Gcaud1661.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1661.t1
Unique Name	Gcaud1661.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	596

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_34_length_72082_cov_4.421108	contig	NODE_34_length_72082_cov_4.421108:61840..63869 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706206.1
Preferred name	FIP1
PFAMs	Fip1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14405
KEGG Pathway	ko03015,map03015
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005847,GO:0005849,GO:0006139,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006398,GO:0006725,GO:0006807,GO:0008092,GO:0008150,GO:0008152,GO:0008334,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0017022,GO:0030674,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0042221,GO:0042493,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0060090,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0098787,GO:0098789,GO:1901360
Evalue	2.33e-18
EggNOG OGs	COG5213@1\|root,KOG1049@2759\|Eukaryota
Description	pre-mRNA cleavage required for polyadenylation
COG category	A
BRITE	ko00000,ko00001,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1661	Gcaud1661	Gracilaria caudata M_176_S67 male	gene	NODE_34_length_72082_cov_4.421108 61840..63869 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1661.t1	Gcaud1661.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_34_length_72082_cov_4.421108 61840..63869 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1661.t1.stop1	Gcaud1661.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_34_length_72082_cov_4.421108 61840..61842 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1661.t1.CDS1	Gcaud1661.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_34_length_72082_cov_4.421108 61840..61877 -
Gcaud1661.t1.CDS2	Gcaud1661.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_34_length_72082_cov_4.421108 61945..62148 -
Gcaud1661.t1.CDS3	Gcaud1661.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_34_length_72082_cov_4.421108 62230..62329 -
Gcaud1661.t1.CDS4	Gcaud1661.t1.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_34_length_72082_cov_4.421108 62424..63869 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1661.t1.exon1	Gcaud1661.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_34_length_72082_cov_4.421108 61840..61877 -
Gcaud1661.t1.exon2	Gcaud1661.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_34_length_72082_cov_4.421108 61945..62148 -
Gcaud1661.t1.exon3	Gcaud1661.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_34_length_72082_cov_4.421108 62230..62329 -
Gcaud1661.t1.exon4	Gcaud1661.t1.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_34_length_72082_cov_4.421108 62424..63869 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1661.t1.intron1	Gcaud1661.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_34_length_72082_cov_4.421108 61878..61944 -
Gcaud1661.t1.intron2	Gcaud1661.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_34_length_72082_cov_4.421108 62149..62229 -
Gcaud1661.t1.intron3	Gcaud1661.t1.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_34_length_72082_cov_4.421108 62330..62423 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1661.t1.start1	Gcaud1661.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_34_length_72082_cov_4.421108 63867..63869 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_34_length_72082_cov_4.421108:61840..63869-
coding sequence from alignment at NODE_34_length_72082_cov_4.421108:61840..63869-

mRNA sequence

>Gcaud1661.t1 ID=Gcaud1661.t1|Name=Gcaud1661.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=596bp
MTTATDVAEEDLELYGEPVPESPSIVKTEGLIAVSEEKSVPAITDSHQTS
KNEDVPLTLSTSAPSKEPLPSENRNEIDKGKQESNGSPDGFQSTEPEQLD
KQSKDAGIPKNAVTEGSVKEEQGDNAGQEGNQSEGDKTANLSKTAKDEEA
GEDEEDEEEEEDESDDDDFDVILNVDEADVSSRPMNTSFGSIGKVRLGTN
KWQRPGYVPPERVIGNASQGAARTGGLLSMLPTPTMQVGNAQKSVYDLEI
GKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKT
VDGNKNQTSNAPRNVNQNAAKPPVNQQHGNRNRMGAPDQVGGVVNNKHGH
QPAMLHGMMGMPPPGSMQPMMGMPNMPNMRNPPEHLPGLPQNMHQFPPFN
PKDANPNGRGYAGPIPGYPFMPGNQPNENMFLYHGVPNFGAMGIPNAMPQ
GGMGRGDNRGFPGQMNMNPGQPPQDKLNKISPEGKANLIKEDMTTTEGSD
GEITEGTRIEGRILTGGDGMIVETTDMITVDAVVETMTVPEGPTIEETTT
GIATEEGTIGSDSRLQEISMMTENGQEDDWIHLGAEVFDRDKERA*

spliced messenger RNA

>Gcaud1661.t1 ID=Gcaud1661.t1|Name=Gcaud1661.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1788bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:61840..63869- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAACCGCAACCGACGTAGCTGAAGAAGACCTCGAGCTCTACGGAGA
GCCAGTACCAGAGAGCCCTTCCATTGTGAAGACGGAGGGGTTAATTGCTG
TAAGCGAGGAGAAAAGTGTTCCAGCCATAACCGACTCACATCAAACATCC
AAGAATGAGGACGTCCCGCTTACGCTTTCCACCAGTGCACCGTCGAAAGA
ACCATTGCCTTCTGAAAATAGAAATGAAATAGATAAAGGAAAGCAAGAGT
CTAATGGTTCCCCAGATGGATTTCAATCTACCGAACCAGAACAGCTGGAC
AAACAGAGTAAGGACGCTGGGATTCCAAAAAATGCGGTTACGGAAGGTTC
CGTCAAAGAAGAACAAGGAGATAATGCAGGTCAAGAAGGAAACCAGTCTG
AAGGAGACAAAACCGCAAACCTGTCAAAGACAGCCAAAGATGAAGAAGCA
GGTGAGGATGAAGAAGATGAGGAAGAAGAAGAAGATGAAAGCGATGATGA
CGACTTTGACGTCATTTTGAACGTCGATGAGGCTGATGTGTCCAGTAGAC
CAATGAACACCTCTTTCGGATCTATTGGCAAAGTTCGCCTGGGAACGAAC
AAATGGCAGCGGCCCGGATACGTGCCCCCGGAGCGAGTCATTGGGAATGC
CTCCCAGGGCGCCGCTAGAACCGGAGGACTACTCTCTATGCTGCCAACCC
CAACGATGCAGGTTGGGAATGCTCAAAAAAGTGTCTATGATCTTGAGATT
GGGAAGCTTACCGAAAAGCCCTGGCTGGACGCAAAAGCTGACATGACAGA
CTATTTCAACTATGGTTTCACAGAAGAAACTTGGAAGCTTTACTGCGAAA
GACAGAAGCAGATGCGTTTAGAAGTCAGTATGCTCGCGAAGATTAAAACT
GTGGACGGAAACAAGAACCAAACATCAAATGCACCTCGTAATGTAAACCA
GAACGCTGCAAAACCACCTGTGAACCAACAACATGGAAATCGCAACCGAA
TGGGTGCACCGGACCAAGTAGGTGGGGTTGTTAACAATAAGCATGGACAT
CAACCTGCTATGCTGCATGGGATGATGGGGATGCCTCCACCTGGATCCAT
GCAGCCGATGATGGGAATGCCGAACATGCCGAACATGCGAAATCCGCCCG
AGCACCTTCCGGGATTGCCGCAAAACATGCATCAGTTTCCACCATTCAAT
CCCAAGGATGCGAATCCAAATGGTCGAGGATACGCGGGACCTATACCGGG
ATATCCATTCATGCCAGGCAATCAACCAAATGAAAACATGTTTCTTTATC
ATGGAGTGCCCAACTTTGGAGCAATGGGTATACCTAACGCGATGCCACAG
GGAGGTATGGGACGGGGTGACAATCGAGGTTTTCCAGGTCAAATGAACAT
GAACCCAGGACAACCGCCGCAAGATAAGCTTAATAAGATATCCCCGGAGG
GCAAGGCAAATCTCATCAAGGAAGACATGACCACGACAGAAGGCAGCGAT
GGGGAGATAACAGAGGGCACACGGATCGAAGGCAGGATTTTGACAGGAGG
AGATGGAATGATAGTAGAGACGACGGATATGATAACAGTAGACGCCGTGG
TGGAAACTATGACGGTCCCGGAAGGTCCGACAATCGAAGAGACTACGACA
GGGATCGCGACCGAGGAAGGGACTATCGGAAGCGACAGTCGTCTTCAAGA
GATTTCGATGATGACAGAAAACGGGCAAGAAGATGACTGGATTCATTTAG
GCGCAGAAGTATTTGATAGAGATAAAGAACGAGCATAG

protein sequence of Gcaud1661.t1

>Gcaud1661.t1 ID=Gcaud1661.t1|Name=Gcaud1661.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=596bp
MTTATDVAEEDLELYGEPVPESPSIVKTEGLIAVSEEKSVPAITDSHQTS
KNEDVPLTLSTSAPSKEPLPSENRNEIDKGKQESNGSPDGFQSTEPEQLD
KQSKDAGIPKNAVTEGSVKEEQGDNAGQEGNQSEGDKTANLSKTAKDEEA
GEDEEDEEEEEDESDDDDFDVILNVDEADVSSRPMNTSFGSIGKVRLGTN
KWQRPGYVPPERVIGNASQGAARTGGLLSMLPTPTMQVGNAQKSVYDLEI
GKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKT
VDGNKNQTSNAPRNVNQNAAKPPVNQQHGNRNRMGAPDQVGGVVNNKHGH
QPAMLHGMMGMPPPGSMQPMMGMPNMPNMRNPPEHLPGLPQNMHQFPPFN
PKDANPNGRGYAGPIPGYPFMPGNQPNENMFLYHGVPNFGAMGIPNAMPQ
GGMGRGDNRGFPGQMNMNPGQPPQDKLNKISPEGKANLIKEDMTTTEGSD
GEITEGTRIEGRILTGGDGMIVETTDMITVDAVVETMTVPEGPTIEETTT
GIATEEGTIGSDSRLQEISMMTENGQEDDWIHLGAEVFDRDKERA*

mRNA from alignment at NODE_34_length_72082_cov_4.421108:61840..63869-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1661.t1 ID=Gcaud1661.t1|Name=Gcaud1661.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2030bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:61840..63869- (Gracilaria caudata M_176_S67 male)
ATGACAACCGCAACCGACGTAGCTGAAGAAGACCTCGAGCTCTACGGAGA
GCCAGTACCAGAGAGCCCTTCCATTGTGAAGACGGAGGGGTTAATTGCTG
TAAGCGAGGAGAAAAGTGTTCCAGCCATAACCGACTCACATCAAACATCC
AAGAATGAGGACGTCCCGCTTACGCTTTCCACCAGTGCACCGTCGAAAGA
ACCATTGCCTTCTGAAAATAGAAATGAAATAGATAAAGGAAAGCAAGAGT
CTAATGGTTCCCCAGATGGATTTCAATCTACCGAACCAGAACAGCTGGAC
AAACAGAGTAAGGACGCTGGGATTCCAAAAAATGCGGTTACGGAAGGTTC
CGTCAAAGAAGAACAAGGAGATAATGCAGGTCAAGAAGGAAACCAGTCTG
AAGGAGACAAAACCGCAAACCTGTCAAAGACAGCCAAAGATGAAGAAGCA
GGTGAGGATGAAGAAGATGAGGAAGAAGAAGAAGATGAAAGCGATGATGA
CGACTTTGACGTCATTTTGAACGTCGATGAGGCTGATGTGTCCAGTAGAC
CAATGAACACCTCTTTCGGATCTATTGGCAAAGTTCGCCTGGGAACGAAC
AAATGGCAGCGGCCCGGATACGTGCCCCCGGAGCGAGTCATTGGGAATGC
CTCCCAGGGCGCCGCTAGAACCGGAGGACTACTCTCTATGCTGCCAACCC
CAACGATGCAGGTTGGGAATGCTCAAAAAAGTGTCTATGATCTTGAGATT
GGGAAGCTTACCGAAAAGCCCTGGCTGGACGCAAAAGCTGACATGACAGA
CTATTTCAACTATGGTTTCACAGAAGAAACTTGGAAGCTTTACTGCGAAA
GACAGAAGCAGATGCGTTTAGAAGTCAGTATGCTCGCGAAGATTAAAACT
GTGGACGGAAACAAGAACCAAACATCAAATGCACCTCGTAATGTAAACCA
GAACGCTGCAAAACCACCTGTGAACCAACAACATGGAAATCGCAACCGAA
TGGGTGCACCGGACCAAGTAGGTGGGGTTGTTAACAATAAGCATGGACAT
CAACCTGCTATGCTGCATGGGATGATGGGGATGCCTCCACCTGGATCCAT
GCAGCCGATGATGGGAATGCCGAACATGCCGAACATGCGAAATCCGCCCG
AGCACCTTCCGGGATTGCCGCAAAACATGCATCAGTTTCCACCATTCAAT
CCCAAGGATGCGAATCCAAATGGTCGAGGATACGCGGGACCTATACCGGG
ATATCCATTCATGCCAGGCAATCAACCAAATGAAAACATGTTTCTTTATC
ATGGAGTGCCCAACTTTGGAGCAATGGGTATACCTAACGCGATGCCACAG
GGAGGTATGGGACGGGGTGACAATCGAGGTTTTCCAGGTCAAATGAACAT
GAACCCAGGACAACCGCCGCAAGATAAGCTTAATAAGATATCCCCGGTGA
GGCATATGGGGCAAGACGACGGGCAAAACATGGACGGAAGGCGGCGTTCT
GGTCAAGGTCATCAAACTTCTCGGTTCGGGAACGCGCAAGGAGGGCAAGG
CAAATCTCATCAAGGAAGACATGACCACGACAGAAGGCAGCGATGGGGAG
ATAACAGAGGGCACACGGATCGAAGGCAGGATTTTGACAGGCATGGAAAC
GACGGCGGACATGGGCAGGGTGGGAGAAGGGGTTATGATGATCGTGGATA
CGGTGACCGTAATCAGGACAGGAGGAGATGGAATGATAGTAGAGACGACG
GATATGATAACAGTAGACGCCGTGGTGGAAACTATGACGGTCCCGGAAGG
TCCGACAATCGAAGAGACTACGACAGGGATCGCGACCGAGGAAGGGACTA
TCGGAAGCGACAGTCGTCTTCAAGAGATTTCGATGATGACAGAAAACGGG
CAAGAAGATGACTGGATTCATTTAGGTAACGAGGGTTGTTGCTACCAAAG
AGCTGCTACGGGGTGCGGTTTCATGCGTTTTGTATGTACAAGGCGCAGAA
GTATTTGATAGAGATAAAGAACGAGCATAG

Coding sequence (CDS) from alignment at NODE_34_length_72082_cov_4.421108:61840..63869-

>Gcaud1661.t1 ID=Gcaud1661.t1|Name=Gcaud1661.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1788bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:61840..63869- (Gracilaria caudata M_176_S67 male)
ATGACAACCGCAACCGACGTAGCTGAAGAAGACCTCGAGCTCTACGGAGA
GCCAGTACCAGAGAGCCCTTCCATTGTGAAGACGGAGGGGTTAATTGCTG
TAAGCGAGGAGAAAAGTGTTCCAGCCATAACCGACTCACATCAAACATCC
AAGAATGAGGACGTCCCGCTTACGCTTTCCACCAGTGCACCGTCGAAAGA
ACCATTGCCTTCTGAAAATAGAAATGAAATAGATAAAGGAAAGCAAGAGT
CTAATGGTTCCCCAGATGGATTTCAATCTACCGAACCAGAACAGCTGGAC
AAACAGAGTAAGGACGCTGGGATTCCAAAAAATGCGGTTACGGAAGGTTC
CGTCAAAGAAGAACAAGGAGATAATGCAGGTCAAGAAGGAAACCAGTCTG
AAGGAGACAAAACCGCAAACCTGTCAAAGACAGCCAAAGATGAAGAAGCA
GGTGAGGATGAAGAAGATGAGGAAGAAGAAGAAGATGAAAGCGATGATGA
CGACTTTGACGTCATTTTGAACGTCGATGAGGCTGATGTGTCCAGTAGAC
CAATGAACACCTCTTTCGGATCTATTGGCAAAGTTCGCCTGGGAACGAAC
AAATGGCAGCGGCCCGGATACGTGCCCCCGGAGCGAGTCATTGGGAATGC
CTCCCAGGGCGCCGCTAGAACCGGAGGACTACTCTCTATGCTGCCAACCC
CAACGATGCAGGTTGGGAATGCTCAAAAAAGTGTCTATGATCTTGAGATT
GGGAAGCTTACCGAAAAGCCCTGGCTGGACGCAAAAGCTGACATGACAGA
CTATTTCAACTATGGTTTCACAGAAGAAACTTGGAAGCTTTACTGCGAAA
GACAGAAGCAGATGCGTTTAGAAGTCAGTATGCTCGCGAAGATTAAAACT
GTGGACGGAAACAAGAACCAAACATCAAATGCACCTCGTAATGTAAACCA
GAACGCTGCAAAACCACCTGTGAACCAACAACATGGAAATCGCAACCGAA
TGGGTGCACCGGACCAAGTAGGTGGGGTTGTTAACAATAAGCATGGACAT
CAACCTGCTATGCTGCATGGGATGATGGGGATGCCTCCACCTGGATCCAT
GCAGCCGATGATGGGAATGCCGAACATGCCGAACATGCGAAATCCGCCCG
AGCACCTTCCGGGATTGCCGCAAAACATGCATCAGTTTCCACCATTCAAT
CCCAAGGATGCGAATCCAAATGGTCGAGGATACGCGGGACCTATACCGGG
ATATCCATTCATGCCAGGCAATCAACCAAATGAAAACATGTTTCTTTATC
ATGGAGTGCCCAACTTTGGAGCAATGGGTATACCTAACGCGATGCCACAG
GGAGGTATGGGACGGGGTGACAATCGAGGTTTTCCAGGTCAAATGAACAT
GAACCCAGGACAACCGCCGCAAGATAAGCTTAATAAGATATCCCCGGAGG
GCAAGGCAAATCTCATCAAGGAAGACATGACCACGACAGAAGGCAGCGAT
GGGGAGATAACAGAGGGCACACGGATCGAAGGCAGGATTTTGACAGGAGG
AGATGGAATGATAGTAGAGACGACGGATATGATAACAGTAGACGCCGTGG
TGGAAACTATGACGGTCCCGGAAGGTCCGACAATCGAAGAGACTACGACA
GGGATCGCGACCGAGGAAGGGACTATCGGAAGCGACAGTCGTCTTCAAGA
GATTTCGATGATGACAGAAAACGGGCAAGAAGATGACTGGATTCATTTAG
GCGCAGAAGTATTTGATAGAGATAAAGAACGAGCATAG