119.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1079732..1080043 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10119.t1.intron1Gchil10119.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 1079640..1079731 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10119.t1.start1Gchil10119.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 1080041..1080043 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10119.t1 ID=Gchil10119.t1|Name=Gchil10119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=286bp
MGQTEQEPKKDSKPNDSTAQSSPREERFSQSAQEGIRNKIDTPNAQKYSQ
RTRLREETEAPFRKARMFIYAGSAASAAVGAFISSLRIIAALFGVSGVQP
LSETVPNVGINVSVVALCAFLLRLETKAGVRRLERMSRGAQIANLRFEDS
VTRKITQLKELRSKFRVVLVAGGKEDVSQVMRNAEQLRDQISKAGLLVIP
FISDEMEQVPARNWRMQPYGKEEWKRWLASERDAAKKRMKDANDVLVVVI
RLDGKVGARSVGAPLWSRLVEEVSRLPSKDQYGMP*
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spliced messenger RNA

>Gchil10119.t1 ID=Gchil10119.t1|Name=Gchil10119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00004442_pilon:1079094..1080043- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACAAACAGAACAAGAACCTAAAAAGGACTCCAAACCGAATGATTC
CACCGCACAATCTTCGCCACGAGAAGAACGCTTTTCACAATCAGCACAAG
AAGGTATCAGAAACAAAATAGACACCCCGAATGCGCAGAAATACTCGCAA
CGCACGCGGCTAAGAGAAGAAACAGAAGCACCTTTCAGAAAAGCGAGAAT
GTTTATTTACGCTGGTTCTGCTGCATCTGCTGCAGTTGGTGCATTCATCT
CTTCCTTGCGTATAATCGCTGCGCTATTCGGCGTATCAGGTGTACAACCC
CTCAGCGAAACAGTTCCAAACGTGGGTATCAACGTGAGTGTCGTCGCTCT
ATGCGCTTTTTTGCTTCGACTGGAAACCAAAGCCGGCGTCCGGCGATTGG
AACGAATGTCTCGTGGTGCACAAATTGCCAACCTACGTTTTGAGGATTCT
GTGACCAGGAAGATCACTCAGCTAAAAGAACTGCGGAGCAAATTTCGGGT
TGTACTAGTGGCTGGAGGAAAGGAGGACGTATCCCAAGTGATGAGGAATG
CAGAGCAACTACGGGATCAAATTTCGAAGGCTGGTCTGTTGGTTATTCCG
TTCATCTCCGACGAGATGGAACAAGTGCCTGCTCGAAACTGGAGAATGCA
GCCATACGGAAAAGAGGAATGGAAGCGATGGCTCGCATCGGAGCGTGACG
CTGCCAAGAAACGCATGAAAGATGCAAATGATGTTCTCGTCGTCGTCATT
CGTCTCGATGGCAAGGTCGGGGCTCGCTCTGTCGGAGCGCCGTTGTGGTC
ACGACTGGTAGAAGAGGTGTCTCGACTGCCGAGCAAAGATCAATACGGTA
TGCCGTAA
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protein sequence of Gchil10119.t1

>Gchil10119.t1 ID=Gchil10119.t1|Name=Gchil10119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=286bp
MGQTEQEPKKDSKPNDSTAQSSPREERFSQSAQEGIRNKIDTPNAQKYSQ
RTRLREETEAPFRKARMFIYAGSAASAAVGAFISSLRIIAALFGVSGVQP
LSETVPNVGINVSVVALCAFLLRLETKAGVRRLERMSRGAQIANLRFEDS
VTRKITQLKELRSKFRVVLVAGGKEDVSQVMRNAEQLRDQISKAGLLVIP
FISDEMEQVPARNWRMQPYGKEEWKRWLASERDAAKKRMKDANDVLVVVI
RLDGKVGARSVGAPLWSRLVEEVSRLPSKDQYGMP*
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mRNA from alignment at tig00004442_pilon:1079094..1080043-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10119.t1 ID=Gchil10119.t1|Name=Gchil10119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=950bp|location=Sequence derived from alignment at tig00004442_pilon:1079094..1080043- (Gracilaria chilensis NLEC103_M9 male)
ATGGGACAAACAGAACAAGAACCTAAAAAGGACTCCAAACCGAATGATTC
CACCGCACAATCTTCGCCACGAGAAGAACGCTTTTCACAATCAGCACAAG
AAGGTATCAGAAACAAAATAGACACCCCGAATGCGCAGAAATACTCGCAA
CGCACGCGGCTAAGAGAAGAAACAGAAGCACCTTTCAGAAAAGCGAGAAT
GTTTATTTACGCTGGTTCTGCTGCATCTGCTGCAGTTGGTGCATTCATCT
CTTCCTTGCGTATAATCGCTGCGCTATTCGGCGTATCAGGTGTACAACCC
CTCAGCGAAACAGTACGTTGGAGAGTACCCACTATTGTTCAATGTATCGA
GAACATGCTACTGACCATCTGGCGCTTCCTGCTCTTGCTTGTTTTCTTGA
CAAGGTTCCAAACGTGGGTATCAACGTGAGTGTCGTCGCTCTATGCGCTT
TTTTGCTTCGACTGGAAACCAAAGCCGGCGTCCGGCGATTGGAACGAATG
TCTCGTGGTGCACAAATTGCCAACCTACGTTTTGAGGATTCTGTGACCAG
GAAGATCACTCAGCTAAAAGAACTGCGGAGCAAATTTCGGGTTGTACTAG
TGGCTGGAGGAAAGGAGGACGTATCCCAAGTGATGAGGAATGCAGAGCAA
CTACGGGATCAAATTTCGAAGGCTGGTCTGTTGGTTATTCCGTTCATCTC
CGACGAGATGGAACAAGTGCCTGCTCGAAACTGGAGAATGCAGCCATACG
GAAAAGAGGAATGGAAGCGATGGCTCGCATCGGAGCGTGACGCTGCCAAG
AAACGCATGAAAGATGCAAATGATGTTCTCGTCGTCGTCATTCGTCTCGA
TGGCAAGGTCGGGGCTCGCTCTGTCGGAGCGCCGTTGTGGTCACGACTGG
TAGAAGAGGTGTCTCGACTGCCGAGCAAAGATCAATACGGTATGCCGTAA
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Coding sequence (CDS) from alignment at tig00004442_pilon:1079094..1080043-

>Gchil10119.t1 ID=Gchil10119.t1|Name=Gchil10119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=858bp|location=Sequence derived from alignment at tig00004442_pilon:1079094..1080043- (Gracilaria chilensis NLEC103_M9 male)
ATGGGACAAACAGAACAAGAACCTAAAAAGGACTCCAAACCGAATGATTC
CACCGCACAATCTTCGCCACGAGAAGAACGCTTTTCACAATCAGCACAAG
AAGGTATCAGAAACAAAATAGACACCCCGAATGCGCAGAAATACTCGCAA
CGCACGCGGCTAAGAGAAGAAACAGAAGCACCTTTCAGAAAAGCGAGAAT
GTTTATTTACGCTGGTTCTGCTGCATCTGCTGCAGTTGGTGCATTCATCT
CTTCCTTGCGTATAATCGCTGCGCTATTCGGCGTATCAGGTGTACAACCC
CTCAGCGAAACAGTTCCAAACGTGGGTATCAACGTGAGTGTCGTCGCTCT
ATGCGCTTTTTTGCTTCGACTGGAAACCAAAGCCGGCGTCCGGCGATTGG
AACGAATGTCTCGTGGTGCACAAATTGCCAACCTACGTTTTGAGGATTCT
GTGACCAGGAAGATCACTCAGCTAAAAGAACTGCGGAGCAAATTTCGGGT
TGTACTAGTGGCTGGAGGAAAGGAGGACGTATCCCAAGTGATGAGGAATG
CAGAGCAACTACGGGATCAAATTTCGAAGGCTGGTCTGTTGGTTATTCCG
TTCATCTCCGACGAGATGGAACAAGTGCCTGCTCGAAACTGGAGAATGCA
GCCATACGGAAAAGAGGAATGGAAGCGATGGCTCGCATCGGAGCGTGACG
CTGCCAAGAAACGCATGAAAGATGCAAATGATGTTCTCGTCGTCGTCATT
CGTCTCGATGGCAAGGTCGGGGCTCGCTCTGTCGGAGCGCCGTTGTGGTC
ACGACTGGTAGAAGAGGTGTCTCGACTGCCGAGCAAAGATCAATACGGTA
TGCCGTAA
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