Gchil10008.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10008.t1
Unique NameGchil10008.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length483
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:237063..239577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6087.XP_004206016.1
Preferred nameTUBGCP4
PFAMsSpc97_Spc98
Max annot lvl33208|Metazoa
KEGG koko:K16571
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000278,GO:0000280,GO:0000578,GO:0000910,GO:0000923,GO:0000930,GO:0000931,GO:0003002,GO:0003006,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006403,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0007056,GO:0007058,GO:0007098,GO:0007112,GO:0007135,GO:0007140,GO:0007143,GO:0007147,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007350,GO:0007351,GO:0007389,GO:0008092,GO:0008150,GO:0008274,GO:0008298,GO:0008358,GO:0008595,GO:0009790,GO:0009798,GO:0009880,GO:0009948,GO:0009952,GO:0009987,GO:0009994,GO:0012505,GO:0015630,GO:0015631,GO:0016043,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0031023,GO:0031109,GO:0031122,GO:0031410,GO:0031982,GO:0032153,GO:0032155,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033206,GO:0034622,GO:0035282,GO:0043015,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044703,GO:0045450,GO:0046785,GO:0048232,GO:0048285,GO:0048468,GO:0048469,GO:0048477,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0051179,GO:0051225,GO:0051258,GO:0051298,GO:0051301,GO:0051321,GO:0051415,GO:0051418,GO:0051641,GO:0051704,GO:0055037,GO:0060810,GO:0060811,GO:0061640,GO:0061983,GO:0065003,GO:0070727,GO:0070925,GO:0071840,GO:0090306,GO:0090307,GO:0097435,GO:0097708,GO:0140013,GO:0140014,GO:1902850,GO:1903046,GO:1903047
Evalue2.94e-05
EggNOG OGsKOG2065@1|root,KOG2065@2759|Eukaryota,39RDF@33154|Opisthokonta,3B9D7@33208|Metazoa
Descriptionmicrotubule nucleation by interphase microtubule organizing center
COG categoryZ
BRITEko00000,ko03036,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10008Gchil10008Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 237063..239577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10008.t1Gchil10008.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 237063..239577 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10008.t1.start1Gchil10008.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 237063..237065 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10008.t1.CDS1Gchil10008.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 237063..238338 +
Gchil10008.t1.CDS2Gchil10008.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 239120..239283 +
Gchil10008.t1.CDS3Gchil10008.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 239569..239577 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10008.t1.exon1Gchil10008.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 237063..238338 +
Gchil10008.t1.exon2Gchil10008.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 239120..239283 +
Gchil10008.t1.exon3Gchil10008.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 239569..239577 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10008.t1.intron1Gchil10008.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 238339..239119 +
Gchil10008.t1.intron2Gchil10008.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 239284..239568 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10008.t1.stop1Gchil10008.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 239575..239577 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10008.t1 ID=Gchil10008.t1|Name=Gchil10008.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=483bp
MLSHVWNDVITILRGQLFLLLVHARISDPHDEFFISPSSVVTSNLPSFVS
FEAAENIYSAYRATKCAISLSDQDISCSIYPTDEFKNILSDPISAELQIE
SAAMRWRRRASENISQVFPFPKIRERVQCLRKYLLHGESSFWRFFFDQLR
NTSLPPLISAESRAHSEKYLNRILQTTVTEYGVACPLFDLRVLENGDVIP
TFTLSFVESQILGSRAHVHCDLFSVTFSIRRAACELQSSYVELQAHRKRM
PDKGLSQRAKWFVELFELRRRMACFIDGYEWYIQAQVLQPNIDGFLLSLK
GHGSASSDVKRRALFDVVVKHHEDTMERILTQCFVGEKLIMARLQAIACA
CLNLGGVIRNLPKDALECKVESRDSEVLEVVKSIEKEFNRNHELLAKMLA
GLRKRGYGSQVVVLQQIVLDCSVRKVELSVPWIQAKQRLTVTGAHLHTRS
RPIFEVCPQWRQLSAAWSVLIKRKAHFVRPQC*
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spliced messenger RNA

>Gchil10008.t1 ID=Gchil10008.t1|Name=Gchil10008.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00004442_pilon:237063..239577+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAGTCATGTGTGGAATGACGTGATTACGATTTTGAGAGGCCAATT
ATTCCTTTTGCTGGTTCATGCTCGAATATCTGACCCTCATGATGAGTTTT
TTATCTCTCCATCTTCAGTCGTCACATCCAATCTACCTTCGTTTGTATCA
TTCGAGGCCGCCGAGAACATATATTCAGCCTACAGAGCCACAAAGTGTGC
TATTTCATTGTCAGATCAAGACATTTCCTGCTCAATATACCCAACAGATG
AATTCAAGAATATCTTGTCTGACCCCATCTCTGCAGAGCTTCAGATAGAA
TCAGCTGCGATGCGATGGCGTCGAAGGGCATCAGAAAATATTTCGCAAGT
GTTCCCGTTTCCAAAAATCAGGGAACGAGTTCAATGTCTTCGGAAATATT
TGCTACATGGCGAATCTTCGTTCTGGCGGTTTTTCTTTGATCAATTGAGG
AACACTTCTCTGCCTCCATTGATTTCGGCAGAGTCCCGGGCACACTCGGA
GAAGTATCTCAACAGAATACTACAGACGACTGTAACGGAGTATGGAGTGG
CTTGTCCATTGTTTGACCTTCGAGTTCTTGAAAATGGGGATGTAATTCCG
ACTTTCACCCTTTCATTCGTCGAAAGCCAAATTCTTGGGTCACGGGCTCA
TGTGCACTGTGACTTGTTTTCTGTAACGTTTTCAATTCGACGGGCTGCGT
GCGAGCTTCAATCCAGTTATGTTGAGCTGCAAGCGCATAGAAAAAGGATG
CCAGACAAAGGGCTGTCCCAGAGAGCAAAATGGTTTGTCGAGCTATTTGA
ACTACGGCGACGAATGGCGTGCTTTATTGATGGGTATGAGTGGTACATTC
AGGCACAGGTTTTGCAGCCAAACATCGATGGGTTTTTGCTCAGCCTGAAG
GGGCATGGATCGGCCAGTTCAGATGTCAAGAGAAGGGCACTGTTTGATGT
TGTGGTCAAGCATCATGAAGACACGATGGAAAGGATTTTGACGCAATGCT
TTGTCGGAGAGAAATTGATCATGGCTCGGCTTCAAGCAATTGCATGTGCC
TGTTTAAATCTTGGCGGAGTAATTCGCAACCTTCCGAAGGACGCGCTTGA
GTGCAAGGTGGAATCAAGAGATTCAGAAGTGCTCGAAGTAGTTAAAAGCA
TCGAGAAGGAATTCAATCGTAATCATGAGCTACTGGCAAAAATGCTAGCT
GGATTGCGAAAACGCGGATATGGATCGCAAGTTGTGGTTCTTCAGCAGAT
AGTCTTGGATTGTTCGGTTCGCAAGGTAGAACTATCTGTCCCCTGGATTC
AAGCCAAGCAGAGGCTTACAGTGACCGGCGCGCACCTGCATACGCGGTCG
CGACCTATCTTCGAAGTTTGTCCTCAATGGCGGCAGCTGTCGGCAGCTTG
GTCTGTTTTAATCAAGCGTAAAGCTCATTTCGTCCGACCGCAGTGTTAA
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protein sequence of Gchil10008.t1

>Gchil10008.t1 ID=Gchil10008.t1|Name=Gchil10008.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=483bp
MLSHVWNDVITILRGQLFLLLVHARISDPHDEFFISPSSVVTSNLPSFVS
FEAAENIYSAYRATKCAISLSDQDISCSIYPTDEFKNILSDPISAELQIE
SAAMRWRRRASENISQVFPFPKIRERVQCLRKYLLHGESSFWRFFFDQLR
NTSLPPLISAESRAHSEKYLNRILQTTVTEYGVACPLFDLRVLENGDVIP
TFTLSFVESQILGSRAHVHCDLFSVTFSIRRAACELQSSYVELQAHRKRM
PDKGLSQRAKWFVELFELRRRMACFIDGYEWYIQAQVLQPNIDGFLLSLK
GHGSASSDVKRRALFDVVVKHHEDTMERILTQCFVGEKLIMARLQAIACA
CLNLGGVIRNLPKDALECKVESRDSEVLEVVKSIEKEFNRNHELLAKMLA
GLRKRGYGSQVVVLQQIVLDCSVRKVELSVPWIQAKQRLTVTGAHLHTRS
RPIFEVCPQWRQLSAAWSVLIKRKAHFVRPQC*
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mRNA from alignment at tig00004442_pilon:237063..239577+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10008.t1 ID=Gchil10008.t1|Name=Gchil10008.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2515bp|location=Sequence derived from alignment at tig00004442_pilon:237063..239577+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCAGTCATGTGTGGAATGACGTGATTACGATTTTGAGAGGCCAATT
ATTCCTTTTGCTGGTTCATGCTCGAATATCTGACCCTCATGATGAGTTTT
TTATCTCTCCATCTTCAGTCGTCACATCCAATCTACCTTCGTTTGTATCA
TTCGAGGCCGCCGAGAACATATATTCAGCCTACAGAGCCACAAAGTGTGC
TATTTCATTGTCAGATCAAGACATTTCCTGCTCAATATACCCAACAGATG
AATTCAAGAATATCTTGTCTGACCCCATCTCTGCAGAGCTTCAGATAGAA
TCAGCTGCGATGCGATGGCGTCGAAGGGCATCAGAAAATATTTCGCAAGT
GTTCCCGTTTCCAAAAATCAGGGAACGAGTTCAATGTCTTCGGAAATATT
TGCTACATGGCGAATCTTCGTTCTGGCGGTTTTTCTTTGATCAATTGAGG
AACACTTCTCTGCCTCCATTGATTTCGGCAGAGTCCCGGGCACACTCGGA
GAAGTATCTCAACAGAATACTACAGACGACTGTAACGGAGTATGGAGTGG
CTTGTCCATTGTTTGACCTTCGAGTTCTTGAAAATGGGGATGTAATTCCG
ACTTTCACCCTTTCATTCGTCGAAAGCCAAATTCTTGGGTCACGGGCTCA
TGTGCACTGTGACTTGTTTTCTGTAACGTTTTCAATTCGACGGGCTGCGT
GCGAGCTTCAATCCAGTTATGTTGAGCTGCAAGCGCATAGAAAAAGGATG
CCAGACAAAGGGCTGTCCCAGAGAGCAAAATGGTTTGTCGAGCTATTTGA
ACTACGGCGACGAATGGCGTGCTTTATTGATGGGTATGAGTGGTACATTC
AGGCACAGGTTTTGCAGCCAAACATCGATGGGTTTTTGCTCAGCCTGAAG
GGGCATGGATCGGCCAGTTCAGATGTCAAGAGAAGGGCACTGTTTGATGT
TGTGGTCAAGCATCATGAAGACACGATGGAAAGGATTTTGACGCAATGCT
TTGTCGGAGAGAAATTGATCATGGCTCGGCTTCAAGCAATTGCATGTGCC
TGTTTAAATCTTGGCGGAGTAATTCGCAACCTTCCGAAGGACGCGCTTGA
GTGCAAGGTGGAATCAAGAGATTCAGAAGTGCTCGAAGTAGTTAAAAGCA
TCGAGAAGGAATTCAATCGTAATCATGAGCTACTGGCAAAAATGCTAGCT
GGATTGCGAAAACGCGGATATGGATCGCAAGTTGTGGTTCTTCAGCAGAT
AGTCTTGGATTGTTCGGTTCGCAAGGGTTAGCAGTACAGGGATGATGAAG
AACTGCAAACCGCCAAACCCTCTAAGAGCCTACATAGCTCACAAGCTTTT
TTTTTCTACGACCTGGCCTGATGCAGACGAGCTTGGACACTGTTTGACAA
CTTGATTGCGTAACTTGGGATAGCGTGGGAGGCCAGGTAGCCATCCGCTA
AAGGCTCGCACGTCATGGGAAGCGTTCATTGAGAGGGAAACAGTAGTCAG
AGCGCGAAGCGTTGGGCAGAGAGGGAGACGCCCATTAACGCGCCAAGCAA
AACGCGCCAGACCAAAAAATTACGAGAAAATGGGCCTTGTTTGACTAGGA
CACGTGGAAGAAGTGCGATGCGGCTAATGCACCAGTGGAGAGGCGTTTTC
GGAGCGGTGGCGGGCGCTTCCAATTCGAATCCGCCGGCGGCGGCCGGTGT
GCGTCGCGCCCTCCACCGTTCGTGGCGCAAAGATTCGCGCAAACGCTTGG
AACCTAGCACCGAACTCTCCACCACCTCTGCGTTTGTGATCCTCGCGCAC
CCCAAACTTGTCGGAGGCGACGTCAAAGGCTTGCTACCTTACCCTACTCT
CACGTTCCTCCCCCCGAGCGCGCTTTTGCGGCTCGCGCATCTTCATTCTA
CGACCCGCGCTTTTCGTGCTGCTTTTCTACGTTTGCCGCCATATTCGTGC
AAGCCAGGCGCGGTTACGCATCCTTTTTTTTTTCAAGTCTCGTGCACGTC
CCCTCCACCTTCATACATCCCTTTTCCGTACACGCTTTCTTCGTTCTAAA
ACAAGAGTAGAACTATCTGTCCCCTGGATTCAAGCCAAGCAGAGGCTTAC
AGTGACCGGCGCGCACCTGCATACGCGGTCGCGACCTATCTTCGAAGTTT
GTCCTCAATGGCGGCAGCTGTCGGCAGCTTGGTCTGTTTTAATCAAGCGT
AAAGCTCATTTCGTCCGACCGGTACGTTGTTCAACACTCTGGAATATGCG
AGGTCTTTATGCTTTGTTTTACGTTGTTTCACGTACCTTCGTTGCTCTCT
CGCATACCCTTGCAATTCGCAAAACACTTGTTTTTGAATTCGATTTTCCC
GCCATTCATTTTCTAACTATCTTGTGTTGTCTTTTATCTTGCTGTAACCT
ACTTCCCCTTCGTCTATACTTGTTCTGTTGTGTGCGCCTTCCATCTTTCA
ATCTCCGTCTTCGTCTCTTTTGTATTTGAACGCTGCTTACCTGTGGATAT
GAGCAGCAGTGTTAA
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Coding sequence (CDS) from alignment at tig00004442_pilon:237063..239577+

>Gchil10008.t1 ID=Gchil10008.t1|Name=Gchil10008.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1449bp|location=Sequence derived from alignment at tig00004442_pilon:237063..239577+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCAGTCATGTGTGGAATGACGTGATTACGATTTTGAGAGGCCAATT
ATTCCTTTTGCTGGTTCATGCTCGAATATCTGACCCTCATGATGAGTTTT
TTATCTCTCCATCTTCAGTCGTCACATCCAATCTACCTTCGTTTGTATCA
TTCGAGGCCGCCGAGAACATATATTCAGCCTACAGAGCCACAAAGTGTGC
TATTTCATTGTCAGATCAAGACATTTCCTGCTCAATATACCCAACAGATG
AATTCAAGAATATCTTGTCTGACCCCATCTCTGCAGAGCTTCAGATAGAA
TCAGCTGCGATGCGATGGCGTCGAAGGGCATCAGAAAATATTTCGCAAGT
GTTCCCGTTTCCAAAAATCAGGGAACGAGTTCAATGTCTTCGGAAATATT
TGCTACATGGCGAATCTTCGTTCTGGCGGTTTTTCTTTGATCAATTGAGG
AACACTTCTCTGCCTCCATTGATTTCGGCAGAGTCCCGGGCACACTCGGA
GAAGTATCTCAACAGAATACTACAGACGACTGTAACGGAGTATGGAGTGG
CTTGTCCATTGTTTGACCTTCGAGTTCTTGAAAATGGGGATGTAATTCCG
ACTTTCACCCTTTCATTCGTCGAAAGCCAAATTCTTGGGTCACGGGCTCA
TGTGCACTGTGACTTGTTTTCTGTAACGTTTTCAATTCGACGGGCTGCGT
GCGAGCTTCAATCCAGTTATGTTGAGCTGCAAGCGCATAGAAAAAGGATG
CCAGACAAAGGGCTGTCCCAGAGAGCAAAATGGTTTGTCGAGCTATTTGA
ACTACGGCGACGAATGGCGTGCTTTATTGATGGGTATGAGTGGTACATTC
AGGCACAGGTTTTGCAGCCAAACATCGATGGGTTTTTGCTCAGCCTGAAG
GGGCATGGATCGGCCAGTTCAGATGTCAAGAGAAGGGCACTGTTTGATGT
TGTGGTCAAGCATCATGAAGACACGATGGAAAGGATTTTGACGCAATGCT
TTGTCGGAGAGAAATTGATCATGGCTCGGCTTCAAGCAATTGCATGTGCC
TGTTTAAATCTTGGCGGAGTAATTCGCAACCTTCCGAAGGACGCGCTTGA
GTGCAAGGTGGAATCAAGAGATTCAGAAGTGCTCGAAGTAGTTAAAAGCA
TCGAGAAGGAATTCAATCGTAATCATGAGCTACTGGCAAAAATGCTAGCT
GGATTGCGAAAACGCGGATATGGATCGCAAGTTGTGGTTCTTCAGCAGAT
AGTCTTGGATTGTTCGGTTCGCAAGGTAGAACTATCTGTCCCCTGGATTC
AAGCCAAGCAGAGGCTTACAGTGACCGGCGCGCACCTGCATACGCGGTCG
CGACCTATCTTCGAAGTTTGTCCTCAATGGCGGCAGCTGTCGGCAGCTTG
GTCTGTTTTAATCAAGCGTAAAGCTCATTTCGTCCGACCGCAGTGTTAA
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