Gchil10002.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10002.t1
Unique NameGchil10002.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length455
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:220669..222033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706874.1
Preferred nameINT6
PFAMsPCI,eIF3_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00006,RC00868,RC00887
KEGG koko:K03250,ko:K19562
KEGG ReactionR03182,R03231
KEGG Pathwayko00780,ko01100,ko03013,ko05160,map00780,map01100,map03013,map05160
KEGG ModuleM00123
GOsGO:0000003,GO:0000184,GO:0000502,GO:0000956,GO:0001732,GO:0002181,GO:0002183,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005852,GO:0005886,GO:0006139,GO:0006351,GO:0006352,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0008104,GO:0008135,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009640,GO:0009651,GO:0009791,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009908,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016282,GO:0016604,GO:0016605,GO:0017148,GO:0018130,GO:0019222,GO:0019438,GO:0019439,GO:0019538,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030162,GO:0030371,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031597,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032434,GO:0032436,GO:0032501,GO:0032502,GO:0032774,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0034248,GO:0034249,GO:0034250,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0042176,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044464,GO:0045182,GO:0045727,GO:0045732,GO:0045862,GO:0045947,GO:0046483,GO:0046700,GO:0047485,GO:0048367,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051099,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051246,GO:0051247,GO:0051248,GO:0051641,GO:0060255,GO:0060341,GO:0061136,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070196,GO:0070727,GO:0070993,GO:0071540,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0090567,GO:0097159,GO:0097659,GO:1900180,GO:1900182,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901800,GO:1902415,GO:1902416,GO:1902494,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903827,GO:1903829,GO:1905214,GO:1905216,GO:1905368,GO:1905369,GO:1990904,GO:2000058,GO:2000060,GO:2000112,GO:2000113
Evalue1.3e-182
EggNOG OGsKOG2758@1|root,KOG2758@2759|Eukaryota
EC2.6.1.62,6.3.3.3
Descriptiontranslation initiation factor activity
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko03051,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10002Gchil10002Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 220669..222033 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10002.t1.stop1Gchil10002.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 220669..220671 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10002.t1.CDS1Gchil10002.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 220669..222033 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10002.t1.exon1Gchil10002.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 220669..222033 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10002.t1.start1Gchil10002.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 222031..222033 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10002.t1Gchil10002.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 220669..222033 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10002.t1 ID=Gchil10002.t1|Name=Gchil10002.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=455bp
MEFDLTSTISEFLDRHLVIPLLDFIEQHPNMAGCFNPQDIMRAKLDLLSN
TGMVDYAIEVHEDLYGTDPPEELVTRRDRVLLALQSLSEDAGPLLKVISD
EKLFAELRNNNSFNLDNLSEAYGVTVDVVEAAYEFGKFQFDCGSYQDTAT
LMQVYRMLMDGSNPERELFALWGKFAADILGHNWDAALEDMNMLREIIDA
TGRHVLLNPLQQLQHRTWLIHWSLFVFFNHRDGRNGIIDLLFSDKYLNTI
QTNCPHVLRYLTTAVITNKKRRGVLKDLVKVIQQEAYAYSDPITEFVEYL
YVNFDFEGAQDMLQNCENTLRQDFFLYNMLDDFLEDARRTIFETYCRIHQ
VIDIGMLASKLNMEKDEAEKWVVNLIRNARLDAKIDSQANQVIMGVSVPS
VYEQVVDSTKNLLIRATVLAQNSDRPHSYNAGGFRGDEDRRSRKGNRRDT
RVTA*
back to top

spliced messenger RNA

>Gchil10002.t1 ID=Gchil10002.t1|Name=Gchil10002.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00004442_pilon:220669..222033- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTTCGACCTAACGAGTACCATCTCGGAGTTTCTGGACCGCCATCT
CGTCATTCCGTTACTGGATTTCATCGAGCAGCATCCCAACATGGCCGGCT
GCTTCAATCCACAAGATATTATGCGCGCAAAACTGGATCTGCTTTCAAAT
ACCGGTATGGTTGACTACGCTATCGAAGTACACGAAGATCTGTACGGAAC
CGATCCTCCAGAGGAACTGGTTACCAGACGTGATCGGGTGCTTCTTGCCT
TGCAAAGCCTAAGCGAGGATGCTGGGCCTCTGTTGAAGGTCATCAGCGAT
GAGAAACTCTTCGCAGAGCTTCGAAATAATAATTCTTTCAATCTTGACAA
TCTTTCTGAGGCCTATGGCGTCACGGTAGATGTAGTAGAAGCAGCGTATG
AGTTTGGAAAGTTTCAATTCGATTGCGGAAGTTATCAGGATACTGCCACG
TTAATGCAGGTGTATCGCATGTTAATGGATGGTTCTAACCCGGAGAGGGA
ACTCTTCGCGTTGTGGGGCAAGTTTGCCGCTGATATTCTCGGCCACAACT
GGGATGCAGCGTTGGAAGACATGAACATGTTGCGCGAAATTATCGACGCT
ACTGGTCGCCATGTTCTGCTCAACCCTTTGCAACAATTGCAACATCGCAC
GTGGCTTATTCATTGGAGTCTCTTTGTTTTCTTTAATCATAGAGACGGTC
GAAATGGCATAATCGACCTTTTGTTCAGCGACAAGTATCTTAACACGATT
CAAACAAATTGTCCCCATGTATTACGATACCTGACAACTGCGGTAATCAC
CAACAAAAAGCGACGAGGTGTGTTGAAGGATTTGGTTAAAGTCATCCAGC
AGGAAGCGTATGCGTATTCGGATCCCATAACAGAATTTGTTGAATACCTT
TATGTCAACTTCGATTTCGAAGGAGCACAAGATATGTTGCAAAACTGCGA
AAACACTCTTAGACAGGACTTTTTCCTCTACAACATGCTGGACGACTTCC
TTGAGGACGCCCGAAGAACGATTTTTGAAACATACTGTCGCATTCATCAA
GTTATCGACATCGGGATGCTTGCCAGCAAGTTAAACATGGAGAAAGATGA
AGCTGAGAAATGGGTCGTGAATCTCATCCGAAACGCTAGGCTGGACGCCA
AGATTGATTCGCAAGCTAATCAGGTTATTATGGGGGTCAGCGTGCCAAGC
GTGTATGAACAAGTTGTCGATTCTACCAAGAACCTGTTGATCCGAGCCAC
GGTTTTGGCTCAGAATTCTGACCGACCACACAGCTACAATGCTGGAGGCT
TCAGAGGAGATGAAGATCGAAGAAGTAGAAAAGGTAATCGAAGAGATACG
CGGGTAACAGCATAA
back to top

protein sequence of Gchil10002.t1

>Gchil10002.t1 ID=Gchil10002.t1|Name=Gchil10002.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=455bp
MEFDLTSTISEFLDRHLVIPLLDFIEQHPNMAGCFNPQDIMRAKLDLLSN
TGMVDYAIEVHEDLYGTDPPEELVTRRDRVLLALQSLSEDAGPLLKVISD
EKLFAELRNNNSFNLDNLSEAYGVTVDVVEAAYEFGKFQFDCGSYQDTAT
LMQVYRMLMDGSNPERELFALWGKFAADILGHNWDAALEDMNMLREIIDA
TGRHVLLNPLQQLQHRTWLIHWSLFVFFNHRDGRNGIIDLLFSDKYLNTI
QTNCPHVLRYLTTAVITNKKRRGVLKDLVKVIQQEAYAYSDPITEFVEYL
YVNFDFEGAQDMLQNCENTLRQDFFLYNMLDDFLEDARRTIFETYCRIHQ
VIDIGMLASKLNMEKDEAEKWVVNLIRNARLDAKIDSQANQVIMGVSVPS
VYEQVVDSTKNLLIRATVLAQNSDRPHSYNAGGFRGDEDRRSRKGNRRDT
RVTA*
back to top

mRNA from alignment at tig00004442_pilon:220669..222033-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10002.t1 ID=Gchil10002.t1|Name=Gchil10002.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00004442_pilon:220669..222033- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGTTCGACCTAACGAGTACCATCTCGGAGTTTCTGGACCGCCATCT
CGTCATTCCGTTACTGGATTTCATCGAGCAGCATCCCAACATGGCCGGCT
GCTTCAATCCACAAGATATTATGCGCGCAAAACTGGATCTGCTTTCAAAT
ACCGGTATGGTTGACTACGCTATCGAAGTACACGAAGATCTGTACGGAAC
CGATCCTCCAGAGGAACTGGTTACCAGACGTGATCGGGTGCTTCTTGCCT
TGCAAAGCCTAAGCGAGGATGCTGGGCCTCTGTTGAAGGTCATCAGCGAT
GAGAAACTCTTCGCAGAGCTTCGAAATAATAATTCTTTCAATCTTGACAA
TCTTTCTGAGGCCTATGGCGTCACGGTAGATGTAGTAGAAGCAGCGTATG
AGTTTGGAAAGTTTCAATTCGATTGCGGAAGTTATCAGGATACTGCCACG
TTAATGCAGGTGTATCGCATGTTAATGGATGGTTCTAACCCGGAGAGGGA
ACTCTTCGCGTTGTGGGGCAAGTTTGCCGCTGATATTCTCGGCCACAACT
GGGATGCAGCGTTGGAAGACATGAACATGTTGCGCGAAATTATCGACGCT
ACTGGTCGCCATGTTCTGCTCAACCCTTTGCAACAATTGCAACATCGCAC
GTGGCTTATTCATTGGAGTCTCTTTGTTTTCTTTAATCATAGAGACGGTC
GAAATGGCATAATCGACCTTTTGTTCAGCGACAAGTATCTTAACACGATT
CAAACAAATTGTCCCCATGTATTACGATACCTGACAACTGCGGTAATCAC
CAACAAAAAGCGACGAGGTGTGTTGAAGGATTTGGTTAAAGTCATCCAGC
AGGAAGCGTATGCGTATTCGGATCCCATAACAGAATTTGTTGAATACCTT
TATGTCAACTTCGATTTCGAAGGAGCACAAGATATGTTGCAAAACTGCGA
AAACACTCTTAGACAGGACTTTTTCCTCTACAACATGCTGGACGACTTCC
TTGAGGACGCCCGAAGAACGATTTTTGAAACATACTGTCGCATTCATCAA
GTTATCGACATCGGGATGCTTGCCAGCAAGTTAAACATGGAGAAAGATGA
AGCTGAGAAATGGGTCGTGAATCTCATCCGAAACGCTAGGCTGGACGCCA
AGATTGATTCGCAAGCTAATCAGGTTATTATGGGGGTCAGCGTGCCAAGC
GTGTATGAACAAGTTGTCGATTCTACCAAGAACCTGTTGATCCGAGCCAC
GGTTTTGGCTCAGAATTCTGACCGACCACACAGCTACAATGCTGGAGGCT
TCAGAGGAGATGAAGATCGAAGAAGTAGAAAAGGTAATCGAAGAGATACG
CGGGTAACAGCATAA
back to top

Coding sequence (CDS) from alignment at tig00004442_pilon:220669..222033-

>Gchil10002.t1 ID=Gchil10002.t1|Name=Gchil10002.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1365bp|location=Sequence derived from alignment at tig00004442_pilon:220669..222033- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGTTCGACCTAACGAGTACCATCTCGGAGTTTCTGGACCGCCATCT
CGTCATTCCGTTACTGGATTTCATCGAGCAGCATCCCAACATGGCCGGCT
GCTTCAATCCACAAGATATTATGCGCGCAAAACTGGATCTGCTTTCAAAT
ACCGGTATGGTTGACTACGCTATCGAAGTACACGAAGATCTGTACGGAAC
CGATCCTCCAGAGGAACTGGTTACCAGACGTGATCGGGTGCTTCTTGCCT
TGCAAAGCCTAAGCGAGGATGCTGGGCCTCTGTTGAAGGTCATCAGCGAT
GAGAAACTCTTCGCAGAGCTTCGAAATAATAATTCTTTCAATCTTGACAA
TCTTTCTGAGGCCTATGGCGTCACGGTAGATGTAGTAGAAGCAGCGTATG
AGTTTGGAAAGTTTCAATTCGATTGCGGAAGTTATCAGGATACTGCCACG
TTAATGCAGGTGTATCGCATGTTAATGGATGGTTCTAACCCGGAGAGGGA
ACTCTTCGCGTTGTGGGGCAAGTTTGCCGCTGATATTCTCGGCCACAACT
GGGATGCAGCGTTGGAAGACATGAACATGTTGCGCGAAATTATCGACGCT
ACTGGTCGCCATGTTCTGCTCAACCCTTTGCAACAATTGCAACATCGCAC
GTGGCTTATTCATTGGAGTCTCTTTGTTTTCTTTAATCATAGAGACGGTC
GAAATGGCATAATCGACCTTTTGTTCAGCGACAAGTATCTTAACACGATT
CAAACAAATTGTCCCCATGTATTACGATACCTGACAACTGCGGTAATCAC
CAACAAAAAGCGACGAGGTGTGTTGAAGGATTTGGTTAAAGTCATCCAGC
AGGAAGCGTATGCGTATTCGGATCCCATAACAGAATTTGTTGAATACCTT
TATGTCAACTTCGATTTCGAAGGAGCACAAGATATGTTGCAAAACTGCGA
AAACACTCTTAGACAGGACTTTTTCCTCTACAACATGCTGGACGACTTCC
TTGAGGACGCCCGAAGAACGATTTTTGAAACATACTGTCGCATTCATCAA
GTTATCGACATCGGGATGCTTGCCAGCAAGTTAAACATGGAGAAAGATGA
AGCTGAGAAATGGGTCGTGAATCTCATCCGAAACGCTAGGCTGGACGCCA
AGATTGATTCGCAAGCTAATCAGGTTATTATGGGGGTCAGCGTGCCAAGC
GTGTATGAACAAGTTGTCGATTCTACCAAGAACCTGTTGATCCGAGCCAC
GGTTTTGGCTCAGAATTCTGACCGACCACACAGCTACAATGCTGGAGGCT
TCAGAGGAGATGAAGATCGAAGAAGTAGAAAAGGTAATCGAAGAGATACG
CGGGTAACAGCATAA
back to top