Gcaud9179.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9179.t1
Unique NameGcaud9179.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length168
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3651_length_3124_cov_5.715134contigNODE_3651_length_3124_cov_5.715134:2557..3060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9179Gcaud9179Gracilaria caudata M_176_S67 malegeneNODE_3651_length_3124_cov_5.715134 2557..3060 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9179.t1.stop1Gcaud9179.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_3651_length_3124_cov_5.715134 2557..2559 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9179.t1.CDS1Gcaud9179.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_3651_length_3124_cov_5.715134 2557..3060 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9179.t1.exon1Gcaud9179.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_3651_length_3124_cov_5.715134 2557..3060 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9179.t1.start1Gcaud9179.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_3651_length_3124_cov_5.715134 3058..3060 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9179.t1Gcaud9179.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_3651_length_3124_cov_5.715134 2557..3060 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9179.t1 ID=Gcaud9179.t1|Name=Gcaud9179.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=168bp
MNASSLEHLYRGCDSLLYISSTAPMKERVWSVMKYRQLGKHGNGSLSDAQ
MNQAASDLEKDDKQVKLLNSYPFWKDMDTALDIQGIERPKPDYVIRKSKL
TRELSDLLQTLQCDTDVKSDNIHSADDRGLSNDFEIDDNDELHRRMVRRA
ERHNQKGLKKALKFSKR*
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spliced messenger RNA

>Gcaud9179.t1 ID=Gcaud9179.t1|Name=Gcaud9179.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=504bp|location=Sequence derived from alignment at NODE_3651_length_3124_cov_5.715134:2557..3060- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGCTTCATCATTAGAACATCTGTATAGGGGATGTGATTCGCTTCT
GTATATTTCGTCAACAGCGCCTATGAAAGAGCGAGTATGGTCCGTCATGA
AGTATCGACAGCTTGGAAAGCATGGAAACGGGTCTCTAAGTGATGCTCAA
ATGAATCAGGCTGCTTCAGATCTTGAGAAAGATGACAAGCAGGTAAAGCT
CTTGAATTCTTATCCCTTTTGGAAGGATATGGACACCGCTCTTGACATTC
AAGGAATTGAGAGACCCAAACCGGATTACGTGATTCGAAAATCTAAATTG
ACACGGGAACTTTCGGATTTGCTACAAACGCTTCAGTGTGATACAGATGT
TAAGAGCGATAATATTCACAGTGCTGATGACAGGGGCTTGTCGAATGATT
TCGAGATTGATGACAACGATGAATTGCATCGCCGCATGGTCCGTCGTGCA
GAGAGACACAATCAAAAGGGATTGAAGAAGGCGCTCAAGTTCTCCAAGCG
ATGA
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protein sequence of Gcaud9179.t1

>Gcaud9179.t1 ID=Gcaud9179.t1|Name=Gcaud9179.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=168bp
MNASSLEHLYRGCDSLLYISSTAPMKERVWSVMKYRQLGKHGNGSLSDAQ
MNQAASDLEKDDKQVKLLNSYPFWKDMDTALDIQGIERPKPDYVIRKSKL
TRELSDLLQTLQCDTDVKSDNIHSADDRGLSNDFEIDDNDELHRRMVRRA
ERHNQKGLKKALKFSKR*
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mRNA from alignment at NODE_3651_length_3124_cov_5.715134:2557..3060-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9179.t1 ID=Gcaud9179.t1|Name=Gcaud9179.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=504bp|location=Sequence derived from alignment at NODE_3651_length_3124_cov_5.715134:2557..3060- (Gracilaria caudata M_176_S67 male)
ATGAATGCTTCATCATTAGAACATCTGTATAGGGGATGTGATTCGCTTCT
GTATATTTCGTCAACAGCGCCTATGAAAGAGCGAGTATGGTCCGTCATGA
AGTATCGACAGCTTGGAAAGCATGGAAACGGGTCTCTAAGTGATGCTCAA
ATGAATCAGGCTGCTTCAGATCTTGAGAAAGATGACAAGCAGGTAAAGCT
CTTGAATTCTTATCCCTTTTGGAAGGATATGGACACCGCTCTTGACATTC
AAGGAATTGAGAGACCCAAACCGGATTACGTGATTCGAAAATCTAAATTG
ACACGGGAACTTTCGGATTTGCTACAAACGCTTCAGTGTGATACAGATGT
TAAGAGCGATAATATTCACAGTGCTGATGACAGGGGCTTGTCGAATGATT
TCGAGATTGATGACAACGATGAATTGCATCGCCGCATGGTCCGTCGTGCA
GAGAGACACAATCAAAAGGGATTGAAGAAGGCGCTCAAGTTCTCCAAGCG
ATGA
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Coding sequence (CDS) from alignment at NODE_3651_length_3124_cov_5.715134:2557..3060-

>Gcaud9179.t1 ID=Gcaud9179.t1|Name=Gcaud9179.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=504bp|location=Sequence derived from alignment at NODE_3651_length_3124_cov_5.715134:2557..3060- (Gracilaria caudata M_176_S67 male)
ATGAATGCTTCATCATTAGAACATCTGTATAGGGGATGTGATTCGCTTCT
GTATATTTCGTCAACAGCGCCTATGAAAGAGCGAGTATGGTCCGTCATGA
AGTATCGACAGCTTGGAAAGCATGGAAACGGGTCTCTAAGTGATGCTCAA
ATGAATCAGGCTGCTTCAGATCTTGAGAAAGATGACAAGCAGGTAAAGCT
CTTGAATTCTTATCCCTTTTGGAAGGATATGGACACCGCTCTTGACATTC
AAGGAATTGAGAGACCCAAACCGGATTACGTGATTCGAAAATCTAAATTG
ACACGGGAACTTTCGGATTTGCTACAAACGCTTCAGTGTGATACAGATGT
TAAGAGCGATAATATTCACAGTGCTGATGACAGGGGCTTGTCGAATGATT
TCGAGATTGATGACAACGATGAATTGCATCGCCGCATGGTCCGTCGTGCA
GAGAGACACAATCAAAAGGGATTGAAGAAGGCGCTCAAGTTCTCCAAGCG
ATGA
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