|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 6087.XP_004206016.1 |
Preferred name | TUBGCP4 |
PFAMs | Spc97_Spc98 |
Max annot lvl | 33208|Metazoa |
KEGG ko | ko:K16571 |
GOs | GO:0000003,GO:0000212,GO:0000226,GO:0000278,GO:0000280,GO:0000578,GO:0000910,GO:0000923,GO:0000930,GO:0000931,GO:0003002,GO:0003006,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006403,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0007056,GO:0007058,GO:0007098,GO:0007112,GO:0007135,GO:0007140,GO:0007143,GO:0007147,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007350,GO:0007351,GO:0007389,GO:0008092,GO:0008150,GO:0008274,GO:0008298,GO:0008358,GO:0008595,GO:0009790,GO:0009798,GO:0009880,GO:0009948,GO:0009952,GO:0009987,GO:0009994,GO:0012505,GO:0015630,GO:0015631,GO:0016043,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0031023,GO:0031109,GO:0031122,GO:0031410,GO:0031982,GO:0032153,GO:0032155,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033206,GO:0034622,GO:0035282,GO:0043015,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044703,GO:0045450,GO:0046785,GO:0048232,GO:0048285,GO:0048468,GO:0048469,GO:0048477,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0051179,GO:0051225,GO:0051258,GO:0051298,GO:0051301,GO:0051321,GO:0051415,GO:0051418,GO:0051641,GO:0051704,GO:0055037,GO:0060810,GO:0060811,GO:0061640,GO:0061983,GO:0065003,GO:0070727,GO:0070925,GO:0071840,GO:0090306,GO:0090307,GO:0097435,GO:0097708,GO:0140013,GO:0140014,GO:1902850,GO:1903046,GO:1903047 |
Evalue | 2.94e-05 |
EggNOG OGs | KOG2065@1|root,KOG2065@2759|Eukaryota,39RDF@33154|Opisthokonta,3B9D7@33208|Metazoa |
Description | microtubule nucleation by interphase microtubule organizing center |
COG category | Z |
BRITE | ko00000,ko03036,ko04812 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil10008.t1 ID=Gchil10008.t1|Name=Gchil10008.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=483bp MLSHVWNDVITILRGQLFLLLVHARISDPHDEFFISPSSVVTSNLPSFVS FEAAENIYSAYRATKCAISLSDQDISCSIYPTDEFKNILSDPISAELQIE SAAMRWRRRASENISQVFPFPKIRERVQCLRKYLLHGESSFWRFFFDQLR NTSLPPLISAESRAHSEKYLNRILQTTVTEYGVACPLFDLRVLENGDVIP TFTLSFVESQILGSRAHVHCDLFSVTFSIRRAACELQSSYVELQAHRKRM PDKGLSQRAKWFVELFELRRRMACFIDGYEWYIQAQVLQPNIDGFLLSLK GHGSASSDVKRRALFDVVVKHHEDTMERILTQCFVGEKLIMARLQAIACA CLNLGGVIRNLPKDALECKVESRDSEVLEVVKSIEKEFNRNHELLAKMLA GLRKRGYGSQVVVLQQIVLDCSVRKVELSVPWIQAKQRLTVTGAHLHTRS RPIFEVCPQWRQLSAAWSVLIKRKAHFVRPQC* back to topspliced messenger RNA >Gchil10008.t1 ID=Gchil10008.t1|Name=Gchil10008.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00004442_pilon:237063..239577+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCTCAGTCATGTGTGGAATGACGTGATTACGATTTTGAGAGGCCAATT ATTCCTTTTGCTGGTTCATGCTCGAATATCTGACCCTCATGATGAGTTTT TTATCTCTCCATCTTCAGTCGTCACATCCAATCTACCTTCGTTTGTATCA TTCGAGGCCGCCGAGAACATATATTCAGCCTACAGAGCCACAAAGTGTGC TATTTCATTGTCAGATCAAGACATTTCCTGCTCAATATACCCAACAGATG AATTCAAGAATATCTTGTCTGACCCCATCTCTGCAGAGCTTCAGATAGAA TCAGCTGCGATGCGATGGCGTCGAAGGGCATCAGAAAATATTTCGCAAGT GTTCCCGTTTCCAAAAATCAGGGAACGAGTTCAATGTCTTCGGAAATATT TGCTACATGGCGAATCTTCGTTCTGGCGGTTTTTCTTTGATCAATTGAGG AACACTTCTCTGCCTCCATTGATTTCGGCAGAGTCCCGGGCACACTCGGA GAAGTATCTCAACAGAATACTACAGACGACTGTAACGGAGTATGGAGTGG CTTGTCCATTGTTTGACCTTCGAGTTCTTGAAAATGGGGATGTAATTCCG ACTTTCACCCTTTCATTCGTCGAAAGCCAAATTCTTGGGTCACGGGCTCA TGTGCACTGTGACTTGTTTTCTGTAACGTTTTCAATTCGACGGGCTGCGT GCGAGCTTCAATCCAGTTATGTTGAGCTGCAAGCGCATAGAAAAAGGATG CCAGACAAAGGGCTGTCCCAGAGAGCAAAATGGTTTGTCGAGCTATTTGA ACTACGGCGACGAATGGCGTGCTTTATTGATGGGTATGAGTGGTACATTC AGGCACAGGTTTTGCAGCCAAACATCGATGGGTTTTTGCTCAGCCTGAAG GGGCATGGATCGGCCAGTTCAGATGTCAAGAGAAGGGCACTGTTTGATGT TGTGGTCAAGCATCATGAAGACACGATGGAAAGGATTTTGACGCAATGCT TTGTCGGAGAGAAATTGATCATGGCTCGGCTTCAAGCAATTGCATGTGCC TGTTTAAATCTTGGCGGAGTAATTCGCAACCTTCCGAAGGACGCGCTTGA GTGCAAGGTGGAATCAAGAGATTCAGAAGTGCTCGAAGTAGTTAAAAGCA TCGAGAAGGAATTCAATCGTAATCATGAGCTACTGGCAAAAATGCTAGCT GGATTGCGAAAACGCGGATATGGATCGCAAGTTGTGGTTCTTCAGCAGAT AGTCTTGGATTGTTCGGTTCGCAAGGTAGAACTATCTGTCCCCTGGATTC AAGCCAAGCAGAGGCTTACAGTGACCGGCGCGCACCTGCATACGCGGTCG CGACCTATCTTCGAAGTTTGTCCTCAATGGCGGCAGCTGTCGGCAGCTTG GTCTGTTTTAATCAAGCGTAAAGCTCATTTCGTCCGACCGCAGTGTTAA back to topprotein sequence of Gchil10008.t1 >Gchil10008.t1 ID=Gchil10008.t1|Name=Gchil10008.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=483bp
MLSHVWNDVITILRGQLFLLLVHARISDPHDEFFISPSSVVTSNLPSFVS FEAAENIYSAYRATKCAISLSDQDISCSIYPTDEFKNILSDPISAELQIE SAAMRWRRRASENISQVFPFPKIRERVQCLRKYLLHGESSFWRFFFDQLR NTSLPPLISAESRAHSEKYLNRILQTTVTEYGVACPLFDLRVLENGDVIP TFTLSFVESQILGSRAHVHCDLFSVTFSIRRAACELQSSYVELQAHRKRM PDKGLSQRAKWFVELFELRRRMACFIDGYEWYIQAQVLQPNIDGFLLSLK GHGSASSDVKRRALFDVVVKHHEDTMERILTQCFVGEKLIMARLQAIACA CLNLGGVIRNLPKDALECKVESRDSEVLEVVKSIEKEFNRNHELLAKMLA GLRKRGYGSQVVVLQQIVLDCSVRKVELSVPWIQAKQRLTVTGAHLHTRS RPIFEVCPQWRQLSAAWSVLIKRKAHFVRPQC* back to topmRNA from alignment at tig00004442_pilon:237063..239577+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil10008.t1 ID=Gchil10008.t1|Name=Gchil10008.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2515bp|location=Sequence derived from alignment at tig00004442_pilon:237063..239577+ (Gracilaria chilensis NLEC103_M9 male) ATGCTCAGTCATGTGTGGAATGACGTGATTACGATTTTGAGAGGCCAATT
ATTCCTTTTGCTGGTTCATGCTCGAATATCTGACCCTCATGATGAGTTTT
TTATCTCTCCATCTTCAGTCGTCACATCCAATCTACCTTCGTTTGTATCA
TTCGAGGCCGCCGAGAACATATATTCAGCCTACAGAGCCACAAAGTGTGC
TATTTCATTGTCAGATCAAGACATTTCCTGCTCAATATACCCAACAGATG
AATTCAAGAATATCTTGTCTGACCCCATCTCTGCAGAGCTTCAGATAGAA
TCAGCTGCGATGCGATGGCGTCGAAGGGCATCAGAAAATATTTCGCAAGT
GTTCCCGTTTCCAAAAATCAGGGAACGAGTTCAATGTCTTCGGAAATATT
TGCTACATGGCGAATCTTCGTTCTGGCGGTTTTTCTTTGATCAATTGAGG
AACACTTCTCTGCCTCCATTGATTTCGGCAGAGTCCCGGGCACACTCGGA
GAAGTATCTCAACAGAATACTACAGACGACTGTAACGGAGTATGGAGTGG
CTTGTCCATTGTTTGACCTTCGAGTTCTTGAAAATGGGGATGTAATTCCG
ACTTTCACCCTTTCATTCGTCGAAAGCCAAATTCTTGGGTCACGGGCTCA
TGTGCACTGTGACTTGTTTTCTGTAACGTTTTCAATTCGACGGGCTGCGT
GCGAGCTTCAATCCAGTTATGTTGAGCTGCAAGCGCATAGAAAAAGGATG
CCAGACAAAGGGCTGTCCCAGAGAGCAAAATGGTTTGTCGAGCTATTTGA
ACTACGGCGACGAATGGCGTGCTTTATTGATGGGTATGAGTGGTACATTC
AGGCACAGGTTTTGCAGCCAAACATCGATGGGTTTTTGCTCAGCCTGAAG
GGGCATGGATCGGCCAGTTCAGATGTCAAGAGAAGGGCACTGTTTGATGT
TGTGGTCAAGCATCATGAAGACACGATGGAAAGGATTTTGACGCAATGCT
TTGTCGGAGAGAAATTGATCATGGCTCGGCTTCAAGCAATTGCATGTGCC
TGTTTAAATCTTGGCGGAGTAATTCGCAACCTTCCGAAGGACGCGCTTGA
GTGCAAGGTGGAATCAAGAGATTCAGAAGTGCTCGAAGTAGTTAAAAGCA
TCGAGAAGGAATTCAATCGTAATCATGAGCTACTGGCAAAAATGCTAGCT
GGATTGCGAAAACGCGGATATGGATCGCAAGTTGTGGTTCTTCAGCAGAT
AGTCTTGGATTGTTCGGTTCGCAAGGGTTAGCAGTACAGGGATGATGAAG
AACTGCAAACCGCCAAACCCTCTAAGAGCCTACATAGCTCACAAGCTTTT
TTTTTCTACGACCTGGCCTGATGCAGACGAGCTTGGACACTGTTTGACAA
CTTGATTGCGTAACTTGGGATAGCGTGGGAGGCCAGGTAGCCATCCGCTA
AAGGCTCGCACGTCATGGGAAGCGTTCATTGAGAGGGAAACAGTAGTCAG
AGCGCGAAGCGTTGGGCAGAGAGGGAGACGCCCATTAACGCGCCAAGCAA
AACGCGCCAGACCAAAAAATTACGAGAAAATGGGCCTTGTTTGACTAGGA
CACGTGGAAGAAGTGCGATGCGGCTAATGCACCAGTGGAGAGGCGTTTTC
GGAGCGGTGGCGGGCGCTTCCAATTCGAATCCGCCGGCGGCGGCCGGTGT
GCGTCGCGCCCTCCACCGTTCGTGGCGCAAAGATTCGCGCAAACGCTTGG
AACCTAGCACCGAACTCTCCACCACCTCTGCGTTTGTGATCCTCGCGCAC
CCCAAACTTGTCGGAGGCGACGTCAAAGGCTTGCTACCTTACCCTACTCT
CACGTTCCTCCCCCCGAGCGCGCTTTTGCGGCTCGCGCATCTTCATTCTA
CGACCCGCGCTTTTCGTGCTGCTTTTCTACGTTTGCCGCCATATTCGTGC
AAGCCAGGCGCGGTTACGCATCCTTTTTTTTTTCAAGTCTCGTGCACGTC
CCCTCCACCTTCATACATCCCTTTTCCGTACACGCTTTCTTCGTTCTAAA
ACAAGAGTAGAACTATCTGTCCCCTGGATTCAAGCCAAGCAGAGGCTTAC
AGTGACCGGCGCGCACCTGCATACGCGGTCGCGACCTATCTTCGAAGTTT
GTCCTCAATGGCGGCAGCTGTCGGCAGCTTGGTCTGTTTTAATCAAGCGT
AAAGCTCATTTCGTCCGACCGGTACGTTGTTCAACACTCTGGAATATGCG
AGGTCTTTATGCTTTGTTTTACGTTGTTTCACGTACCTTCGTTGCTCTCT
CGCATACCCTTGCAATTCGCAAAACACTTGTTTTTGAATTCGATTTTCCC
GCCATTCATTTTCTAACTATCTTGTGTTGTCTTTTATCTTGCTGTAACCT
ACTTCCCCTTCGTCTATACTTGTTCTGTTGTGTGCGCCTTCCATCTTTCA
ATCTCCGTCTTCGTCTCTTTTGTATTTGAACGCTGCTTACCTGTGGATAT
GAGCAGCAGTGTTAA back to topCoding sequence (CDS) from alignment at tig00004442_pilon:237063..239577+ >Gchil10008.t1 ID=Gchil10008.t1|Name=Gchil10008.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1449bp|location=Sequence derived from alignment at tig00004442_pilon:237063..239577+ (Gracilaria chilensis NLEC103_M9 male) ATGCTCAGTCATGTGTGGAATGACGTGATTACGATTTTGAGAGGCCAATT ATTCCTTTTGCTGGTTCATGCTCGAATATCTGACCCTCATGATGAGTTTT TTATCTCTCCATCTTCAGTCGTCACATCCAATCTACCTTCGTTTGTATCA TTCGAGGCCGCCGAGAACATATATTCAGCCTACAGAGCCACAAAGTGTGC TATTTCATTGTCAGATCAAGACATTTCCTGCTCAATATACCCAACAGATG AATTCAAGAATATCTTGTCTGACCCCATCTCTGCAGAGCTTCAGATAGAA TCAGCTGCGATGCGATGGCGTCGAAGGGCATCAGAAAATATTTCGCAAGT GTTCCCGTTTCCAAAAATCAGGGAACGAGTTCAATGTCTTCGGAAATATT TGCTACATGGCGAATCTTCGTTCTGGCGGTTTTTCTTTGATCAATTGAGG AACACTTCTCTGCCTCCATTGATTTCGGCAGAGTCCCGGGCACACTCGGA GAAGTATCTCAACAGAATACTACAGACGACTGTAACGGAGTATGGAGTGG CTTGTCCATTGTTTGACCTTCGAGTTCTTGAAAATGGGGATGTAATTCCG ACTTTCACCCTTTCATTCGTCGAAAGCCAAATTCTTGGGTCACGGGCTCA TGTGCACTGTGACTTGTTTTCTGTAACGTTTTCAATTCGACGGGCTGCGT GCGAGCTTCAATCCAGTTATGTTGAGCTGCAAGCGCATAGAAAAAGGATG CCAGACAAAGGGCTGTCCCAGAGAGCAAAATGGTTTGTCGAGCTATTTGA ACTACGGCGACGAATGGCGTGCTTTATTGATGGGTATGAGTGGTACATTC AGGCACAGGTTTTGCAGCCAAACATCGATGGGTTTTTGCTCAGCCTGAAG GGGCATGGATCGGCCAGTTCAGATGTCAAGAGAAGGGCACTGTTTGATGT TGTGGTCAAGCATCATGAAGACACGATGGAAAGGATTTTGACGCAATGCT TTGTCGGAGAGAAATTGATCATGGCTCGGCTTCAAGCAATTGCATGTGCC TGTTTAAATCTTGGCGGAGTAATTCGCAACCTTCCGAAGGACGCGCTTGA GTGCAAGGTGGAATCAAGAGATTCAGAAGTGCTCGAAGTAGTTAAAAGCA TCGAGAAGGAATTCAATCGTAATCATGAGCTACTGGCAAAAATGCTAGCT GGATTGCGAAAACGCGGATATGGATCGCAAGTTGTGGTTCTTCAGCAGAT AGTCTTGGATTGTTCGGTTCGCAAGGTAGAACTATCTGTCCCCTGGATTC AAGCCAAGCAGAGGCTTACAGTGACCGGCGCGCACCTGCATACGCGGTCG CGACCTATCTTCGAAGTTTGTCCTCAATGGCGGCAGCTGTCGGCAGCTTG GTCTGTTTTAATCAAGCGTAAAGCTCATTTCGTCCGACCGCAGTGTTAA back to top
|