Gchil10008.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil10008.t1
Unique NameGchil10008.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length483
Homology
BLAST of Gchil10008.t1 vs. uniprot
Match: A0A2V3IGS5_9FLOR (Spindle pole body component n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGS5_9FLOR)

HSP 1 Score: 455 bits (1170), Expect = 1.030e-152
Identity = 233/426 (54.69%), Postives = 305/426 (71.60%), Query Frame = 0
Query:    2 LSHVWNDVITILRGQLFLLLVHARISDPHDEFFISPSSVVTSNLPSFVSFEAAENIYSAYRATKCAISLSDQDISCSIYPTDEFKNILSDPISAELQIESAAMRWRRRASENISQVFPFPKIRERVQCLRKYLLHGESSFWRFFFDQLRNTSLPPLISAESRAHSEKYLNRILQTTVTEYGVACPLFDLRVLENGDVIPTFTLSFVESQILGSRAHVHCDLFSVTFSIRRAACELQSSYVELQAHRKRMPDKGLSQRAKWFVELFELRRRMACFIDGYEWYIQAQVLQPNIDGFLLSLKGHGSASSDVKRRALFDVVVKHHEDTMERILTQCFVGEKLIMARLQAIACACLNLGGVIRNLPKDALECKVESR-----DSEVLEV-VKSIEKEFNRNHELLAKMLAGLRKRGYGSQV-VVLQQIVLD 420
            L+ VWND+++ILR  LFLLLVHARISDP+ EFFI  SSV T+NLPSF+S  AAENI  AY+ TKC + LS Q+    IYPTDEF  + SDP+S+ LQ ESAA+RWRR AS+ +S+VFPF +IR+R+  LRKYLLHGE SFWRF+FD LR+T  P   SAE R H+EK LNR LQTT+TEYG+  PLF+L+V ENGD++PTFTLS+VESQ+L S+AHV+CDLFSVTFSIRRAACELQS+++EL + RK++       + +  V++ ELRRRM CFID YE Y+Q  VLQP  D  L  +       S  KR + F+ +V HHE TM+ +  QCFVGEK +MAR+Q I  +CL+LG ++R L  D   C +        +SE + + ++ IE  F RN ELL ++L+ + +R   S+V V+LQQ++ +
Sbjct:  123 LNRVWNDMVSILREHLFLLLVHARISDPNKEFFIDSSSVETTNLPSFISLRAAENILCAYKTTKCTLLLSGQETQLPIYPTDEFNRMFSDPVSSSLQAESAALRWRREASDRLSKVFPFNEIRDRITRLRKYLLHGEPSFWRFYFDLLRSTPFPSHASAEYRTHAEKILNRTLQTTITEYGINVPLFELQVGENGDLVPTFTLSYVESQVLASKAHVYCDLFSVTFSIRRAACELQSTFLELLSIRKQIVASRQLLKVEGLVKIVELRRRMGCFIDAYERYLQYHVLQPGFDKILHYIASTPDKRSGSKRESFFEAIVGHHEQTMDNLFAQCFVGEKRVMARVQGIVSSCLHLGEMVRKL-SDVFTCSLGKETGSIWNSEDMALQIEQIEVGFERNFELLVRVLSNIERRTADSKVAVLLQQMIYN 547          
BLAST of Gchil10008.t1 vs. uniprot
Match: R7Q7H6_CHOCR (Spindle pole body component n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7H6_CHOCR)

HSP 1 Score: 270 bits (690), Expect = 7.050e-80
Identity = 163/450 (36.22%), Postives = 251/450 (55.78%), Query Frame = 0
Query:    2 LSHVWNDVITILRGQLFLLLVHARISDPHDEFFISPSS---VVTSNLPSFVSFEAAENIYSAYRATKCAISLSDQDISCSIYPTDEFKNI------LSDPISAELQIESAAMRWRRRASENISQVFPFPKIRERVQCLRKYLLHGESSFWRFFFDQLRNTSLPPLISAES-----RAHSEKYLNRILQTTVTEY-------GVACPLFD----LRVLENGDVIPTFTLSFVESQILGSRAHVHCDLFSVTFSIRRAACELQSSY--VELQAH--RKRMPDKGLSQRAKWFVELFELRRRMACFIDGYEWYIQAQVLQPNIDGFLLSLKGH--GSASSDVKRRALFDVVVKHHEDTMERILTQCFVGEKLIMARLQAIACACLNLGGVIRNLPKDALECKVESRDSEVLEVVKSIEKEFNRNHELLAKMLAGLRKRGYGSQVVVLQQIVLD 420
            LS +WND++ +LR  +      A + DP  +FFIS  S   VV + LP F+S   A  +       KC I ++ +       P D   NI      L++PISAEL+IE+A+ RWR  A+E +SQ+ PF +IR R+  LR+YLL G+S+FWR FFD+LR  + P L+++       R H E+ ++ IL  T  ++           P +D    L V   GD++P FTL F ES++L S+A V+CD+F++ F++RR  CEL+ +Y  ++L  H  +K    K   +R    V   ELRRRMA F+ G+EWY+Q +VLQP I+  L  L  H   +      R+  FDV+   HE  M+ I +QCFVG+  I ARL  I  +C +L   ++ L  DAL+       +   + +++ E+ F+RN  LL ++L+ +R+ G    V+ ++ +V++
Sbjct:  195 LSKIWNDLVVLLRSHIHQWFTAAIVEDPLHQFFISEESEPAVVPARLPQFISPAVANRLLFVGNVRKCRIVIAKERRE----PLDNPGNIGALGEILTNPISAELEIEAASFRWREEAAERLSQMLPFRRIRNRIILLRQYLLLGDSAFWRSFFDELR--AKPSLLTSRDLEPRERQHVERSISEILSYTFDDFVNENAALAEKSPHWDSILKLHVTAAGDIVPQFTLGFAESRVLASKASVYCDVFAIAFNVRRVGCELRDTYANIKLLEHQLKKSSSLKIRRERTACLVRTRELRRRMAIFLGGFEWYLQVEVLQPKINRLLTLLDNHLRENTQPSPPRKPFFDVIYSTHEALMDDIFSQCFVGQSQINARLNGIFASCFSLSDFVQGLTVDALQ------QNSFTDTLRAFEQSFSRNVGLLVRLLSHMRQNGNDECVIRVRLVVIE 632          
The following BLAST results are available for this feature:
BLAST of Gchil10008.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IGS5_9FLOR1.030e-15254.69Spindle pole body component n=1 Tax=Gracilariopsis... [more]
R7Q7H6_CHOCR7.050e-8036.22Spindle pole body component n=1 Tax=Chondrus crisp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042241Gamma-tubulin complex component, C-terminal domain superfamilyGENE3D1.20.120.1900coord: 124..420
e-value: 9.7E-25
score: 89.3
IPR040457Gamma tubulin complex component, C-terminalPFAMPF04130GCP_C_terminalcoord: 222..405
e-value: 1.6E-15
score: 57.3
IPR007259Gamma-tubulin complex component proteinPANTHERPTHR19302GAMMA TUBULIN COMPLEX PROTEINcoord: 16..402
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..482
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:237063..239577 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10008.t1Gchil10008.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004442_pilon 237063..239577 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil10008.t1 ID=Gchil10008.t1|Name=Gchil10008.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=483bp
MLSHVWNDVITILRGQLFLLLVHARISDPHDEFFISPSSVVTSNLPSFVS
FEAAENIYSAYRATKCAISLSDQDISCSIYPTDEFKNILSDPISAELQIE
SAAMRWRRRASENISQVFPFPKIRERVQCLRKYLLHGESSFWRFFFDQLR
NTSLPPLISAESRAHSEKYLNRILQTTVTEYGVACPLFDLRVLENGDVIP
TFTLSFVESQILGSRAHVHCDLFSVTFSIRRAACELQSSYVELQAHRKRM
PDKGLSQRAKWFVELFELRRRMACFIDGYEWYIQAQVLQPNIDGFLLSLK
GHGSASSDVKRRALFDVVVKHHEDTMERILTQCFVGEKLIMARLQAIACA
CLNLGGVIRNLPKDALECKVESRDSEVLEVVKSIEKEFNRNHELLAKMLA
GLRKRGYGSQVVVLQQIVLDCSVRKVELSVPWIQAKQRLTVTGAHLHTRS
RPIFEVCPQWRQLSAAWSVLIKRKAHFVRPQC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR042241GCP_C_sf
IPR040457GCP_C
IPR007259GCP