|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 33188.XP_002541421.1 |
Preferred name | GYP1 |
PFAMs | RabGAP-TBC |
Max annot lvl | 4751|Fungi |
KEGG ko | ko:K20360 |
GOs | GO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005794,GO:0006810,GO:0006886,GO:0008047,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016192,GO:0017016,GO:0017137,GO:0019899,GO:0030234,GO:0030695,GO:0031267,GO:0031338,GO:0032879,GO:0033036,GO:0033043,GO:0034613,GO:0042886,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046907,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0060589,GO:0060627,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0090630,GO:0098772 |
Evalue | 3.36e-68 |
EggNOG OGs | KOG1092@1|root,KOG1092@2759|Eukaryota,38CKU@33154|Opisthokonta,3NWNR@4751|Fungi,3QP09@4890|Ascomycota,20BJ3@147545|Eurotiomycetes,3AZID@33183|Onygenales |
Description | GTPase activating protein |
COG category | U |
BRITE | ko00000,ko04131 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil10013.t1 ID=Gchil10013.t1|Name=Gchil10013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=506bp MAAEPVGEPKHVRPKDDEVAERGSDCRPCVYEHSHQNRSSFSSFLSNFIL GPTRRKWIAKKNSNDGNAEQADAFPKGGDQYESSVYLSEEKGSAVKTPRS KIDSRIPHVAFQSQKMDLLLLDEHPQIDLLKKTAWNGCSSKNRAQIWRLL LGYEPLEYNNRHIVLEAKRAKYREYVRLFCESDTCPDFRNFGRFDSSESQ CLKSEPLDLCEHSRHDPSLHDLGLCRLTESSSSTHFACRTLRQINLDLPR TRPDVPIFHLSQIRNIMRRVLFLHSMLHPGKSYVQGMNEILTPLVVVYVS NLIKVPSEKGVEDFLKRRALPSYVRERKLDAAEADIFWVFSQLVSFVEDN FISEQPGILKRISRLHQIVSSVDPTLASHLTSVEVEFLQFAYRWMNCLLM RELPLPLVVHVWDALLAEDDGVSDLLVYLCAALMVHFSDALLSMDFEEAI LFLQHLPTKEWTETNIDEMLSQAYQWKETLGLESLALPLPRTPSVTDVKR YARVS* back to topspliced messenger RNA >Gchil10013.t1 ID=Gchil10013.t1|Name=Gchil10013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1518bp|location=Sequence derived from alignment at tig00004442_pilon:253542..255059+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCCGCCGAGCCTGTCGGGGAACCGAAACACGTACGACCGAAGGATGA TGAAGTTGCCGAACGTGGAAGTGATTGTCGACCTTGTGTTTATGAGCATT CTCATCAAAACCGTAGCAGTTTTTCTTCATTTCTTTCGAACTTCATTCTT GGACCAACTCGGAGAAAGTGGATTGCAAAGAAGAATTCTAATGATGGCAA CGCAGAACAGGCTGATGCATTTCCGAAAGGAGGAGACCAATATGAATCGT CGGTTTATCTTTCAGAAGAAAAAGGTAGTGCCGTGAAAACTCCAAGAAGT AAAATTGATTCGAGAATACCTCATGTCGCTTTCCAATCTCAGAAAATGGA TTTGTTGTTACTTGATGAGCATCCCCAAATCGACCTCCTCAAGAAAACCG CTTGGAACGGATGCTCGTCCAAAAACAGAGCTCAAATTTGGCGTCTGTTG CTCGGATACGAGCCCTTGGAATATAACAATAGGCACATTGTACTAGAAGC AAAGCGAGCCAAATATCGGGAGTACGTAAGACTCTTTTGCGAATCAGATA CATGCCCAGATTTTCGCAACTTTGGCCGCTTCGACAGTAGCGAATCTCAA TGCCTTAAGAGCGAACCCCTTGATTTATGTGAACACAGTCGTCATGACCC TTCACTCCATGATCTAGGTCTCTGTCGATTAACAGAGTCGAGTAGTTCGA CACACTTTGCGTGCAGGACCCTTCGCCAGATTAATCTCGATTTACCACGG ACTCGTCCTGATGTACCAATCTTTCATTTATCGCAAATAAGGAATATAAT GCGAAGGGTTCTGTTCCTGCACAGCATGCTGCATCCAGGGAAAAGCTATG TTCAAGGTATGAACGAGATCCTAACACCACTAGTTGTTGTGTACGTCAGC AATCTGATCAAAGTTCCTAGCGAGAAAGGGGTCGAGGATTTCTTGAAGAG AAGAGCGCTGCCTTCGTATGTGAGGGAAAGGAAGTTGGATGCTGCAGAGG CGGATATTTTCTGGGTCTTTTCGCAACTAGTGTCATTTGTCGAAGATAAT TTCATATCGGAACAGCCGGGAATTTTGAAACGGATATCACGACTACATCA GATAGTGTCTAGCGTTGATCCAACTCTGGCATCACATCTCACCAGCGTTG AGGTAGAGTTTTTGCAATTCGCCTACAGATGGATGAACTGTTTGCTAATG AGGGAGCTCCCACTTCCTTTAGTTGTCCATGTTTGGGATGCTTTGTTGGC AGAAGATGACGGTGTTTCCGATTTGCTCGTATATCTGTGTGCTGCTCTCA TGGTCCATTTCAGCGACGCGCTGTTGTCAATGGACTTCGAGGAAGCAATA CTTTTCCTTCAGCACTTGCCGACAAAGGAGTGGACAGAAACTAACATTGA CGAAATGCTGAGCCAGGCATACCAATGGAAAGAGACTCTAGGCCTCGAAA GTCTTGCTCTTCCTCTGCCAAGGACTCCATCTGTTACTGATGTGAAAAGG TATGCTCGAGTATCTTGA back to topprotein sequence of Gchil10013.t1 >Gchil10013.t1 ID=Gchil10013.t1|Name=Gchil10013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=506bp
MAAEPVGEPKHVRPKDDEVAERGSDCRPCVYEHSHQNRSSFSSFLSNFIL GPTRRKWIAKKNSNDGNAEQADAFPKGGDQYESSVYLSEEKGSAVKTPRS KIDSRIPHVAFQSQKMDLLLLDEHPQIDLLKKTAWNGCSSKNRAQIWRLL LGYEPLEYNNRHIVLEAKRAKYREYVRLFCESDTCPDFRNFGRFDSSESQ CLKSEPLDLCEHSRHDPSLHDLGLCRLTESSSSTHFACRTLRQINLDLPR TRPDVPIFHLSQIRNIMRRVLFLHSMLHPGKSYVQGMNEILTPLVVVYVS NLIKVPSEKGVEDFLKRRALPSYVRERKLDAAEADIFWVFSQLVSFVEDN FISEQPGILKRISRLHQIVSSVDPTLASHLTSVEVEFLQFAYRWMNCLLM RELPLPLVVHVWDALLAEDDGVSDLLVYLCAALMVHFSDALLSMDFEEAI LFLQHLPTKEWTETNIDEMLSQAYQWKETLGLESLALPLPRTPSVTDVKR YARVS* back to topmRNA from alignment at tig00004442_pilon:253542..255059+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil10013.t1 ID=Gchil10013.t1|Name=Gchil10013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1518bp|location=Sequence derived from alignment at tig00004442_pilon:253542..255059+ (Gracilaria chilensis NLEC103_M9 male) ATGGCCGCCGAGCCTGTCGGGGAACCGAAACACGTACGACCGAAGGATGA
TGAAGTTGCCGAACGTGGAAGTGATTGTCGACCTTGTGTTTATGAGCATT
CTCATCAAAACCGTAGCAGTTTTTCTTCATTTCTTTCGAACTTCATTCTT
GGACCAACTCGGAGAAAGTGGATTGCAAAGAAGAATTCTAATGATGGCAA
CGCAGAACAGGCTGATGCATTTCCGAAAGGAGGAGACCAATATGAATCGT
CGGTTTATCTTTCAGAAGAAAAAGGTAGTGCCGTGAAAACTCCAAGAAGT
AAAATTGATTCGAGAATACCTCATGTCGCTTTCCAATCTCAGAAAATGGA
TTTGTTGTTACTTGATGAGCATCCCCAAATCGACCTCCTCAAGAAAACCG
CTTGGAACGGATGCTCGTCCAAAAACAGAGCTCAAATTTGGCGTCTGTTG
CTCGGATACGAGCCCTTGGAATATAACAATAGGCACATTGTACTAGAAGC
AAAGCGAGCCAAATATCGGGAGTACGTAAGACTCTTTTGCGAATCAGATA
CATGCCCAGATTTTCGCAACTTTGGCCGCTTCGACAGTAGCGAATCTCAA
TGCCTTAAGAGCGAACCCCTTGATTTATGTGAACACAGTCGTCATGACCC
TTCACTCCATGATCTAGGTCTCTGTCGATTAACAGAGTCGAGTAGTTCGA
CACACTTTGCGTGCAGGACCCTTCGCCAGATTAATCTCGATTTACCACGG
ACTCGTCCTGATGTACCAATCTTTCATTTATCGCAAATAAGGAATATAAT
GCGAAGGGTTCTGTTCCTGCACAGCATGCTGCATCCAGGGAAAAGCTATG
TTCAAGGTATGAACGAGATCCTAACACCACTAGTTGTTGTGTACGTCAGC
AATCTGATCAAAGTTCCTAGCGAGAAAGGGGTCGAGGATTTCTTGAAGAG
AAGAGCGCTGCCTTCGTATGTGAGGGAAAGGAAGTTGGATGCTGCAGAGG
CGGATATTTTCTGGGTCTTTTCGCAACTAGTGTCATTTGTCGAAGATAAT
TTCATATCGGAACAGCCGGGAATTTTGAAACGGATATCACGACTACATCA
GATAGTGTCTAGCGTTGATCCAACTCTGGCATCACATCTCACCAGCGTTG
AGGTAGAGTTTTTGCAATTCGCCTACAGATGGATGAACTGTTTGCTAATG
AGGGAGCTCCCACTTCCTTTAGTTGTCCATGTTTGGGATGCTTTGTTGGC
AGAAGATGACGGTGTTTCCGATTTGCTCGTATATCTGTGTGCTGCTCTCA
TGGTCCATTTCAGCGACGCGCTGTTGTCAATGGACTTCGAGGAAGCAATA
CTTTTCCTTCAGCACTTGCCGACAAAGGAGTGGACAGAAACTAACATTGA
CGAAATGCTGAGCCAGGCATACCAATGGAAAGAGACTCTAGGCCTCGAAA
GTCTTGCTCTTCCTCTGCCAAGGACTCCATCTGTTACTGATGTGAAAAGG
TATGCTCGAGTATCTTGA back to topCoding sequence (CDS) from alignment at tig00004442_pilon:253542..255059+ >Gchil10013.t1 ID=Gchil10013.t1|Name=Gchil10013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1518bp|location=Sequence derived from alignment at tig00004442_pilon:253542..255059+ (Gracilaria chilensis NLEC103_M9 male) ATGGCCGCCGAGCCTGTCGGGGAACCGAAACACGTACGACCGAAGGATGA TGAAGTTGCCGAACGTGGAAGTGATTGTCGACCTTGTGTTTATGAGCATT CTCATCAAAACCGTAGCAGTTTTTCTTCATTTCTTTCGAACTTCATTCTT GGACCAACTCGGAGAAAGTGGATTGCAAAGAAGAATTCTAATGATGGCAA CGCAGAACAGGCTGATGCATTTCCGAAAGGAGGAGACCAATATGAATCGT CGGTTTATCTTTCAGAAGAAAAAGGTAGTGCCGTGAAAACTCCAAGAAGT AAAATTGATTCGAGAATACCTCATGTCGCTTTCCAATCTCAGAAAATGGA TTTGTTGTTACTTGATGAGCATCCCCAAATCGACCTCCTCAAGAAAACCG CTTGGAACGGATGCTCGTCCAAAAACAGAGCTCAAATTTGGCGTCTGTTG CTCGGATACGAGCCCTTGGAATATAACAATAGGCACATTGTACTAGAAGC AAAGCGAGCCAAATATCGGGAGTACGTAAGACTCTTTTGCGAATCAGATA CATGCCCAGATTTTCGCAACTTTGGCCGCTTCGACAGTAGCGAATCTCAA TGCCTTAAGAGCGAACCCCTTGATTTATGTGAACACAGTCGTCATGACCC TTCACTCCATGATCTAGGTCTCTGTCGATTAACAGAGTCGAGTAGTTCGA CACACTTTGCGTGCAGGACCCTTCGCCAGATTAATCTCGATTTACCACGG ACTCGTCCTGATGTACCAATCTTTCATTTATCGCAAATAAGGAATATAAT GCGAAGGGTTCTGTTCCTGCACAGCATGCTGCATCCAGGGAAAAGCTATG TTCAAGGTATGAACGAGATCCTAACACCACTAGTTGTTGTGTACGTCAGC AATCTGATCAAAGTTCCTAGCGAGAAAGGGGTCGAGGATTTCTTGAAGAG AAGAGCGCTGCCTTCGTATGTGAGGGAAAGGAAGTTGGATGCTGCAGAGG CGGATATTTTCTGGGTCTTTTCGCAACTAGTGTCATTTGTCGAAGATAAT TTCATATCGGAACAGCCGGGAATTTTGAAACGGATATCACGACTACATCA GATAGTGTCTAGCGTTGATCCAACTCTGGCATCACATCTCACCAGCGTTG AGGTAGAGTTTTTGCAATTCGCCTACAGATGGATGAACTGTTTGCTAATG AGGGAGCTCCCACTTCCTTTAGTTGTCCATGTTTGGGATGCTTTGTTGGC AGAAGATGACGGTGTTTCCGATTTGCTCGTATATCTGTGTGCTGCTCTCA TGGTCCATTTCAGCGACGCGCTGTTGTCAATGGACTTCGAGGAAGCAATA CTTTTCCTTCAGCACTTGCCGACAAAGGAGTGGACAGAAACTAACATTGA CGAAATGCTGAGCCAGGCATACCAATGGAAAGAGACTCTAGGCCTCGAAA GTCTTGCTCTTCCTCTGCCAAGGACTCCATCTGTTACTGATGTGAAAAGG TATGCTCGAGTATCTTGA back to top
|