Gcaud1661.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1661.t1
Unique NameGcaud1661.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length596
Homology
BLAST of Gcaud1661.t1 vs. uniprot
Match: A0A2V3IXP8_9FLOR (Pre-mRNA 3'-end-processing factor FIP1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXP8_9FLOR)

HSP 1 Score: 365 bits (936), Expect = 6.350e-115
Identity = 272/520 (52.31%), Postives = 303/520 (58.27%), Query Frame = 0
Query:    1 MTTATDVAEEDLELYGEPVPESPSIVKTEGLIAVSEEKSVPAITDSHQTSKNEDVPLTLSTSAPSKEPLPSENRNEIDKGKQESNGSPDGFQSTEPEQLDKQSKDAGIPKNAVTEGSVKEEQGDNAG------QEGNQSEGD---------KTANLSKTAKDEEAGXXXXXXXXXXXXXXXXX-----FDVILNVDEADVSSRPMNTSFGSIGKVRLGTNKWQRPGYVPPERVIGNASQGAARTGGLLSMLPTPTMQVGNAQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDGNKNQTSNAPRNVNQNAAKPPVNQQHGNRNRMGAPDQVGGVVNNKHGHQPAMLHGMMGMPPPGSMQPMMG-------MPNMP-NMRNPPEHLPGLPQNMHQFPPFNPKDANPNGRGYAGPIPGYPFMPGNQPNENM------FLYHGVPNFG-AMGIPNAMPQGGMGRGDN--RGFPGQMNMNPGQPPQDKL-NKISP 482
            M T  ++AEEDLELYGEPVPESP        +   +E+S     +S    +N       S   P   P P   + E     Q +  +PD  ++ + E            K A+  G+V++E G + G      QE   S  D         K A+     KD   G  XXXXXXXXXXXXXXX     FDVILNVD+ADV+SRP NTSFGSIGKVRLGTNKWQRPGYVPPERVIGN+SQGAARTGGLLSMLPTPTMQVGNAQKSVYDLEIGKLTEKPWLDAKAD+TDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDGNK Q  N  R VN +  KP   QQH  R R    DQ     N K   QP M       PPPG M            MPN+P NMRNP             F PF+P D    GRG+  P P YP M   Q NENM      F        G  M +P  +P  GMGRGD   RGFPGQM M   Q PQDK  ++ISP
Sbjct:    1 MATTAELAEEDLELYGEPVPESP--------VKAGKEESGQVKDESLPGEQN------ASNGIPDDPPHPITGQKET--ASQAAQCAPDSIKTDDGE------------KGAL--GTVRDETGGSNGTLEEVPQENQLSGNDDKTMAQKIEKNADNGDNQKDTNTGENXXXXXXXXXXXXXXXXXXXDFDVILNVDDADVASRPANTSFGSIGKVRLGTNKWQRPGYVPPERVIGNSSQGAARTGGLLSMLPTPTMQVGNAQKSVYDLEIGKLTEKPWLDAKADLTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDGNKTQAGNTVRTVNPSPVKPSQTQQHAPRGRPTGQDQAIAAPNTKLPQQPPM-------PPPGMMPXXXXXXXXXXXMPNIPGNMRNPXXXX-XXXXXXXXF-PFHPSDPAGKGRGFTPPFPSYPPMQNGQRNENMKNNMFPFXXXXXXXXGMGMPMPGTVPPPGMGRGDGTGRGFPGQMAMGNNQQPQDKHGSRISP 481          
BLAST of Gcaud1661.t1 vs. uniprot
Match: R7QHW7_CHOCR (Fip1 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHW7_CHOCR)

HSP 1 Score: 158 bits (400), Expect = 6.870e-39
Identity = 117/275 (42.55%), Postives = 143/275 (52.00%), Query Frame = 0
Query:  214 IGNASQGAARTGGLLSMLPTPTMQVGNAQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDGNKNQTSNAPRNVNQNAAKPPVNQQHGNRNRMG---APDQVGGVVNNKHGHQPAMLHGMMGMPPPGSMQ-----PMMGMPNMPNMRNPPEHLPGLPQNMHQFPPFNPKDANPNGRGYAGPIPGYPFMP------GNQPNENMF--------LYHGVPNFGAMGIPNAMPQGGMGRGDN--RGFPGQ 464
            +GN  Q   R GG+LSMLPTPTMQ+G +QKSVYD+EIGK TEKPWL+  AD++DYFNYGF EE+WK+YCERQ QMRLE SMLAKIKTVDGNK+ ++ A + + Q   K  + QQ+G     G   A  + G           A      G+P           P+ GMP M  M + P     +P NM  F PF P   N  G  +  P P            G  P   MF        +  G+P    M  P       MGRG +  RGFPGQ
Sbjct:    1 MGNTMQSGGRAGGMLSMLPTPTMQIGVSQKSVYDMEIGKQTEKPWLERGADLSDYFNYGFNEESWKMYCERQMQMRLEDSMLAKIKTVDGNKSVSAAAGQRLPQLGQKITLPQQNGVARTAGMLAAAVRAGVQAKVAKPAVAAAPSAGQGVPXXXXXXXXXXGPLPGMPGMMKMGDMP-----MPPNMPPF-PFQPGMLNGKGGAFQHPFPXXXXXXAQRQGDGKNPTPPMFPXXXXMPGMPPGMPXXXXM--PXXXXXXXMGRGGSHGRGFPGQ 267          
BLAST of Gcaud1661.t1 vs. uniprot
Match: A0A6T6N6Z9_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A6T6N6Z9_9RHOD)

HSP 1 Score: 130 bits (327), Expect = 5.790e-31
Identity = 72/130 (55.38%), Postives = 86/130 (66.15%), Query Frame = 0
Query:  181 SSRPMNTSFGSIGKVRLGTNKWQRPGYVPPE-RVIGNASQGAARTGGLLSMLPTPTMQVGNA-----QKSVYD---LEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTV 301
            +S  ++T  G +G     TN+WQRPG V     V+G+       +GGLLSMLP PT+          QKSVY+   LEI KL EKPW +  AD+T+YFNYGFTEETWKLYCERQ QMRLE +MLAKIKTV
Sbjct:   71 ASGNIDTIGGGVGVKFGATNRWQRPGVVSGSGNVMGSGVXXXXXSGGLLSMLPVPTLNQSGIHGVTQQKSVYEFKMLEISKLAEKPWRERGADITEYFNYGFTEETWKLYCERQLQMRLESTMLAKIKTV 200          
BLAST of Gcaud1661.t1 vs. uniprot
Match: A0A5J4Z2U3_PORPP (Pre-mRNA 3'-end-processing factor FIP1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2U3_PORPP)

HSP 1 Score: 136 bits (342), Expect = 1.230e-30
Identity = 100/218 (45.87%), Postives = 118/218 (54.13%), Query Frame = 0
Query:  171 VILNVDEA--DVSSRPMNTSFGSIGKVRLGTNKWQRPGYVPPERVIGNASQGA---ARTGGLLSMLPTPTMQVGNAQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDGNKNQTSNAPRNVNQNAAKPPVNQQHGNRNRMGAPDQVGGVVNNKHGHQP-AMLHGMM-GMPPPGSM-QPMMGM--PNMPN 378
            V+LN   A  DV++ P N   G+  K   G NKWQRPG   P    G    G    A   GLLSMLPTPT+ +    +SVYD+EIG+L EKPW +  AD+T+YFNYGFTEETWK+YCERQ QMRLE +  AKIKT       T N P                G  N  GAP+  GG+     G  P  +  GMM G PP G M  P  GM  P MP+
Sbjct:  102 VVLNAPGAVGDVAADP-NAPRGASVKFAAGVNKWQRPGNAAPGGASGAMPGGVXXXAAPPGLLSMLPTPTVNMPLHARSVYDIEIGRLAEKPWRERGADITEYFNYGFTEETWKVYCERQMQMRLESAGTAKIKTQAA----TENWP----------------GIANSDGAPNIDGGMGPKPPGPMPLGVPPGMMPGFPPMGGMAMPPFGMMMPAMPH 298          
BLAST of Gcaud1661.t1 vs. uniprot
Match: A0A1X6PAB0_PORUM (Fip1 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PAB0_PORUM)

HSP 1 Score: 127 bits (320), Expect = 2.030e-27
Identity = 61/79 (77.22%), Postives = 68/79 (86.08%), Query Frame = 0
Query:  225 GGLLSMLPTPTMQVGNAQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDG 303
            G +L+MLPTPTM VG  Q+SVYDLEIGKL EKPW D  AD+T+YFNYGFTEETW+LYCERQ QMRLE SMLAKIK +DG
Sbjct:  310 GNILAMLPTPTMNVGANQRSVYDLEIGKLPEKPWRDRGADITEYFNYGFTEETWRLYCERQMQMRLEASMLAKIK-IDG 387          
BLAST of Gcaud1661.t1 vs. uniprot
Match: M2W1X7_GALSU (Fip1 domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W1X7_GALSU)

HSP 1 Score: 93.6 bits (231), Expect = 1.390e-17
Identity = 53/142 (37.32%), Postives = 76/142 (53.52%), Query Frame = 0
Query:  176 DEADVSSRPMNTSFGSIGKVRLGTNK-----------WQRPGYVPPER--VIGNASQGAARTGGLLSMLPTPTMQVGNAQK--SVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVD 302
            D+ ++   P +T +G  G    G +K           WQRPGY       ++G+     +R G  LS++P P      A    SV++ EI  L EKPW +  A+++DYFNYGFTE+TW+ YC RQ+ MRL    L  I+T+D
Sbjct:   51 DDVNIVLEPSSTYYG--GDTSTGDSKGLFVGGTTTRHWQRPGYSSTAEGGIVGSGVSAYSRGGVDLSLVPKPPTDFPGAHVDYSVFENEIDSLEEKPWREKGAELSDYFNYGFTEDTWREYCRRQQMMRLYSQSLMPIRTLD 190          
BLAST of Gcaud1661.t1 vs. uniprot
Match: A0A3S3P8U4_9ACAR (Pre-mRNA 3'-end-processing factor FIP1 n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3P8U4_9ACAR)

HSP 1 Score: 92.4 bits (228), Expect = 5.230e-16
Identity = 50/112 (44.64%), Postives = 67/112 (59.82%), Query Frame = 0
Query:  181 SSRPMNTSFGSIGKVRLGTNKWQRPGYVPPERVIGNASQGAARTGGLLSMLPTPTMQVGNAQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEV 292
            S+ P ++S+ S   V L   K + P + P  +V   AS    +T GL        + + N   S+YDL +  L EKPW    AD+TDYFNYGFTEETWK+YCERQK++RLE+
Sbjct:  113 STTPPSSSYNSYAPVNLNIGK-RGPAFGPGGQVTNAASAAKGKTSGL----DIDAVGLYNGG-SIYDLNLDALEEKPWRKPGADITDYFNYGFTEETWKIYCERQKKLRLEL 218          
BLAST of Gcaud1661.t1 vs. uniprot
Match: A0A3S3P8L1_9ACAR (Pre-mRNA 3'-end-processing factor FIP1 n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3P8L1_9ACAR)

HSP 1 Score: 89.7 bits (221), Expect = 1.080e-15
Identity = 48/112 (42.86%), Postives = 66/112 (58.93%), Query Frame = 0
Query:  181 SSRPMNTSFGSIGKVRLGTNKWQRPGYVPPERVIGNASQGAARTGGLLSMLPTPTMQVGNAQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEV 292
            S+ P ++S+ S   V L   K + P + P  +V   AS    +  GL        + + N   S+YDL +  L EKPW    AD+TDYFNYGFTEETWK+YCERQK++R+E+
Sbjct:   29 STTPPSSSYNSYAPVNLNIGK-RGPAFGPGGQVTNAASAAKGKASGL----DIDAVGLYNGG-SIYDLNLDALEEKPWRKPGADITDYFNYGFTEETWKIYCERQKKLRIEL 134          
BLAST of Gcaud1661.t1 vs. uniprot
Match: A0A8J4PYA9_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PYA9_9MYCE)

HSP 1 Score: 89.4 bits (220), Expect = 2.850e-15
Identity = 54/137 (39.42%), Postives = 76/137 (55.47%), Query Frame = 0
Query:  170 DVILNVDEADVSSRPMNTSFGSIGKVRLGTNKWQRPGYVPPERVIGNASQGAARTGGLLSMLPTPTMQVGNAQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDGNKN 306
            +++L+ +  + + R   T+F + GK     N ++ P  + P   IG     A +T    +  PT       AQK++YD++I    +KPWL   AD+TDYFNY FTEETWK YCERQ QMR E+S   KIK  +   N
Sbjct:   73 NIVLDTESVE-AGRATGTAFRTPGK-----NYFRNPTSITPG--IGAKYSLAKQT----TSYPTSNRP---AQKTIYDVDIESFEDKPWLKPGADITDYFNYNFTEETWKAYCERQNQMRAELSNQGKIKGYESKNN 194          
BLAST of Gcaud1661.t1 vs. uniprot
Match: UPI0006448934 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006448934)

HSP 1 Score: 89.0 bits (219), Expect = 3.550e-15
Identity = 47/110 (42.73%), Postives = 63/110 (57.27%), Query Frame = 0
Query:  200 NKWQRPGYVPPERVIGNASQGAARTGGLLSMLPTPTMQ--VGNAQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDGNKNQ 307
            NK  +    P    + N +     TGG  S++     Q      QKS+YD+ +  L +KPW    AD+TDYFNY FTEETW++YCERQ Q+R E + L KIK+ +  KNQ
Sbjct:   86 NKTTKSSSGPKAGFLRNPTSITPGTGGKYSLVKQANTQYQANRPQKSIYDVNLDSLEDKPWNKPGADITDYFNYNFTEETWRMYCERQNQLRAEQANLGKIKSYES-KNQ 194          
The following BLAST results are available for this feature:
BLAST of Gcaud1661.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IXP8_9FLOR6.350e-11552.31Pre-mRNA 3'-end-processing factor FIP1 n=1 Tax=Gra... [more]
R7QHW7_CHOCR6.870e-3942.55Fip1 domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A6T6N6Z9_9RHOD5.790e-3155.38Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5J4Z2U3_PORPP1.230e-3045.87Pre-mRNA 3'-end-processing factor FIP1 n=1 Tax=Por... [more]
A0A1X6PAB0_PORUM2.030e-2777.22Fip1 domain-containing protein n=1 Tax=Porphyra um... [more]
M2W1X7_GALSU1.390e-1737.32Fip1 domain-containing protein n=1 Tax=Galdieria s... [more]
A0A3S3P8U4_9ACAR5.230e-1644.64Pre-mRNA 3'-end-processing factor FIP1 n=1 Tax=Din... [more]
A0A3S3P8L1_9ACAR1.080e-1542.86Pre-mRNA 3'-end-processing factor FIP1 n=1 Tax=Din... [more]
A0A8J4PYA9_9MYCE2.850e-1539.42Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
UPI00064489343.550e-1542.73hypothetical protein n=1 Tax=Acytostelium subglobo... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007854Pre-mRNA polyadenylation factor Fip1 domainPFAMPF05182Fip1coord: 247..289
e-value: 5.8E-19
score: 67.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 124..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 304..333
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..170
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..170
NoneNo IPR availablePANTHERPTHR36884:SF4FIP1[III]-LIKE PROTEINcoord: 243..331
IPR044976FIPS3/FIPS5-likePANTHERPTHR36884FIP1[III]-LIKE PROTEINcoord: 243..331

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_34_length_72082_cov_4.421108contigNODE_34_length_72082_cov_4.421108:61840..63869 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1661.t1Gcaud1661.t1Gracilaria caudata M_176_S67 malemRNANODE_34_length_72082_cov_4.421108 61840..63869 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1661.t1 ID=Gcaud1661.t1|Name=Gcaud1661.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=596bp
MTTATDVAEEDLELYGEPVPESPSIVKTEGLIAVSEEKSVPAITDSHQTS
KNEDVPLTLSTSAPSKEPLPSENRNEIDKGKQESNGSPDGFQSTEPEQLD
KQSKDAGIPKNAVTEGSVKEEQGDNAGQEGNQSEGDKTANLSKTAKDEEA
GEDEEDEEEEEDESDDDDFDVILNVDEADVSSRPMNTSFGSIGKVRLGTN
KWQRPGYVPPERVIGNASQGAARTGGLLSMLPTPTMQVGNAQKSVYDLEI
GKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKT
VDGNKNQTSNAPRNVNQNAAKPPVNQQHGNRNRMGAPDQVGGVVNNKHGH
QPAMLHGMMGMPPPGSMQPMMGMPNMPNMRNPPEHLPGLPQNMHQFPPFN
PKDANPNGRGYAGPIPGYPFMPGNQPNENMFLYHGVPNFGAMGIPNAMPQ
GGMGRGDNRGFPGQMNMNPGQPPQDKLNKISPEGKANLIKEDMTTTEGSD
GEITEGTRIEGRILTGGDGMIVETTDMITVDAVVETMTVPEGPTIEETTT
GIATEEGTIGSDSRLQEISMMTENGQEDDWIHLGAEVFDRDKERA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007854Fip1_dom
IPR044976FIPS3/FIPS5-like