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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 130081.XP_005706874.1 |
Preferred name | INT6 |
PFAMs | PCI,eIF3_N |
Max annot lvl | 2759|Eukaryota |
KEGG rclass | RC00006,RC00868,RC00887 |
KEGG ko | ko:K03250,ko:K19562 |
KEGG Reaction | R03182,R03231 |
KEGG Pathway | ko00780,ko01100,ko03013,ko05160,map00780,map01100,map03013,map05160 |
KEGG Module | M00123 |
GOs | GO:0000003,GO:0000184,GO:0000502,GO:0000956,GO:0001732,GO:0002181,GO:0002183,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005852,GO:0005886,GO:0006139,GO:0006351,GO:0006352,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0008104,GO:0008135,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009640,GO:0009651,GO:0009791,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009908,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016282,GO:0016604,GO:0016605,GO:0017148,GO:0018130,GO:0019222,GO:0019438,GO:0019439,GO:0019538,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030162,GO:0030371,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031597,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032434,GO:0032436,GO:0032501,GO:0032502,GO:0032774,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0034248,GO:0034249,GO:0034250,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0042176,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044464,GO:0045182,GO:0045727,GO:0045732,GO:0045862,GO:0045947,GO:0046483,GO:0046700,GO:0047485,GO:0048367,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051099,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051246,GO:0051247,GO:0051248,GO:0051641,GO:0060255,GO:0060341,GO:0061136,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070196,GO:0070727,GO:0070993,GO:0071540,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0090567,GO:0097159,GO:0097659,GO:1900180,GO:1900182,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901800,GO:1902415,GO:1902416,GO:1902494,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903827,GO:1903829,GO:1905214,GO:1905216,GO:1905368,GO:1905369,GO:1990904,GO:2000058,GO:2000060,GO:2000112,GO:2000113 |
Evalue | 1.3e-182 |
EggNOG OGs | KOG2758@1|root,KOG2758@2759|Eukaryota |
EC | 2.6.1.62,6.3.3.3 |
Description | translation initiation factor activity |
COG category | J |
BRITE | ko00000,ko00001,ko00002,ko01000,ko03012,ko03051,ko04147 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil10002.t1 ID=Gchil10002.t1|Name=Gchil10002.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=455bp MEFDLTSTISEFLDRHLVIPLLDFIEQHPNMAGCFNPQDIMRAKLDLLSN TGMVDYAIEVHEDLYGTDPPEELVTRRDRVLLALQSLSEDAGPLLKVISD EKLFAELRNNNSFNLDNLSEAYGVTVDVVEAAYEFGKFQFDCGSYQDTAT LMQVYRMLMDGSNPERELFALWGKFAADILGHNWDAALEDMNMLREIIDA TGRHVLLNPLQQLQHRTWLIHWSLFVFFNHRDGRNGIIDLLFSDKYLNTI QTNCPHVLRYLTTAVITNKKRRGVLKDLVKVIQQEAYAYSDPITEFVEYL YVNFDFEGAQDMLQNCENTLRQDFFLYNMLDDFLEDARRTIFETYCRIHQ VIDIGMLASKLNMEKDEAEKWVVNLIRNARLDAKIDSQANQVIMGVSVPS VYEQVVDSTKNLLIRATVLAQNSDRPHSYNAGGFRGDEDRRSRKGNRRDT RVTA* back to topspliced messenger RNA >Gchil10002.t1 ID=Gchil10002.t1|Name=Gchil10002.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00004442_pilon:220669..222033- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGAGTTCGACCTAACGAGTACCATCTCGGAGTTTCTGGACCGCCATCT CGTCATTCCGTTACTGGATTTCATCGAGCAGCATCCCAACATGGCCGGCT GCTTCAATCCACAAGATATTATGCGCGCAAAACTGGATCTGCTTTCAAAT ACCGGTATGGTTGACTACGCTATCGAAGTACACGAAGATCTGTACGGAAC CGATCCTCCAGAGGAACTGGTTACCAGACGTGATCGGGTGCTTCTTGCCT TGCAAAGCCTAAGCGAGGATGCTGGGCCTCTGTTGAAGGTCATCAGCGAT GAGAAACTCTTCGCAGAGCTTCGAAATAATAATTCTTTCAATCTTGACAA TCTTTCTGAGGCCTATGGCGTCACGGTAGATGTAGTAGAAGCAGCGTATG AGTTTGGAAAGTTTCAATTCGATTGCGGAAGTTATCAGGATACTGCCACG TTAATGCAGGTGTATCGCATGTTAATGGATGGTTCTAACCCGGAGAGGGA ACTCTTCGCGTTGTGGGGCAAGTTTGCCGCTGATATTCTCGGCCACAACT GGGATGCAGCGTTGGAAGACATGAACATGTTGCGCGAAATTATCGACGCT ACTGGTCGCCATGTTCTGCTCAACCCTTTGCAACAATTGCAACATCGCAC GTGGCTTATTCATTGGAGTCTCTTTGTTTTCTTTAATCATAGAGACGGTC GAAATGGCATAATCGACCTTTTGTTCAGCGACAAGTATCTTAACACGATT CAAACAAATTGTCCCCATGTATTACGATACCTGACAACTGCGGTAATCAC CAACAAAAAGCGACGAGGTGTGTTGAAGGATTTGGTTAAAGTCATCCAGC AGGAAGCGTATGCGTATTCGGATCCCATAACAGAATTTGTTGAATACCTT TATGTCAACTTCGATTTCGAAGGAGCACAAGATATGTTGCAAAACTGCGA AAACACTCTTAGACAGGACTTTTTCCTCTACAACATGCTGGACGACTTCC TTGAGGACGCCCGAAGAACGATTTTTGAAACATACTGTCGCATTCATCAA GTTATCGACATCGGGATGCTTGCCAGCAAGTTAAACATGGAGAAAGATGA AGCTGAGAAATGGGTCGTGAATCTCATCCGAAACGCTAGGCTGGACGCCA AGATTGATTCGCAAGCTAATCAGGTTATTATGGGGGTCAGCGTGCCAAGC GTGTATGAACAAGTTGTCGATTCTACCAAGAACCTGTTGATCCGAGCCAC GGTTTTGGCTCAGAATTCTGACCGACCACACAGCTACAATGCTGGAGGCT TCAGAGGAGATGAAGATCGAAGAAGTAGAAAAGGTAATCGAAGAGATACG CGGGTAACAGCATAA back to topprotein sequence of Gchil10002.t1 >Gchil10002.t1 ID=Gchil10002.t1|Name=Gchil10002.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=455bp
MEFDLTSTISEFLDRHLVIPLLDFIEQHPNMAGCFNPQDIMRAKLDLLSN TGMVDYAIEVHEDLYGTDPPEELVTRRDRVLLALQSLSEDAGPLLKVISD EKLFAELRNNNSFNLDNLSEAYGVTVDVVEAAYEFGKFQFDCGSYQDTAT LMQVYRMLMDGSNPERELFALWGKFAADILGHNWDAALEDMNMLREIIDA TGRHVLLNPLQQLQHRTWLIHWSLFVFFNHRDGRNGIIDLLFSDKYLNTI QTNCPHVLRYLTTAVITNKKRRGVLKDLVKVIQQEAYAYSDPITEFVEYL YVNFDFEGAQDMLQNCENTLRQDFFLYNMLDDFLEDARRTIFETYCRIHQ VIDIGMLASKLNMEKDEAEKWVVNLIRNARLDAKIDSQANQVIMGVSVPS VYEQVVDSTKNLLIRATVLAQNSDRPHSYNAGGFRGDEDRRSRKGNRRDT RVTA* back to topmRNA from alignment at tig00004442_pilon:220669..222033- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil10002.t1 ID=Gchil10002.t1|Name=Gchil10002.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00004442_pilon:220669..222033- (Gracilaria chilensis NLEC103_M9 male) ATGGAGTTCGACCTAACGAGTACCATCTCGGAGTTTCTGGACCGCCATCT
CGTCATTCCGTTACTGGATTTCATCGAGCAGCATCCCAACATGGCCGGCT
GCTTCAATCCACAAGATATTATGCGCGCAAAACTGGATCTGCTTTCAAAT
ACCGGTATGGTTGACTACGCTATCGAAGTACACGAAGATCTGTACGGAAC
CGATCCTCCAGAGGAACTGGTTACCAGACGTGATCGGGTGCTTCTTGCCT
TGCAAAGCCTAAGCGAGGATGCTGGGCCTCTGTTGAAGGTCATCAGCGAT
GAGAAACTCTTCGCAGAGCTTCGAAATAATAATTCTTTCAATCTTGACAA
TCTTTCTGAGGCCTATGGCGTCACGGTAGATGTAGTAGAAGCAGCGTATG
AGTTTGGAAAGTTTCAATTCGATTGCGGAAGTTATCAGGATACTGCCACG
TTAATGCAGGTGTATCGCATGTTAATGGATGGTTCTAACCCGGAGAGGGA
ACTCTTCGCGTTGTGGGGCAAGTTTGCCGCTGATATTCTCGGCCACAACT
GGGATGCAGCGTTGGAAGACATGAACATGTTGCGCGAAATTATCGACGCT
ACTGGTCGCCATGTTCTGCTCAACCCTTTGCAACAATTGCAACATCGCAC
GTGGCTTATTCATTGGAGTCTCTTTGTTTTCTTTAATCATAGAGACGGTC
GAAATGGCATAATCGACCTTTTGTTCAGCGACAAGTATCTTAACACGATT
CAAACAAATTGTCCCCATGTATTACGATACCTGACAACTGCGGTAATCAC
CAACAAAAAGCGACGAGGTGTGTTGAAGGATTTGGTTAAAGTCATCCAGC
AGGAAGCGTATGCGTATTCGGATCCCATAACAGAATTTGTTGAATACCTT
TATGTCAACTTCGATTTCGAAGGAGCACAAGATATGTTGCAAAACTGCGA
AAACACTCTTAGACAGGACTTTTTCCTCTACAACATGCTGGACGACTTCC
TTGAGGACGCCCGAAGAACGATTTTTGAAACATACTGTCGCATTCATCAA
GTTATCGACATCGGGATGCTTGCCAGCAAGTTAAACATGGAGAAAGATGA
AGCTGAGAAATGGGTCGTGAATCTCATCCGAAACGCTAGGCTGGACGCCA
AGATTGATTCGCAAGCTAATCAGGTTATTATGGGGGTCAGCGTGCCAAGC
GTGTATGAACAAGTTGTCGATTCTACCAAGAACCTGTTGATCCGAGCCAC
GGTTTTGGCTCAGAATTCTGACCGACCACACAGCTACAATGCTGGAGGCT
TCAGAGGAGATGAAGATCGAAGAAGTAGAAAAGGTAATCGAAGAGATACG
CGGGTAACAGCATAA back to topCoding sequence (CDS) from alignment at tig00004442_pilon:220669..222033- >Gchil10002.t1 ID=Gchil10002.t1|Name=Gchil10002.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1365bp|location=Sequence derived from alignment at tig00004442_pilon:220669..222033- (Gracilaria chilensis NLEC103_M9 male) ATGGAGTTCGACCTAACGAGTACCATCTCGGAGTTTCTGGACCGCCATCT CGTCATTCCGTTACTGGATTTCATCGAGCAGCATCCCAACATGGCCGGCT GCTTCAATCCACAAGATATTATGCGCGCAAAACTGGATCTGCTTTCAAAT ACCGGTATGGTTGACTACGCTATCGAAGTACACGAAGATCTGTACGGAAC CGATCCTCCAGAGGAACTGGTTACCAGACGTGATCGGGTGCTTCTTGCCT TGCAAAGCCTAAGCGAGGATGCTGGGCCTCTGTTGAAGGTCATCAGCGAT GAGAAACTCTTCGCAGAGCTTCGAAATAATAATTCTTTCAATCTTGACAA TCTTTCTGAGGCCTATGGCGTCACGGTAGATGTAGTAGAAGCAGCGTATG AGTTTGGAAAGTTTCAATTCGATTGCGGAAGTTATCAGGATACTGCCACG TTAATGCAGGTGTATCGCATGTTAATGGATGGTTCTAACCCGGAGAGGGA ACTCTTCGCGTTGTGGGGCAAGTTTGCCGCTGATATTCTCGGCCACAACT GGGATGCAGCGTTGGAAGACATGAACATGTTGCGCGAAATTATCGACGCT ACTGGTCGCCATGTTCTGCTCAACCCTTTGCAACAATTGCAACATCGCAC GTGGCTTATTCATTGGAGTCTCTTTGTTTTCTTTAATCATAGAGACGGTC GAAATGGCATAATCGACCTTTTGTTCAGCGACAAGTATCTTAACACGATT CAAACAAATTGTCCCCATGTATTACGATACCTGACAACTGCGGTAATCAC CAACAAAAAGCGACGAGGTGTGTTGAAGGATTTGGTTAAAGTCATCCAGC AGGAAGCGTATGCGTATTCGGATCCCATAACAGAATTTGTTGAATACCTT TATGTCAACTTCGATTTCGAAGGAGCACAAGATATGTTGCAAAACTGCGA AAACACTCTTAGACAGGACTTTTTCCTCTACAACATGCTGGACGACTTCC TTGAGGACGCCCGAAGAACGATTTTTGAAACATACTGTCGCATTCATCAA GTTATCGACATCGGGATGCTTGCCAGCAAGTTAAACATGGAGAAAGATGA AGCTGAGAAATGGGTCGTGAATCTCATCCGAAACGCTAGGCTGGACGCCA AGATTGATTCGCAAGCTAATCAGGTTATTATGGGGGTCAGCGTGCCAAGC GTGTATGAACAAGTTGTCGATTCTACCAAGAACCTGTTGATCCGAGCCAC GGTTTTGGCTCAGAATTCTGACCGACCACACAGCTACAATGCTGGAGGCT TCAGAGGAGATGAAGATCGAAGAAGTAGAAAAGGTAATCGAAGAGATACG CGGGTAACAGCATAA back to top
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