Gchil10006.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10006.t1
Unique NameGchil10006.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length711
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:229350..231482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4096.XP_009798773.1
PFAMsCASP_C
Max annot lvl35493|Streptophyta
KEGG koko:K09313
Evalue4.47e-59
EggNOG OGsKOG0963@1|root,KOG0963@2759|Eukaryota,37SEU@33090|Viridiplantae,3G7EH@35493|Streptophyta,44FKH@71274|asterids
DescriptionAtCASP,CASP
COG categoryK
BRITEko00000,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10006Gchil10006Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 229350..231482 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10006.t1.stop1Gchil10006.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 229350..229352 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10006.t1.CDS1Gchil10006.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 229350..231482 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10006.t1.exon1Gchil10006.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 229350..231482 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10006.t1.start1Gchil10006.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 231480..231482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10006.t1Gchil10006.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 229350..231482 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10006.t1 ID=Gchil10006.t1|Name=Gchil10006.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=711bp
MNNADGSHDISDSAPEEAQQQSPLEIWSQFDLNGRRGELDKHGLEIADRI
EQSQASRKQLTVATRALRASMAEGSTIPKKDYISLLKSYQTEVDSLTNRA
KFAETVFLSLYKDLYDAPDPVEELSRAYAAFLKIQELEKENEALKEQQGN
LIERNNVSTKYLEKISDLESEMAAMKNRFKEEAVAKIEEKQAEWMAEQQQ
TMEAYELREQELLHQLRLANDHTRRLQANSDEIRRQLNDTSSQLETMKSS
RANVSEMAVEDLERAHAEVKILRSRTNELENIVSDRQKGNVISGGTSIAR
SALSAELAARDVEVSQLRDQVAILEELLGGKDHEKSKEFAKLTDSIEEKD
KKLAELKEELARLPSLEEYQTMVRQFETLQSFQLMEAETSEEAAEPGESS
NGNPTSNATDSLERKLLEKAKVLEGKLTRMRVEIREKNSEINDLRTTVRS
NEDQIADQKSLISKLERSISAMTSDNVSSAVNRRKGSAILDRDIPDFANL
EKEGEEHEDSASAWEWGDRQQAESLRSIIREEPSMLDIVAGQRDRFRART
MELEEDNRKLMERIEKLTSDMDSLKNDNVCLYEKIRYLQSYQQSGGGAMS
TAGAPSSEAHHSINIGDDEDRGNFVGKYRSMYEDMVNPYTIFNRRERHKR
MSEMSAPERLTLRASQRALSTKTSRLIVFFYIISLHVLVALVLSFSPSSC
DQTVTTKAQH*
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spliced messenger RNA

>Gchil10006.t1 ID=Gchil10006.t1|Name=Gchil10006.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2133bp|location=Sequence derived from alignment at tig00004442_pilon:229350..231482- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATAATGCTGACGGTTCCCATGATATCAGTGATTCCGCTCCCGAAGA
AGCACAGCAACAATCACCACTAGAGATATGGAGTCAGTTCGATCTCAATG
GACGTCGAGGCGAACTAGACAAACATGGGCTGGAAATCGCAGACCGAATT
GAACAGTCTCAGGCATCCCGAAAGCAGCTAACCGTCGCGACGCGGGCTTT
AAGAGCCTCTATGGCAGAGGGCAGTACAATTCCGAAAAAGGATTACATTT
CTTTACTCAAGTCTTATCAAACCGAAGTTGATTCCCTCACAAATCGCGCT
AAATTCGCCGAAACCGTCTTTCTTTCGCTTTACAAAGACTTATACGACGC
ACCAGATCCCGTCGAAGAACTAAGCCGAGCGTATGCTGCTTTTCTCAAGA
TCCAAGAACTCGAAAAAGAAAATGAAGCTCTAAAGGAACAGCAAGGAAAT
CTCATTGAGCGTAATAACGTCTCCACCAAGTATTTAGAGAAAATATCGGA
CCTAGAGTCCGAGATGGCCGCAATGAAGAATCGATTCAAGGAAGAAGCCG
TGGCTAAGATTGAGGAAAAGCAGGCTGAATGGATGGCAGAACAGCAACAA
ACTATGGAAGCGTACGAGTTGCGAGAACAAGAGCTCCTGCACCAGCTGCG
CCTTGCGAATGACCATACTCGTCGATTGCAAGCCAATTCAGATGAAATCA
GACGCCAACTAAACGATACGAGTTCTCAGCTTGAAACCATGAAGAGTAGC
CGAGCAAATGTCAGCGAGATGGCCGTTGAAGATCTGGAGAGGGCTCATGC
CGAAGTGAAAATACTTCGAAGCCGTACGAATGAGCTGGAAAATATTGTAT
CTGATAGGCAAAAGGGAAATGTTATCTCTGGTGGTACTTCAATAGCACGC
TCCGCTTTATCTGCCGAACTGGCTGCAAGAGATGTCGAAGTATCTCAACT
GCGTGACCAAGTGGCTATCTTAGAGGAATTGCTCGGTGGAAAAGACCATG
AGAAGAGCAAAGAGTTTGCGAAGCTTACAGACTCTATTGAAGAAAAGGAC
AAGAAACTTGCTGAGTTGAAAGAAGAACTTGCCAGACTTCCATCACTCGA
AGAGTATCAAACAATGGTTCGTCAGTTCGAGACCTTACAGTCTTTTCAGC
TCATGGAAGCCGAGACTTCGGAAGAAGCTGCAGAACCTGGGGAAAGTTCT
AATGGAAATCCTACTTCTAACGCGACCGATTCTCTTGAAAGGAAGCTGTT
AGAAAAGGCGAAAGTTTTAGAAGGGAAACTTACTCGGATGAGAGTTGAAA
TCAGAGAGAAAAACAGTGAGATCAATGATCTGCGAACCACAGTTCGTTCT
AACGAGGACCAGATTGCTGATCAAAAGTCTCTAATTTCGAAGCTTGAAAG
AAGCATTAGCGCTATGACAAGCGATAATGTTTCTTCTGCTGTGAATAGAA
GAAAGGGTAGTGCCATACTTGATCGCGACATTCCCGACTTTGCCAATCTC
GAAAAAGAGGGTGAAGAACACGAGGATAGTGCGAGCGCTTGGGAATGGGG
TGATAGACAGCAGGCTGAAAGCCTTCGCTCGATAATCCGGGAGGAACCAT
CCATGCTGGATATTGTGGCCGGTCAACGTGATCGATTCAGGGCAAGAACA
ATGGAACTCGAAGAAGATAACAGAAAATTAATGGAGCGTATTGAGAAACT
CACGAGTGACATGGACTCCTTGAAGAATGATAATGTTTGCCTCTATGAGA
AGATTCGTTATCTGCAATCATATCAACAATCTGGAGGAGGCGCAATGAGC
ACTGCCGGGGCACCTTCGTCAGAGGCGCATCATTCTATCAACATAGGTGA
CGATGAAGACAGAGGAAACTTCGTCGGGAAGTACCGCTCTATGTACGAGG
ACATGGTTAATCCGTATACAATTTTTAACAGACGAGAGAGACACAAGCGC
ATGAGCGAAATGTCAGCTCCTGAGCGCTTGACTCTTCGTGCAAGCCAGCG
GGCTCTGAGCACCAAGACATCGCGACTCATTGTTTTCTTCTACATAATAT
CATTGCATGTATTAGTAGCATTGGTTCTGAGCTTCTCGCCTTCAAGTTGC
GACCAGACTGTCACAACAAAGGCACAGCATTAG
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protein sequence of Gchil10006.t1

>Gchil10006.t1 ID=Gchil10006.t1|Name=Gchil10006.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=711bp
MNNADGSHDISDSAPEEAQQQSPLEIWSQFDLNGRRGELDKHGLEIADRI
EQSQASRKQLTVATRALRASMAEGSTIPKKDYISLLKSYQTEVDSLTNRA
KFAETVFLSLYKDLYDAPDPVEELSRAYAAFLKIQELEKENEALKEQQGN
LIERNNVSTKYLEKISDLESEMAAMKNRFKEEAVAKIEEKQAEWMAEQQQ
TMEAYELREQELLHQLRLANDHTRRLQANSDEIRRQLNDTSSQLETMKSS
RANVSEMAVEDLERAHAEVKILRSRTNELENIVSDRQKGNVISGGTSIAR
SALSAELAARDVEVSQLRDQVAILEELLGGKDHEKSKEFAKLTDSIEEKD
KKLAELKEELARLPSLEEYQTMVRQFETLQSFQLMEAETSEEAAEPGESS
NGNPTSNATDSLERKLLEKAKVLEGKLTRMRVEIREKNSEINDLRTTVRS
NEDQIADQKSLISKLERSISAMTSDNVSSAVNRRKGSAILDRDIPDFANL
EKEGEEHEDSASAWEWGDRQQAESLRSIIREEPSMLDIVAGQRDRFRART
MELEEDNRKLMERIEKLTSDMDSLKNDNVCLYEKIRYLQSYQQSGGGAMS
TAGAPSSEAHHSINIGDDEDRGNFVGKYRSMYEDMVNPYTIFNRRERHKR
MSEMSAPERLTLRASQRALSTKTSRLIVFFYIISLHVLVALVLSFSPSSC
DQTVTTKAQH*
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mRNA from alignment at tig00004442_pilon:229350..231482-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10006.t1 ID=Gchil10006.t1|Name=Gchil10006.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2133bp|location=Sequence derived from alignment at tig00004442_pilon:229350..231482- (Gracilaria chilensis NLEC103_M9 male)
ATGAATAATGCTGACGGTTCCCATGATATCAGTGATTCCGCTCCCGAAGA
AGCACAGCAACAATCACCACTAGAGATATGGAGTCAGTTCGATCTCAATG
GACGTCGAGGCGAACTAGACAAACATGGGCTGGAAATCGCAGACCGAATT
GAACAGTCTCAGGCATCCCGAAAGCAGCTAACCGTCGCGACGCGGGCTTT
AAGAGCCTCTATGGCAGAGGGCAGTACAATTCCGAAAAAGGATTACATTT
CTTTACTCAAGTCTTATCAAACCGAAGTTGATTCCCTCACAAATCGCGCT
AAATTCGCCGAAACCGTCTTTCTTTCGCTTTACAAAGACTTATACGACGC
ACCAGATCCCGTCGAAGAACTAAGCCGAGCGTATGCTGCTTTTCTCAAGA
TCCAAGAACTCGAAAAAGAAAATGAAGCTCTAAAGGAACAGCAAGGAAAT
CTCATTGAGCGTAATAACGTCTCCACCAAGTATTTAGAGAAAATATCGGA
CCTAGAGTCCGAGATGGCCGCAATGAAGAATCGATTCAAGGAAGAAGCCG
TGGCTAAGATTGAGGAAAAGCAGGCTGAATGGATGGCAGAACAGCAACAA
ACTATGGAAGCGTACGAGTTGCGAGAACAAGAGCTCCTGCACCAGCTGCG
CCTTGCGAATGACCATACTCGTCGATTGCAAGCCAATTCAGATGAAATCA
GACGCCAACTAAACGATACGAGTTCTCAGCTTGAAACCATGAAGAGTAGC
CGAGCAAATGTCAGCGAGATGGCCGTTGAAGATCTGGAGAGGGCTCATGC
CGAAGTGAAAATACTTCGAAGCCGTACGAATGAGCTGGAAAATATTGTAT
CTGATAGGCAAAAGGGAAATGTTATCTCTGGTGGTACTTCAATAGCACGC
TCCGCTTTATCTGCCGAACTGGCTGCAAGAGATGTCGAAGTATCTCAACT
GCGTGACCAAGTGGCTATCTTAGAGGAATTGCTCGGTGGAAAAGACCATG
AGAAGAGCAAAGAGTTTGCGAAGCTTACAGACTCTATTGAAGAAAAGGAC
AAGAAACTTGCTGAGTTGAAAGAAGAACTTGCCAGACTTCCATCACTCGA
AGAGTATCAAACAATGGTTCGTCAGTTCGAGACCTTACAGTCTTTTCAGC
TCATGGAAGCCGAGACTTCGGAAGAAGCTGCAGAACCTGGGGAAAGTTCT
AATGGAAATCCTACTTCTAACGCGACCGATTCTCTTGAAAGGAAGCTGTT
AGAAAAGGCGAAAGTTTTAGAAGGGAAACTTACTCGGATGAGAGTTGAAA
TCAGAGAGAAAAACAGTGAGATCAATGATCTGCGAACCACAGTTCGTTCT
AACGAGGACCAGATTGCTGATCAAAAGTCTCTAATTTCGAAGCTTGAAAG
AAGCATTAGCGCTATGACAAGCGATAATGTTTCTTCTGCTGTGAATAGAA
GAAAGGGTAGTGCCATACTTGATCGCGACATTCCCGACTTTGCCAATCTC
GAAAAAGAGGGTGAAGAACACGAGGATAGTGCGAGCGCTTGGGAATGGGG
TGATAGACAGCAGGCTGAAAGCCTTCGCTCGATAATCCGGGAGGAACCAT
CCATGCTGGATATTGTGGCCGGTCAACGTGATCGATTCAGGGCAAGAACA
ATGGAACTCGAAGAAGATAACAGAAAATTAATGGAGCGTATTGAGAAACT
CACGAGTGACATGGACTCCTTGAAGAATGATAATGTTTGCCTCTATGAGA
AGATTCGTTATCTGCAATCATATCAACAATCTGGAGGAGGCGCAATGAGC
ACTGCCGGGGCACCTTCGTCAGAGGCGCATCATTCTATCAACATAGGTGA
CGATGAAGACAGAGGAAACTTCGTCGGGAAGTACCGCTCTATGTACGAGG
ACATGGTTAATCCGTATACAATTTTTAACAGACGAGAGAGACACAAGCGC
ATGAGCGAAATGTCAGCTCCTGAGCGCTTGACTCTTCGTGCAAGCCAGCG
GGCTCTGAGCACCAAGACATCGCGACTCATTGTTTTCTTCTACATAATAT
CATTGCATGTATTAGTAGCATTGGTTCTGAGCTTCTCGCCTTCAAGTTGC
GACCAGACTGTCACAACAAAGGCACAGCATTAG
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Coding sequence (CDS) from alignment at tig00004442_pilon:229350..231482-

>Gchil10006.t1 ID=Gchil10006.t1|Name=Gchil10006.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2133bp|location=Sequence derived from alignment at tig00004442_pilon:229350..231482- (Gracilaria chilensis NLEC103_M9 male)
ATGAATAATGCTGACGGTTCCCATGATATCAGTGATTCCGCTCCCGAAGA
AGCACAGCAACAATCACCACTAGAGATATGGAGTCAGTTCGATCTCAATG
GACGTCGAGGCGAACTAGACAAACATGGGCTGGAAATCGCAGACCGAATT
GAACAGTCTCAGGCATCCCGAAAGCAGCTAACCGTCGCGACGCGGGCTTT
AAGAGCCTCTATGGCAGAGGGCAGTACAATTCCGAAAAAGGATTACATTT
CTTTACTCAAGTCTTATCAAACCGAAGTTGATTCCCTCACAAATCGCGCT
AAATTCGCCGAAACCGTCTTTCTTTCGCTTTACAAAGACTTATACGACGC
ACCAGATCCCGTCGAAGAACTAAGCCGAGCGTATGCTGCTTTTCTCAAGA
TCCAAGAACTCGAAAAAGAAAATGAAGCTCTAAAGGAACAGCAAGGAAAT
CTCATTGAGCGTAATAACGTCTCCACCAAGTATTTAGAGAAAATATCGGA
CCTAGAGTCCGAGATGGCCGCAATGAAGAATCGATTCAAGGAAGAAGCCG
TGGCTAAGATTGAGGAAAAGCAGGCTGAATGGATGGCAGAACAGCAACAA
ACTATGGAAGCGTACGAGTTGCGAGAACAAGAGCTCCTGCACCAGCTGCG
CCTTGCGAATGACCATACTCGTCGATTGCAAGCCAATTCAGATGAAATCA
GACGCCAACTAAACGATACGAGTTCTCAGCTTGAAACCATGAAGAGTAGC
CGAGCAAATGTCAGCGAGATGGCCGTTGAAGATCTGGAGAGGGCTCATGC
CGAAGTGAAAATACTTCGAAGCCGTACGAATGAGCTGGAAAATATTGTAT
CTGATAGGCAAAAGGGAAATGTTATCTCTGGTGGTACTTCAATAGCACGC
TCCGCTTTATCTGCCGAACTGGCTGCAAGAGATGTCGAAGTATCTCAACT
GCGTGACCAAGTGGCTATCTTAGAGGAATTGCTCGGTGGAAAAGACCATG
AGAAGAGCAAAGAGTTTGCGAAGCTTACAGACTCTATTGAAGAAAAGGAC
AAGAAACTTGCTGAGTTGAAAGAAGAACTTGCCAGACTTCCATCACTCGA
AGAGTATCAAACAATGGTTCGTCAGTTCGAGACCTTACAGTCTTTTCAGC
TCATGGAAGCCGAGACTTCGGAAGAAGCTGCAGAACCTGGGGAAAGTTCT
AATGGAAATCCTACTTCTAACGCGACCGATTCTCTTGAAAGGAAGCTGTT
AGAAAAGGCGAAAGTTTTAGAAGGGAAACTTACTCGGATGAGAGTTGAAA
TCAGAGAGAAAAACAGTGAGATCAATGATCTGCGAACCACAGTTCGTTCT
AACGAGGACCAGATTGCTGATCAAAAGTCTCTAATTTCGAAGCTTGAAAG
AAGCATTAGCGCTATGACAAGCGATAATGTTTCTTCTGCTGTGAATAGAA
GAAAGGGTAGTGCCATACTTGATCGCGACATTCCCGACTTTGCCAATCTC
GAAAAAGAGGGTGAAGAACACGAGGATAGTGCGAGCGCTTGGGAATGGGG
TGATAGACAGCAGGCTGAAAGCCTTCGCTCGATAATCCGGGAGGAACCAT
CCATGCTGGATATTGTGGCCGGTCAACGTGATCGATTCAGGGCAAGAACA
ATGGAACTCGAAGAAGATAACAGAAAATTAATGGAGCGTATTGAGAAACT
CACGAGTGACATGGACTCCTTGAAGAATGATAATGTTTGCCTCTATGAGA
AGATTCGTTATCTGCAATCATATCAACAATCTGGAGGAGGCGCAATGAGC
ACTGCCGGGGCACCTTCGTCAGAGGCGCATCATTCTATCAACATAGGTGA
CGATGAAGACAGAGGAAACTTCGTCGGGAAGTACCGCTCTATGTACGAGG
ACATGGTTAATCCGTATACAATTTTTAACAGACGAGAGAGACACAAGCGC
ATGAGCGAAATGTCAGCTCCTGAGCGCTTGACTCTTCGTGCAAGCCAGCG
GGCTCTGAGCACCAAGACATCGCGACTCATTGTTTTCTTCTACATAATAT
CATTGCATGTATTAGTAGCATTGGTTCTGAGCTTCTCGCCTTCAAGTTGC
GACCAGACTGTCACAACAAAGGCACAGCATTAG
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