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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 4096.XP_009798773.1 |
PFAMs | CASP_C |
Max annot lvl | 35493|Streptophyta |
KEGG ko | ko:K09313 |
Evalue | 4.47e-59 |
EggNOG OGs | KOG0963@1|root,KOG0963@2759|Eukaryota,37SEU@33090|Viridiplantae,3G7EH@35493|Streptophyta,44FKH@71274|asterids |
Description | AtCASP,CASP |
COG category | K |
BRITE | ko00000,ko03000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil10006.t1 ID=Gchil10006.t1|Name=Gchil10006.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=711bp MNNADGSHDISDSAPEEAQQQSPLEIWSQFDLNGRRGELDKHGLEIADRI EQSQASRKQLTVATRALRASMAEGSTIPKKDYISLLKSYQTEVDSLTNRA KFAETVFLSLYKDLYDAPDPVEELSRAYAAFLKIQELEKENEALKEQQGN LIERNNVSTKYLEKISDLESEMAAMKNRFKEEAVAKIEEKQAEWMAEQQQ TMEAYELREQELLHQLRLANDHTRRLQANSDEIRRQLNDTSSQLETMKSS RANVSEMAVEDLERAHAEVKILRSRTNELENIVSDRQKGNVISGGTSIAR SALSAELAARDVEVSQLRDQVAILEELLGGKDHEKSKEFAKLTDSIEEKD KKLAELKEELARLPSLEEYQTMVRQFETLQSFQLMEAETSEEAAEPGESS NGNPTSNATDSLERKLLEKAKVLEGKLTRMRVEIREKNSEINDLRTTVRS NEDQIADQKSLISKLERSISAMTSDNVSSAVNRRKGSAILDRDIPDFANL EKEGEEHEDSASAWEWGDRQQAESLRSIIREEPSMLDIVAGQRDRFRART MELEEDNRKLMERIEKLTSDMDSLKNDNVCLYEKIRYLQSYQQSGGGAMS TAGAPSSEAHHSINIGDDEDRGNFVGKYRSMYEDMVNPYTIFNRRERHKR MSEMSAPERLTLRASQRALSTKTSRLIVFFYIISLHVLVALVLSFSPSSC DQTVTTKAQH* back to topspliced messenger RNA >Gchil10006.t1 ID=Gchil10006.t1|Name=Gchil10006.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2133bp|location=Sequence derived from alignment at tig00004442_pilon:229350..231482- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGAATAATGCTGACGGTTCCCATGATATCAGTGATTCCGCTCCCGAAGA AGCACAGCAACAATCACCACTAGAGATATGGAGTCAGTTCGATCTCAATG GACGTCGAGGCGAACTAGACAAACATGGGCTGGAAATCGCAGACCGAATT GAACAGTCTCAGGCATCCCGAAAGCAGCTAACCGTCGCGACGCGGGCTTT AAGAGCCTCTATGGCAGAGGGCAGTACAATTCCGAAAAAGGATTACATTT CTTTACTCAAGTCTTATCAAACCGAAGTTGATTCCCTCACAAATCGCGCT AAATTCGCCGAAACCGTCTTTCTTTCGCTTTACAAAGACTTATACGACGC ACCAGATCCCGTCGAAGAACTAAGCCGAGCGTATGCTGCTTTTCTCAAGA TCCAAGAACTCGAAAAAGAAAATGAAGCTCTAAAGGAACAGCAAGGAAAT CTCATTGAGCGTAATAACGTCTCCACCAAGTATTTAGAGAAAATATCGGA CCTAGAGTCCGAGATGGCCGCAATGAAGAATCGATTCAAGGAAGAAGCCG TGGCTAAGATTGAGGAAAAGCAGGCTGAATGGATGGCAGAACAGCAACAA ACTATGGAAGCGTACGAGTTGCGAGAACAAGAGCTCCTGCACCAGCTGCG CCTTGCGAATGACCATACTCGTCGATTGCAAGCCAATTCAGATGAAATCA GACGCCAACTAAACGATACGAGTTCTCAGCTTGAAACCATGAAGAGTAGC CGAGCAAATGTCAGCGAGATGGCCGTTGAAGATCTGGAGAGGGCTCATGC CGAAGTGAAAATACTTCGAAGCCGTACGAATGAGCTGGAAAATATTGTAT CTGATAGGCAAAAGGGAAATGTTATCTCTGGTGGTACTTCAATAGCACGC TCCGCTTTATCTGCCGAACTGGCTGCAAGAGATGTCGAAGTATCTCAACT GCGTGACCAAGTGGCTATCTTAGAGGAATTGCTCGGTGGAAAAGACCATG AGAAGAGCAAAGAGTTTGCGAAGCTTACAGACTCTATTGAAGAAAAGGAC AAGAAACTTGCTGAGTTGAAAGAAGAACTTGCCAGACTTCCATCACTCGA AGAGTATCAAACAATGGTTCGTCAGTTCGAGACCTTACAGTCTTTTCAGC TCATGGAAGCCGAGACTTCGGAAGAAGCTGCAGAACCTGGGGAAAGTTCT AATGGAAATCCTACTTCTAACGCGACCGATTCTCTTGAAAGGAAGCTGTT AGAAAAGGCGAAAGTTTTAGAAGGGAAACTTACTCGGATGAGAGTTGAAA TCAGAGAGAAAAACAGTGAGATCAATGATCTGCGAACCACAGTTCGTTCT AACGAGGACCAGATTGCTGATCAAAAGTCTCTAATTTCGAAGCTTGAAAG AAGCATTAGCGCTATGACAAGCGATAATGTTTCTTCTGCTGTGAATAGAA GAAAGGGTAGTGCCATACTTGATCGCGACATTCCCGACTTTGCCAATCTC GAAAAAGAGGGTGAAGAACACGAGGATAGTGCGAGCGCTTGGGAATGGGG TGATAGACAGCAGGCTGAAAGCCTTCGCTCGATAATCCGGGAGGAACCAT CCATGCTGGATATTGTGGCCGGTCAACGTGATCGATTCAGGGCAAGAACA ATGGAACTCGAAGAAGATAACAGAAAATTAATGGAGCGTATTGAGAAACT CACGAGTGACATGGACTCCTTGAAGAATGATAATGTTTGCCTCTATGAGA AGATTCGTTATCTGCAATCATATCAACAATCTGGAGGAGGCGCAATGAGC ACTGCCGGGGCACCTTCGTCAGAGGCGCATCATTCTATCAACATAGGTGA CGATGAAGACAGAGGAAACTTCGTCGGGAAGTACCGCTCTATGTACGAGG ACATGGTTAATCCGTATACAATTTTTAACAGACGAGAGAGACACAAGCGC ATGAGCGAAATGTCAGCTCCTGAGCGCTTGACTCTTCGTGCAAGCCAGCG GGCTCTGAGCACCAAGACATCGCGACTCATTGTTTTCTTCTACATAATAT CATTGCATGTATTAGTAGCATTGGTTCTGAGCTTCTCGCCTTCAAGTTGC GACCAGACTGTCACAACAAAGGCACAGCATTAG back to topprotein sequence of Gchil10006.t1 >Gchil10006.t1 ID=Gchil10006.t1|Name=Gchil10006.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=711bp
MNNADGSHDISDSAPEEAQQQSPLEIWSQFDLNGRRGELDKHGLEIADRI EQSQASRKQLTVATRALRASMAEGSTIPKKDYISLLKSYQTEVDSLTNRA KFAETVFLSLYKDLYDAPDPVEELSRAYAAFLKIQELEKENEALKEQQGN LIERNNVSTKYLEKISDLESEMAAMKNRFKEEAVAKIEEKQAEWMAEQQQ TMEAYELREQELLHQLRLANDHTRRLQANSDEIRRQLNDTSSQLETMKSS RANVSEMAVEDLERAHAEVKILRSRTNELENIVSDRQKGNVISGGTSIAR SALSAELAARDVEVSQLRDQVAILEELLGGKDHEKSKEFAKLTDSIEEKD KKLAELKEELARLPSLEEYQTMVRQFETLQSFQLMEAETSEEAAEPGESS NGNPTSNATDSLERKLLEKAKVLEGKLTRMRVEIREKNSEINDLRTTVRS NEDQIADQKSLISKLERSISAMTSDNVSSAVNRRKGSAILDRDIPDFANL EKEGEEHEDSASAWEWGDRQQAESLRSIIREEPSMLDIVAGQRDRFRART MELEEDNRKLMERIEKLTSDMDSLKNDNVCLYEKIRYLQSYQQSGGGAMS TAGAPSSEAHHSINIGDDEDRGNFVGKYRSMYEDMVNPYTIFNRRERHKR MSEMSAPERLTLRASQRALSTKTSRLIVFFYIISLHVLVALVLSFSPSSC DQTVTTKAQH* back to topmRNA from alignment at tig00004442_pilon:229350..231482- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil10006.t1 ID=Gchil10006.t1|Name=Gchil10006.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2133bp|location=Sequence derived from alignment at tig00004442_pilon:229350..231482- (Gracilaria chilensis NLEC103_M9 male) ATGAATAATGCTGACGGTTCCCATGATATCAGTGATTCCGCTCCCGAAGA
AGCACAGCAACAATCACCACTAGAGATATGGAGTCAGTTCGATCTCAATG
GACGTCGAGGCGAACTAGACAAACATGGGCTGGAAATCGCAGACCGAATT
GAACAGTCTCAGGCATCCCGAAAGCAGCTAACCGTCGCGACGCGGGCTTT
AAGAGCCTCTATGGCAGAGGGCAGTACAATTCCGAAAAAGGATTACATTT
CTTTACTCAAGTCTTATCAAACCGAAGTTGATTCCCTCACAAATCGCGCT
AAATTCGCCGAAACCGTCTTTCTTTCGCTTTACAAAGACTTATACGACGC
ACCAGATCCCGTCGAAGAACTAAGCCGAGCGTATGCTGCTTTTCTCAAGA
TCCAAGAACTCGAAAAAGAAAATGAAGCTCTAAAGGAACAGCAAGGAAAT
CTCATTGAGCGTAATAACGTCTCCACCAAGTATTTAGAGAAAATATCGGA
CCTAGAGTCCGAGATGGCCGCAATGAAGAATCGATTCAAGGAAGAAGCCG
TGGCTAAGATTGAGGAAAAGCAGGCTGAATGGATGGCAGAACAGCAACAA
ACTATGGAAGCGTACGAGTTGCGAGAACAAGAGCTCCTGCACCAGCTGCG
CCTTGCGAATGACCATACTCGTCGATTGCAAGCCAATTCAGATGAAATCA
GACGCCAACTAAACGATACGAGTTCTCAGCTTGAAACCATGAAGAGTAGC
CGAGCAAATGTCAGCGAGATGGCCGTTGAAGATCTGGAGAGGGCTCATGC
CGAAGTGAAAATACTTCGAAGCCGTACGAATGAGCTGGAAAATATTGTAT
CTGATAGGCAAAAGGGAAATGTTATCTCTGGTGGTACTTCAATAGCACGC
TCCGCTTTATCTGCCGAACTGGCTGCAAGAGATGTCGAAGTATCTCAACT
GCGTGACCAAGTGGCTATCTTAGAGGAATTGCTCGGTGGAAAAGACCATG
AGAAGAGCAAAGAGTTTGCGAAGCTTACAGACTCTATTGAAGAAAAGGAC
AAGAAACTTGCTGAGTTGAAAGAAGAACTTGCCAGACTTCCATCACTCGA
AGAGTATCAAACAATGGTTCGTCAGTTCGAGACCTTACAGTCTTTTCAGC
TCATGGAAGCCGAGACTTCGGAAGAAGCTGCAGAACCTGGGGAAAGTTCT
AATGGAAATCCTACTTCTAACGCGACCGATTCTCTTGAAAGGAAGCTGTT
AGAAAAGGCGAAAGTTTTAGAAGGGAAACTTACTCGGATGAGAGTTGAAA
TCAGAGAGAAAAACAGTGAGATCAATGATCTGCGAACCACAGTTCGTTCT
AACGAGGACCAGATTGCTGATCAAAAGTCTCTAATTTCGAAGCTTGAAAG
AAGCATTAGCGCTATGACAAGCGATAATGTTTCTTCTGCTGTGAATAGAA
GAAAGGGTAGTGCCATACTTGATCGCGACATTCCCGACTTTGCCAATCTC
GAAAAAGAGGGTGAAGAACACGAGGATAGTGCGAGCGCTTGGGAATGGGG
TGATAGACAGCAGGCTGAAAGCCTTCGCTCGATAATCCGGGAGGAACCAT
CCATGCTGGATATTGTGGCCGGTCAACGTGATCGATTCAGGGCAAGAACA
ATGGAACTCGAAGAAGATAACAGAAAATTAATGGAGCGTATTGAGAAACT
CACGAGTGACATGGACTCCTTGAAGAATGATAATGTTTGCCTCTATGAGA
AGATTCGTTATCTGCAATCATATCAACAATCTGGAGGAGGCGCAATGAGC
ACTGCCGGGGCACCTTCGTCAGAGGCGCATCATTCTATCAACATAGGTGA
CGATGAAGACAGAGGAAACTTCGTCGGGAAGTACCGCTCTATGTACGAGG
ACATGGTTAATCCGTATACAATTTTTAACAGACGAGAGAGACACAAGCGC
ATGAGCGAAATGTCAGCTCCTGAGCGCTTGACTCTTCGTGCAAGCCAGCG
GGCTCTGAGCACCAAGACATCGCGACTCATTGTTTTCTTCTACATAATAT
CATTGCATGTATTAGTAGCATTGGTTCTGAGCTTCTCGCCTTCAAGTTGC
GACCAGACTGTCACAACAAAGGCACAGCATTAG back to topCoding sequence (CDS) from alignment at tig00004442_pilon:229350..231482- >Gchil10006.t1 ID=Gchil10006.t1|Name=Gchil10006.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2133bp|location=Sequence derived from alignment at tig00004442_pilon:229350..231482- (Gracilaria chilensis NLEC103_M9 male) ATGAATAATGCTGACGGTTCCCATGATATCAGTGATTCCGCTCCCGAAGA AGCACAGCAACAATCACCACTAGAGATATGGAGTCAGTTCGATCTCAATG GACGTCGAGGCGAACTAGACAAACATGGGCTGGAAATCGCAGACCGAATT GAACAGTCTCAGGCATCCCGAAAGCAGCTAACCGTCGCGACGCGGGCTTT AAGAGCCTCTATGGCAGAGGGCAGTACAATTCCGAAAAAGGATTACATTT CTTTACTCAAGTCTTATCAAACCGAAGTTGATTCCCTCACAAATCGCGCT AAATTCGCCGAAACCGTCTTTCTTTCGCTTTACAAAGACTTATACGACGC ACCAGATCCCGTCGAAGAACTAAGCCGAGCGTATGCTGCTTTTCTCAAGA TCCAAGAACTCGAAAAAGAAAATGAAGCTCTAAAGGAACAGCAAGGAAAT CTCATTGAGCGTAATAACGTCTCCACCAAGTATTTAGAGAAAATATCGGA CCTAGAGTCCGAGATGGCCGCAATGAAGAATCGATTCAAGGAAGAAGCCG TGGCTAAGATTGAGGAAAAGCAGGCTGAATGGATGGCAGAACAGCAACAA ACTATGGAAGCGTACGAGTTGCGAGAACAAGAGCTCCTGCACCAGCTGCG CCTTGCGAATGACCATACTCGTCGATTGCAAGCCAATTCAGATGAAATCA GACGCCAACTAAACGATACGAGTTCTCAGCTTGAAACCATGAAGAGTAGC CGAGCAAATGTCAGCGAGATGGCCGTTGAAGATCTGGAGAGGGCTCATGC CGAAGTGAAAATACTTCGAAGCCGTACGAATGAGCTGGAAAATATTGTAT CTGATAGGCAAAAGGGAAATGTTATCTCTGGTGGTACTTCAATAGCACGC TCCGCTTTATCTGCCGAACTGGCTGCAAGAGATGTCGAAGTATCTCAACT GCGTGACCAAGTGGCTATCTTAGAGGAATTGCTCGGTGGAAAAGACCATG AGAAGAGCAAAGAGTTTGCGAAGCTTACAGACTCTATTGAAGAAAAGGAC AAGAAACTTGCTGAGTTGAAAGAAGAACTTGCCAGACTTCCATCACTCGA AGAGTATCAAACAATGGTTCGTCAGTTCGAGACCTTACAGTCTTTTCAGC TCATGGAAGCCGAGACTTCGGAAGAAGCTGCAGAACCTGGGGAAAGTTCT AATGGAAATCCTACTTCTAACGCGACCGATTCTCTTGAAAGGAAGCTGTT AGAAAAGGCGAAAGTTTTAGAAGGGAAACTTACTCGGATGAGAGTTGAAA TCAGAGAGAAAAACAGTGAGATCAATGATCTGCGAACCACAGTTCGTTCT AACGAGGACCAGATTGCTGATCAAAAGTCTCTAATTTCGAAGCTTGAAAG AAGCATTAGCGCTATGACAAGCGATAATGTTTCTTCTGCTGTGAATAGAA GAAAGGGTAGTGCCATACTTGATCGCGACATTCCCGACTTTGCCAATCTC GAAAAAGAGGGTGAAGAACACGAGGATAGTGCGAGCGCTTGGGAATGGGG TGATAGACAGCAGGCTGAAAGCCTTCGCTCGATAATCCGGGAGGAACCAT CCATGCTGGATATTGTGGCCGGTCAACGTGATCGATTCAGGGCAAGAACA ATGGAACTCGAAGAAGATAACAGAAAATTAATGGAGCGTATTGAGAAACT CACGAGTGACATGGACTCCTTGAAGAATGATAATGTTTGCCTCTATGAGA AGATTCGTTATCTGCAATCATATCAACAATCTGGAGGAGGCGCAATGAGC ACTGCCGGGGCACCTTCGTCAGAGGCGCATCATTCTATCAACATAGGTGA CGATGAAGACAGAGGAAACTTCGTCGGGAAGTACCGCTCTATGTACGAGG ACATGGTTAATCCGTATACAATTTTTAACAGACGAGAGAGACACAAGCGC ATGAGCGAAATGTCAGCTCCTGAGCGCTTGACTCTTCGTGCAAGCCAGCG GGCTCTGAGCACCAAGACATCGCGACTCATTGTTTTCTTCTACATAATAT CATTGCATGTATTAGTAGCATTGGTTCTGAGCTTCTCGCCTTCAAGTTGC GACCAGACTGTCACAACAAAGGCACAGCATTAG back to top
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