Gchil10003.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10003.t1
Unique Name	Gchil10003.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	629

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:222678..224564 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMH064CT
PFAMs	DEP,DUF547
Max annot lvl	2759\|Eukaryota
Evalue	1.65e-126
EggNOG OGs	28JT7@1\|root,2QS72@2759\|Eukaryota
Description	protein disulfide oxidoreductase activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10003	Gchil10003	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 222678..224564 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10003.t1.start1	Gchil10003.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 222678..222680 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10003.t1.CDS1	Gchil10003.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 222678..224564 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10003.t1.exon1	Gchil10003.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 222678..224564 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10003.t1.stop1	Gchil10003.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 224562..224564 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10003.t1	Gchil10003.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 222678..224564 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:222678..224564+
coding sequence from alignment at tig00004442_pilon:222678..224564+

mRNA sequence

>Gchil10003.t1 ID=Gchil10003.t1|Name=Gchil10003.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=629bp
MYSTTGRKRKALEQVVPGVVPNHSSQFAVYSQSSAAATTNPFDNEHYPIP
DFERVYTLMRDPKKGVPLADRRWRLSTYSKCFIGKEAVQWMVSNLSIDRK
AAVETGQKLMDAGILHHVTHSEPFSDAYFFYRFQEDDDGNVLNMKRIWDS
NIPTRHAVVVAKDLLTCLACLCEEHRKRILEAGASSDKIQTTRSAHMILA
SQPVTPLLDPTARNEPTDPVSSPNLFRSLSTPRLPSSGSPMIFSPSLQRR
ASQSKRPRKKDDDVDYSSLAKSEQFRKYTLAAAELQHVQLVALNQDERLA
FFVNVYNALCLHAHVVHGHPNSVFRRYVFFRVLSYRVAGLDMTLDDIEHG
ILRGNKKPPMLKFIQQLRPSDPKCQHVLTNRDGRIHFVISAGTKSDPPIR
ILDGENVQEELDDASVEFLSCSVKVDVEKRTVTLPRIFYWYSDDFPSPEN
NLLLWVASYLSVETSHQLVTIVNDDGPQPVLSYADFDWSNPEARFNASVV
RRKRRRLERECDLDDGQQDAIDLSLQMHIGDMSSIFSAQPGASEDLFKNS
HMSSPMIFAANGSNEVKQSPTLLNNTPSAGGRSQEDSSKRLTPDIMNVSQ
PEAPTLKSSENGSSTNAAATAAAAASPA*

spliced messenger RNA

>Gchil10003.t1 ID=Gchil10003.t1|Name=Gchil10003.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1887bp|location=Sequence derived from alignment at tig00004442_pilon:222678..224564+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACTCTACAACCGGGCGGAAACGAAAAGCTCTGGAACAGGTGGTGCC
TGGTGTCGTTCCCAACCACAGCTCCCAATTCGCCGTATACTCTCAGTCTT
CCGCTGCCGCAACAACAAATCCTTTCGACAATGAGCACTACCCCATTCCG
GACTTCGAGCGTGTATATACGCTAATGCGTGATCCGAAGAAAGGTGTCCC
ACTCGCAGACCGTCGCTGGAGACTCAGTACGTACTCAAAGTGCTTCATAG
GCAAAGAAGCCGTGCAATGGATGGTTAGCAACCTCTCGATAGATCGAAAA
GCCGCTGTGGAAACAGGACAAAAGCTCATGGACGCTGGTATTTTGCACCA
TGTTACCCATTCAGAACCATTTTCCGACGCTTACTTCTTCTACCGCTTCC
AAGAAGATGATGATGGAAATGTGCTCAACATGAAGCGAATATGGGATTCC
AATATTCCCACTAGACATGCAGTTGTTGTTGCCAAAGATCTCCTCACGTG
TTTGGCGTGCTTGTGCGAAGAACATCGCAAGCGAATTCTCGAAGCGGGTG
CTAGTTCGGATAAAATTCAGACAACCAGATCCGCCCACATGATACTTGCC
TCTCAGCCAGTTACTCCGCTATTAGATCCAACCGCTCGCAATGAGCCTAC
GGACCCAGTCTCCTCGCCCAATTTGTTTCGATCGCTCTCTACTCCCCGTT
TACCTTCCTCAGGATCCCCCATGATATTTTCACCCTCTTTACAAAGACGT
GCTTCTCAATCAAAGCGCCCAAGAAAGAAGGATGATGATGTTGATTACTC
GTCCTTAGCCAAAAGCGAACAGTTTCGCAAATATACGCTGGCTGCGGCGG
AATTACAACACGTTCAGTTGGTTGCACTTAACCAAGACGAAAGGCTTGCT
TTTTTTGTGAATGTGTACAACGCTCTATGTTTACATGCGCACGTAGTCCA
CGGACATCCAAATAGCGTTTTTCGCCGTTATGTCTTCTTTCGAGTATTAT
CTTATAGGGTAGCCGGACTAGATATGACTTTGGATGATATTGAACATGGT
ATACTAAGGGGGAATAAGAAACCTCCAATGTTGAAGTTTATTCAACAACT
AAGACCTTCAGATCCAAAATGTCAACATGTACTCACAAATCGAGATGGTC
GCATTCATTTCGTGATATCCGCTGGCACGAAATCGGACCCACCTATCCGA
ATCCTTGACGGTGAGAATGTGCAAGAGGAACTTGATGACGCTTCCGTTGA
GTTTCTGAGCTGCTCAGTCAAGGTAGACGTCGAGAAGCGTACGGTTACAC
TTCCACGGATCTTTTATTGGTATTCTGACGATTTTCCGAGCCCTGAAAAT
AACCTATTGTTGTGGGTGGCCTCATATCTTTCTGTTGAAACATCGCATCA
ACTCGTCACCATCGTGAACGATGATGGGCCACAACCCGTGTTGTCTTATG
CAGACTTTGATTGGTCAAACCCGGAAGCAAGATTTAATGCATCTGTTGTA
CGAAGAAAGCGGAGAAGACTAGAAAGAGAGTGTGATCTCGATGACGGTCA
ACAAGATGCAATTGACCTTAGTCTCCAGATGCACATTGGAGACATGTCCT
CCATATTTTCTGCACAGCCTGGTGCTAGCGAAGACTTGTTCAAGAATAGC
CATATGAGTTCTCCAATGATATTTGCAGCAAACGGATCAAATGAAGTTAA
ACAATCTCCGACGTTGCTCAACAACACGCCAAGCGCTGGAGGTCGATCTC
AGGAAGACTCCTCCAAAAGGTTAACTCCTGATATAATGAATGTAAGCCAG
CCAGAGGCTCCAACCTTGAAGAGTAGTGAAAATGGGTCCAGTACAAAtgc
ggctgctacagctgctgctgccgcCTCACCGGCGTGA

protein sequence of Gchil10003.t1

>Gchil10003.t1 ID=Gchil10003.t1|Name=Gchil10003.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=629bp
MYSTTGRKRKALEQVVPGVVPNHSSQFAVYSQSSAAATTNPFDNEHYPIP
DFERVYTLMRDPKKGVPLADRRWRLSTYSKCFIGKEAVQWMVSNLSIDRK
AAVETGQKLMDAGILHHVTHSEPFSDAYFFYRFQEDDDGNVLNMKRIWDS
NIPTRHAVVVAKDLLTCLACLCEEHRKRILEAGASSDKIQTTRSAHMILA
SQPVTPLLDPTARNEPTDPVSSPNLFRSLSTPRLPSSGSPMIFSPSLQRR
ASQSKRPRKKDDDVDYSSLAKSEQFRKYTLAAAELQHVQLVALNQDERLA
FFVNVYNALCLHAHVVHGHPNSVFRRYVFFRVLSYRVAGLDMTLDDIEHG
ILRGNKKPPMLKFIQQLRPSDPKCQHVLTNRDGRIHFVISAGTKSDPPIR
ILDGENVQEELDDASVEFLSCSVKVDVEKRTVTLPRIFYWYSDDFPSPEN
NLLLWVASYLSVETSHQLVTIVNDDGPQPVLSYADFDWSNPEARFNASVV
RRKRRRLERECDLDDGQQDAIDLSLQMHIGDMSSIFSAQPGASEDLFKNS
HMSSPMIFAANGSNEVKQSPTLLNNTPSAGGRSQEDSSKRLTPDIMNVSQ
PEAPTLKSSENGSSTNAAATAAAAASPA*

mRNA from alignment at tig00004442_pilon:222678..224564+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10003.t1 ID=Gchil10003.t1|Name=Gchil10003.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1887bp|location=Sequence derived from alignment at tig00004442_pilon:222678..224564+ (Gracilaria chilensis NLEC103_M9 male)
ATGTACTCTACAACCGGGCGGAAACGAAAAGCTCTGGAACAGGTGGTGCC
TGGTGTCGTTCCCAACCACAGCTCCCAATTCGCCGTATACTCTCAGTCTT
CCGCTGCCGCAACAACAAATCCTTTCGACAATGAGCACTACCCCATTCCG
GACTTCGAGCGTGTATATACGCTAATGCGTGATCCGAAGAAAGGTGTCCC
ACTCGCAGACCGTCGCTGGAGACTCAGTACGTACTCAAAGTGCTTCATAG
GCAAAGAAGCCGTGCAATGGATGGTTAGCAACCTCTCGATAGATCGAAAA
GCCGCTGTGGAAACAGGACAAAAGCTCATGGACGCTGGTATTTTGCACCA
TGTTACCCATTCAGAACCATTTTCCGACGCTTACTTCTTCTACCGCTTCC
AAGAAGATGATGATGGAAATGTGCTCAACATGAAGCGAATATGGGATTCC
AATATTCCCACTAGACATGCAGTTGTTGTTGCCAAAGATCTCCTCACGTG
TTTGGCGTGCTTGTGCGAAGAACATCGCAAGCGAATTCTCGAAGCGGGTG
CTAGTTCGGATAAAATTCAGACAACCAGATCCGCCCACATGATACTTGCC
TCTCAGCCAGTTACTCCGCTATTAGATCCAACCGCTCGCAATGAGCCTAC
GGACCCAGTCTCCTCGCCCAATTTGTTTCGATCGCTCTCTACTCCCCGTT
TACCTTCCTCAGGATCCCCCATGATATTTTCACCCTCTTTACAAAGACGT
GCTTCTCAATCAAAGCGCCCAAGAAAGAAGGATGATGATGTTGATTACTC
GTCCTTAGCCAAAAGCGAACAGTTTCGCAAATATACGCTGGCTGCGGCGG
AATTACAACACGTTCAGTTGGTTGCACTTAACCAAGACGAAAGGCTTGCT
TTTTTTGTGAATGTGTACAACGCTCTATGTTTACATGCGCACGTAGTCCA
CGGACATCCAAATAGCGTTTTTCGCCGTTATGTCTTCTTTCGAGTATTAT
CTTATAGGGTAGCCGGACTAGATATGACTTTGGATGATATTGAACATGGT
ATACTAAGGGGGAATAAGAAACCTCCAATGTTGAAGTTTATTCAACAACT
AAGACCTTCAGATCCAAAATGTCAACATGTACTCACAAATCGAGATGGTC
GCATTCATTTCGTGATATCCGCTGGCACGAAATCGGACCCACCTATCCGA
ATCCTTGACGGTGAGAATGTGCAAGAGGAACTTGATGACGCTTCCGTTGA
GTTTCTGAGCTGCTCAGTCAAGGTAGACGTCGAGAAGCGTACGGTTACAC
TTCCACGGATCTTTTATTGGTATTCTGACGATTTTCCGAGCCCTGAAAAT
AACCTATTGTTGTGGGTGGCCTCATATCTTTCTGTTGAAACATCGCATCA
ACTCGTCACCATCGTGAACGATGATGGGCCACAACCCGTGTTGTCTTATG
CAGACTTTGATTGGTCAAACCCGGAAGCAAGATTTAATGCATCTGTTGTA
CGAAGAAAGCGGAGAAGACTAGAAAGAGAGTGTGATCTCGATGACGGTCA
ACAAGATGCAATTGACCTTAGTCTCCAGATGCACATTGGAGACATGTCCT
CCATATTTTCTGCACAGCCTGGTGCTAGCGAAGACTTGTTCAAGAATAGC
CATATGAGTTCTCCAATGATATTTGCAGCAAACGGATCAAATGAAGTTAA
ACAATCTCCGACGTTGCTCAACAACACGCCAAGCGCTGGAGGTCGATCTC
AGGAAGACTCCTCCAAAAGGTTAACTCCTGATATAATGAATGTAAGCCAG
CCAGAGGCTCCAACCTTGAAGAGTAGTGAAAATGGGTCCAGTACAAAtgc
ggctgctacagctgctgctgccgcCTCACCGGCGTGA

Coding sequence (CDS) from alignment at tig00004442_pilon:222678..224564+

>Gchil10003.t1 ID=Gchil10003.t1|Name=Gchil10003.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1887bp|location=Sequence derived from alignment at tig00004442_pilon:222678..224564+ (Gracilaria chilensis NLEC103_M9 male)
ATGTACTCTACAACCGGGCGGAAACGAAAAGCTCTGGAACAGGTGGTGCC
TGGTGTCGTTCCCAACCACAGCTCCCAATTCGCCGTATACTCTCAGTCTT
CCGCTGCCGCAACAACAAATCCTTTCGACAATGAGCACTACCCCATTCCG
GACTTCGAGCGTGTATATACGCTAATGCGTGATCCGAAGAAAGGTGTCCC
ACTCGCAGACCGTCGCTGGAGACTCAGTACGTACTCAAAGTGCTTCATAG
GCAAAGAAGCCGTGCAATGGATGGTTAGCAACCTCTCGATAGATCGAAAA
GCCGCTGTGGAAACAGGACAAAAGCTCATGGACGCTGGTATTTTGCACCA
TGTTACCCATTCAGAACCATTTTCCGACGCTTACTTCTTCTACCGCTTCC
AAGAAGATGATGATGGAAATGTGCTCAACATGAAGCGAATATGGGATTCC
AATATTCCCACTAGACATGCAGTTGTTGTTGCCAAAGATCTCCTCACGTG
TTTGGCGTGCTTGTGCGAAGAACATCGCAAGCGAATTCTCGAAGCGGGTG
CTAGTTCGGATAAAATTCAGACAACCAGATCCGCCCACATGATACTTGCC
TCTCAGCCAGTTACTCCGCTATTAGATCCAACCGCTCGCAATGAGCCTAC
GGACCCAGTCTCCTCGCCCAATTTGTTTCGATCGCTCTCTACTCCCCGTT
TACCTTCCTCAGGATCCCCCATGATATTTTCACCCTCTTTACAAAGACGT
GCTTCTCAATCAAAGCGCCCAAGAAAGAAGGATGATGATGTTGATTACTC
GTCCTTAGCCAAAAGCGAACAGTTTCGCAAATATACGCTGGCTGCGGCGG
AATTACAACACGTTCAGTTGGTTGCACTTAACCAAGACGAAAGGCTTGCT
TTTTTTGTGAATGTGTACAACGCTCTATGTTTACATGCGCACGTAGTCCA
CGGACATCCAAATAGCGTTTTTCGCCGTTATGTCTTCTTTCGAGTATTAT
CTTATAGGGTAGCCGGACTAGATATGACTTTGGATGATATTGAACATGGT
ATACTAAGGGGGAATAAGAAACCTCCAATGTTGAAGTTTATTCAACAACT
AAGACCTTCAGATCCAAAATGTCAACATGTACTCACAAATCGAGATGGTC
GCATTCATTTCGTGATATCCGCTGGCACGAAATCGGACCCACCTATCCGA
ATCCTTGACGGTGAGAATGTGCAAGAGGAACTTGATGACGCTTCCGTTGA
GTTTCTGAGCTGCTCAGTCAAGGTAGACGTCGAGAAGCGTACGGTTACAC
TTCCACGGATCTTTTATTGGTATTCTGACGATTTTCCGAGCCCTGAAAAT
AACCTATTGTTGTGGGTGGCCTCATATCTTTCTGTTGAAACATCGCATCA
ACTCGTCACCATCGTGAACGATGATGGGCCACAACCCGTGTTGTCTTATG
CAGACTTTGATTGGTCAAACCCGGAAGCAAGATTTAATGCATCTGTTGTA
CGAAGAAAGCGGAGAAGACTAGAAAGAGAGTGTGATCTCGATGACGGTCA
ACAAGATGCAATTGACCTTAGTCTCCAGATGCACATTGGAGACATGTCCT
CCATATTTTCTGCACAGCCTGGTGCTAGCGAAGACTTGTTCAAGAATAGC
CATATGAGTTCTCCAATGATATTTGCAGCAAACGGATCAAATGAAGTTAA
ACAATCTCCGACGTTGCTCAACAACACGCCAAGCGCTGGAGGTCGATCTC
AGGAAGACTCCTCCAAAAGGTTAACTCCTGATATAATGAATGTAAGCCAG
CCAGAGGCTCCAACCTTGAAGAGTAGTGAAAATGGGTCCAGTACAAAtgc
ggctgctacagctgctgctgccgcCTCACCGGCGTGA