Gchil10013.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10013.t1
Unique NameGchil10013.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length506
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:253542..255059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog33188.XP_002541421.1
Preferred nameGYP1
PFAMsRabGAP-TBC
Max annot lvl4751|Fungi
KEGG koko:K20360
GOsGO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005794,GO:0006810,GO:0006886,GO:0008047,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016192,GO:0017016,GO:0017137,GO:0019899,GO:0030234,GO:0030695,GO:0031267,GO:0031338,GO:0032879,GO:0033036,GO:0033043,GO:0034613,GO:0042886,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046907,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0060589,GO:0060627,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0090630,GO:0098772
Evalue3.36e-68
EggNOG OGsKOG1092@1|root,KOG1092@2759|Eukaryota,38CKU@33154|Opisthokonta,3NWNR@4751|Fungi,3QP09@4890|Ascomycota,20BJ3@147545|Eurotiomycetes,3AZID@33183|Onygenales
DescriptionGTPase activating protein
COG categoryU
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10013Gchil10013Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 253542..255059 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10013.t1.start1Gchil10013.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 253542..253544 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10013.t1.CDS1Gchil10013.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 253542..255059 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10013.t1.exon1Gchil10013.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 253542..255059 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10013.t1.stop1Gchil10013.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 255057..255059 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10013.t1Gchil10013.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 253542..255059 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10013.t1 ID=Gchil10013.t1|Name=Gchil10013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=506bp
MAAEPVGEPKHVRPKDDEVAERGSDCRPCVYEHSHQNRSSFSSFLSNFIL
GPTRRKWIAKKNSNDGNAEQADAFPKGGDQYESSVYLSEEKGSAVKTPRS
KIDSRIPHVAFQSQKMDLLLLDEHPQIDLLKKTAWNGCSSKNRAQIWRLL
LGYEPLEYNNRHIVLEAKRAKYREYVRLFCESDTCPDFRNFGRFDSSESQ
CLKSEPLDLCEHSRHDPSLHDLGLCRLTESSSSTHFACRTLRQINLDLPR
TRPDVPIFHLSQIRNIMRRVLFLHSMLHPGKSYVQGMNEILTPLVVVYVS
NLIKVPSEKGVEDFLKRRALPSYVRERKLDAAEADIFWVFSQLVSFVEDN
FISEQPGILKRISRLHQIVSSVDPTLASHLTSVEVEFLQFAYRWMNCLLM
RELPLPLVVHVWDALLAEDDGVSDLLVYLCAALMVHFSDALLSMDFEEAI
LFLQHLPTKEWTETNIDEMLSQAYQWKETLGLESLALPLPRTPSVTDVKR
YARVS*
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spliced messenger RNA

>Gchil10013.t1 ID=Gchil10013.t1|Name=Gchil10013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1518bp|location=Sequence derived from alignment at tig00004442_pilon:253542..255059+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCGAGCCTGTCGGGGAACCGAAACACGTACGACCGAAGGATGA
TGAAGTTGCCGAACGTGGAAGTGATTGTCGACCTTGTGTTTATGAGCATT
CTCATCAAAACCGTAGCAGTTTTTCTTCATTTCTTTCGAACTTCATTCTT
GGACCAACTCGGAGAAAGTGGATTGCAAAGAAGAATTCTAATGATGGCAA
CGCAGAACAGGCTGATGCATTTCCGAAAGGAGGAGACCAATATGAATCGT
CGGTTTATCTTTCAGAAGAAAAAGGTAGTGCCGTGAAAACTCCAAGAAGT
AAAATTGATTCGAGAATACCTCATGTCGCTTTCCAATCTCAGAAAATGGA
TTTGTTGTTACTTGATGAGCATCCCCAAATCGACCTCCTCAAGAAAACCG
CTTGGAACGGATGCTCGTCCAAAAACAGAGCTCAAATTTGGCGTCTGTTG
CTCGGATACGAGCCCTTGGAATATAACAATAGGCACATTGTACTAGAAGC
AAAGCGAGCCAAATATCGGGAGTACGTAAGACTCTTTTGCGAATCAGATA
CATGCCCAGATTTTCGCAACTTTGGCCGCTTCGACAGTAGCGAATCTCAA
TGCCTTAAGAGCGAACCCCTTGATTTATGTGAACACAGTCGTCATGACCC
TTCACTCCATGATCTAGGTCTCTGTCGATTAACAGAGTCGAGTAGTTCGA
CACACTTTGCGTGCAGGACCCTTCGCCAGATTAATCTCGATTTACCACGG
ACTCGTCCTGATGTACCAATCTTTCATTTATCGCAAATAAGGAATATAAT
GCGAAGGGTTCTGTTCCTGCACAGCATGCTGCATCCAGGGAAAAGCTATG
TTCAAGGTATGAACGAGATCCTAACACCACTAGTTGTTGTGTACGTCAGC
AATCTGATCAAAGTTCCTAGCGAGAAAGGGGTCGAGGATTTCTTGAAGAG
AAGAGCGCTGCCTTCGTATGTGAGGGAAAGGAAGTTGGATGCTGCAGAGG
CGGATATTTTCTGGGTCTTTTCGCAACTAGTGTCATTTGTCGAAGATAAT
TTCATATCGGAACAGCCGGGAATTTTGAAACGGATATCACGACTACATCA
GATAGTGTCTAGCGTTGATCCAACTCTGGCATCACATCTCACCAGCGTTG
AGGTAGAGTTTTTGCAATTCGCCTACAGATGGATGAACTGTTTGCTAATG
AGGGAGCTCCCACTTCCTTTAGTTGTCCATGTTTGGGATGCTTTGTTGGC
AGAAGATGACGGTGTTTCCGATTTGCTCGTATATCTGTGTGCTGCTCTCA
TGGTCCATTTCAGCGACGCGCTGTTGTCAATGGACTTCGAGGAAGCAATA
CTTTTCCTTCAGCACTTGCCGACAAAGGAGTGGACAGAAACTAACATTGA
CGAAATGCTGAGCCAGGCATACCAATGGAAAGAGACTCTAGGCCTCGAAA
GTCTTGCTCTTCCTCTGCCAAGGACTCCATCTGTTACTGATGTGAAAAGG
TATGCTCGAGTATCTTGA
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protein sequence of Gchil10013.t1

>Gchil10013.t1 ID=Gchil10013.t1|Name=Gchil10013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=506bp
MAAEPVGEPKHVRPKDDEVAERGSDCRPCVYEHSHQNRSSFSSFLSNFIL
GPTRRKWIAKKNSNDGNAEQADAFPKGGDQYESSVYLSEEKGSAVKTPRS
KIDSRIPHVAFQSQKMDLLLLDEHPQIDLLKKTAWNGCSSKNRAQIWRLL
LGYEPLEYNNRHIVLEAKRAKYREYVRLFCESDTCPDFRNFGRFDSSESQ
CLKSEPLDLCEHSRHDPSLHDLGLCRLTESSSSTHFACRTLRQINLDLPR
TRPDVPIFHLSQIRNIMRRVLFLHSMLHPGKSYVQGMNEILTPLVVVYVS
NLIKVPSEKGVEDFLKRRALPSYVRERKLDAAEADIFWVFSQLVSFVEDN
FISEQPGILKRISRLHQIVSSVDPTLASHLTSVEVEFLQFAYRWMNCLLM
RELPLPLVVHVWDALLAEDDGVSDLLVYLCAALMVHFSDALLSMDFEEAI
LFLQHLPTKEWTETNIDEMLSQAYQWKETLGLESLALPLPRTPSVTDVKR
YARVS*
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mRNA from alignment at tig00004442_pilon:253542..255059+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10013.t1 ID=Gchil10013.t1|Name=Gchil10013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1518bp|location=Sequence derived from alignment at tig00004442_pilon:253542..255059+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGCCGAGCCTGTCGGGGAACCGAAACACGTACGACCGAAGGATGA
TGAAGTTGCCGAACGTGGAAGTGATTGTCGACCTTGTGTTTATGAGCATT
CTCATCAAAACCGTAGCAGTTTTTCTTCATTTCTTTCGAACTTCATTCTT
GGACCAACTCGGAGAAAGTGGATTGCAAAGAAGAATTCTAATGATGGCAA
CGCAGAACAGGCTGATGCATTTCCGAAAGGAGGAGACCAATATGAATCGT
CGGTTTATCTTTCAGAAGAAAAAGGTAGTGCCGTGAAAACTCCAAGAAGT
AAAATTGATTCGAGAATACCTCATGTCGCTTTCCAATCTCAGAAAATGGA
TTTGTTGTTACTTGATGAGCATCCCCAAATCGACCTCCTCAAGAAAACCG
CTTGGAACGGATGCTCGTCCAAAAACAGAGCTCAAATTTGGCGTCTGTTG
CTCGGATACGAGCCCTTGGAATATAACAATAGGCACATTGTACTAGAAGC
AAAGCGAGCCAAATATCGGGAGTACGTAAGACTCTTTTGCGAATCAGATA
CATGCCCAGATTTTCGCAACTTTGGCCGCTTCGACAGTAGCGAATCTCAA
TGCCTTAAGAGCGAACCCCTTGATTTATGTGAACACAGTCGTCATGACCC
TTCACTCCATGATCTAGGTCTCTGTCGATTAACAGAGTCGAGTAGTTCGA
CACACTTTGCGTGCAGGACCCTTCGCCAGATTAATCTCGATTTACCACGG
ACTCGTCCTGATGTACCAATCTTTCATTTATCGCAAATAAGGAATATAAT
GCGAAGGGTTCTGTTCCTGCACAGCATGCTGCATCCAGGGAAAAGCTATG
TTCAAGGTATGAACGAGATCCTAACACCACTAGTTGTTGTGTACGTCAGC
AATCTGATCAAAGTTCCTAGCGAGAAAGGGGTCGAGGATTTCTTGAAGAG
AAGAGCGCTGCCTTCGTATGTGAGGGAAAGGAAGTTGGATGCTGCAGAGG
CGGATATTTTCTGGGTCTTTTCGCAACTAGTGTCATTTGTCGAAGATAAT
TTCATATCGGAACAGCCGGGAATTTTGAAACGGATATCACGACTACATCA
GATAGTGTCTAGCGTTGATCCAACTCTGGCATCACATCTCACCAGCGTTG
AGGTAGAGTTTTTGCAATTCGCCTACAGATGGATGAACTGTTTGCTAATG
AGGGAGCTCCCACTTCCTTTAGTTGTCCATGTTTGGGATGCTTTGTTGGC
AGAAGATGACGGTGTTTCCGATTTGCTCGTATATCTGTGTGCTGCTCTCA
TGGTCCATTTCAGCGACGCGCTGTTGTCAATGGACTTCGAGGAAGCAATA
CTTTTCCTTCAGCACTTGCCGACAAAGGAGTGGACAGAAACTAACATTGA
CGAAATGCTGAGCCAGGCATACCAATGGAAAGAGACTCTAGGCCTCGAAA
GTCTTGCTCTTCCTCTGCCAAGGACTCCATCTGTTACTGATGTGAAAAGG
TATGCTCGAGTATCTTGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:253542..255059+

>Gchil10013.t1 ID=Gchil10013.t1|Name=Gchil10013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1518bp|location=Sequence derived from alignment at tig00004442_pilon:253542..255059+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGCCGAGCCTGTCGGGGAACCGAAACACGTACGACCGAAGGATGA
TGAAGTTGCCGAACGTGGAAGTGATTGTCGACCTTGTGTTTATGAGCATT
CTCATCAAAACCGTAGCAGTTTTTCTTCATTTCTTTCGAACTTCATTCTT
GGACCAACTCGGAGAAAGTGGATTGCAAAGAAGAATTCTAATGATGGCAA
CGCAGAACAGGCTGATGCATTTCCGAAAGGAGGAGACCAATATGAATCGT
CGGTTTATCTTTCAGAAGAAAAAGGTAGTGCCGTGAAAACTCCAAGAAGT
AAAATTGATTCGAGAATACCTCATGTCGCTTTCCAATCTCAGAAAATGGA
TTTGTTGTTACTTGATGAGCATCCCCAAATCGACCTCCTCAAGAAAACCG
CTTGGAACGGATGCTCGTCCAAAAACAGAGCTCAAATTTGGCGTCTGTTG
CTCGGATACGAGCCCTTGGAATATAACAATAGGCACATTGTACTAGAAGC
AAAGCGAGCCAAATATCGGGAGTACGTAAGACTCTTTTGCGAATCAGATA
CATGCCCAGATTTTCGCAACTTTGGCCGCTTCGACAGTAGCGAATCTCAA
TGCCTTAAGAGCGAACCCCTTGATTTATGTGAACACAGTCGTCATGACCC
TTCACTCCATGATCTAGGTCTCTGTCGATTAACAGAGTCGAGTAGTTCGA
CACACTTTGCGTGCAGGACCCTTCGCCAGATTAATCTCGATTTACCACGG
ACTCGTCCTGATGTACCAATCTTTCATTTATCGCAAATAAGGAATATAAT
GCGAAGGGTTCTGTTCCTGCACAGCATGCTGCATCCAGGGAAAAGCTATG
TTCAAGGTATGAACGAGATCCTAACACCACTAGTTGTTGTGTACGTCAGC
AATCTGATCAAAGTTCCTAGCGAGAAAGGGGTCGAGGATTTCTTGAAGAG
AAGAGCGCTGCCTTCGTATGTGAGGGAAAGGAAGTTGGATGCTGCAGAGG
CGGATATTTTCTGGGTCTTTTCGCAACTAGTGTCATTTGTCGAAGATAAT
TTCATATCGGAACAGCCGGGAATTTTGAAACGGATATCACGACTACATCA
GATAGTGTCTAGCGTTGATCCAACTCTGGCATCACATCTCACCAGCGTTG
AGGTAGAGTTTTTGCAATTCGCCTACAGATGGATGAACTGTTTGCTAATG
AGGGAGCTCCCACTTCCTTTAGTTGTCCATGTTTGGGATGCTTTGTTGGC
AGAAGATGACGGTGTTTCCGATTTGCTCGTATATCTGTGTGCTGCTCTCA
TGGTCCATTTCAGCGACGCGCTGTTGTCAATGGACTTCGAGGAAGCAATA
CTTTTCCTTCAGCACTTGCCGACAAAGGAGTGGACAGAAACTAACATTGA
CGAAATGCTGAGCCAGGCATACCAATGGAAAGAGACTCTAGGCCTCGAAA
GTCTTGCTCTTCCTCTGCCAAGGACTCCATCTGTTACTGATGTGAAAAGG
TATGCTCGAGTATCTTGA
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