Gcaud1653.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1653.t1
Unique NameGcaud1653.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length293
Homology
BLAST of Gcaud1653.t1 vs. uniprot
Match: A0A2V3IUT2_9FLOR (Ribosomal L1 domain-containing protein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUT2_9FLOR)

HSP 1 Score: 335 bits (860), Expect = 1.250e-110
Identity = 166/263 (63.12%), Postives = 209/263 (79.47%), Query Frame = 0
Query:    9 RSDSVKAEEQDAAVDRIQLDTLRSAVKALVKDAVAFETKRNEK-LIQAGEDVQQLLQPE-GDFHLVVTFTFPPFKSKLRPLPIALKHSLWKEGETEVCLFVKDPQRLVKDYLAQHGNGGVTRVLGVEKLRKRYGTHEAKRELSTLYDVFLVDKRVAPMMPNLLGNAFLQSKLMPLAVDMTKDVVASIQRTLKSTPFTPRQGTCTNVKVGRSDFSEEQIVDNVLMAVDGIIRRCQRGWNDIQSFSLKTSRSPAVQIYLSLPGEK 269
            R  S  A+   A + +I   TL SAV AL KDA AFE KR EK L++  E+   +L  + GDFHLV+TF   P K KLRP+ I LKHSLWKEGE EVCLFVKDPQR VKDYLA+HG+GGV+RVLGV+KLRKRYGTHE +REL T++DVFLVD+RVAPMMPNLLG +F+++K++PLAV+M K+VV +I++TL STPF PRQGTCT+VK+GR  F+E++IV+N LMA +G+  RC+ GW ++QS  LKTS+SP +QIYLSLPGE+
Sbjct:    8 RKQSSAAKNPQAFIKQISQQTLTSAVSALFKDASAFEKKRREKMLLKEDEEGDTVLDNDSGDFHLVITFKIAPLKEKLRPVAIRLKHSLWKEGEHEVCLFVKDPQRKVKDYLAEHGSGGVSRVLGVDKLRKRYGTHEGRRELCTMFDVFLVDQRVAPMMPNLLGKSFIEAKMVPLAVNMRKNVVEAIRKTLASTPFAPRQGTCTSVKIGRLGFTEQEIVENCLMAAEGVAERCEGGWKNVQSLGLKTSQSPTIQIYLSLPGEE 270          
BLAST of Gcaud1653.t1 vs. uniprot
Match: A0A7J7QLN2_9CHLO (Ribosomal protein L1 n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A7J7QLN2_9CHLO)

HSP 1 Score: 166 bits (419), Expect = 2.150e-46
Identity = 91/227 (40.09%), Postives = 135/227 (59.47%), Query Frame = 0
Query:   51 KLIQAGEDVQQLLQPEGDFHLVVTFTFPPF-KSKLRPLPIALKHSLWKEGETEVCLFVKDPQ----RLVKDYLAQH-GNGGVTRVLGVEKLRKRYGTHEAKRELSTLYDVFLVDKRVAPMMPNLLGNAFLQSKLMPLAVDM-TKDVVASIQRTLKSTPFTPRQGTCTNVKVGRSDFSEEQIVDNVLMAVDGIIRRCQRGWNDIQSFSLKTSRSPAVQIYLSLPGEKV 270
            K +   +   QLL+ +  FHLVV+    P    K +P+ IA+ H LW     EVCLFVKD +    +  K  LA+   NGGV +V+G+ KLR +Y +HEAKR+L + YD+FL D+R+ P +P L+G +F + K  P+ VDM   D    +Q  L +T  TP  GTC +V++ RS   ++QIVDN + A+ G++    + W ++Q+  LKTS S ++ +Y  LP E V
Sbjct:   20 KFVGDADKSTQLLEEDEVFHLVVSLKKAPVGPRKDKPIRIAIPHPLWTAEGAEVCLFVKDHKGEGHKAAKQRLAKLLKNGGVAKVVGLSKLRTKYESHEAKRQLCSSYDLFLADERIIPSLPKLIGKSFFKRKKQPVPVDMRAADFPKQVQAALAATYMTPPHGTCVSVRIARSSMEQQQIVDNAMAALRGVVGNVPKKWANVQAVYLKTSESVSLPVYQVLPEEPV 246          
BLAST of Gcaud1653.t1 vs. uniprot
Match: A0A507EYC8_9FUNG (Uncharacterized protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507EYC8_9FUNG)

HSP 1 Score: 164 bits (415), Expect = 5.120e-45
Identity = 95/236 (40.25%), Postives = 138/236 (58.47%), Query Frame = 0
Query:   34 VKALVKDAVAFETKRNEKLIQAGEDVQQLLQPEGDFHLVVTFTFP--PFKSKLRPLPIALKHSLWKEGETEVCLFVKDPQRLVKDYLAQHGNGGVTRVLGVEKLRKRYGTHEAKRELSTLYDVFLVDKRVAPMMPNLLGNAFLQSKLMPLAVDMTK-DVVASIQRTLKSTPFTPRQGTCTNVKVGRSDFSEEQIVDNVLMAVDGIIRRCQRGWNDIQSFSLKTSRSPAVQIYLSLP 266
            V   V+  +A+E K   + +Q+ E+   L++ +    ++V       P + +L+P  I LKH L+   E++VCL  KDPQR  KD L      GV++V+GV KLR ++  +EAKR+L   YD+FL D+RV P++P+L+G  F   K  P  VD+TK D+   IQ  L ST      G C  VKVG   F EEQ+++NV+ AV  I ++  + WN+I S  LKT+ S A+ IY SLP
Sbjct:    8 VSKAVRALMAYEKKC--QALQSEEEKTNLIEEDATKSVLVVVATKRMPDRLRLKPQRILLKHPLY--AESDVCLITKDPQRTYKDLLQSKAVTGVSKVIGVSKLRAKFKQYEAKRQLCASYDLFLADERVIPLLPSLIGKTFFAKKKHPAPVDLTKNDLAGEIQSALHSTYLIMNNGVCNAVKVGTMTFEEEQLIENVMQAVSEIAKKIPKKWNNILSIHLKTTDSIALPIYNSLP 239          
BLAST of Gcaud1653.t1 vs. uniprot
Match: A0A0L0HJE6_SPIPD (Uncharacterized protein n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HJE6_SPIPD)

HSP 1 Score: 163 bits (413), Expect = 8.940e-45
Identity = 92/236 (38.98%), Postives = 138/236 (58.47%), Query Frame = 0
Query:   34 VKALVKDAVAFETKRNEKLIQAGEDVQQLLQPEGDFHLVVTFTFP--PFKSKLRPLPIALKHSLWKEGETEVCLFVKDPQRLVKDYLAQHGNGGVTRVLGVEKLRKRYGTHEAKRELSTLYDVFLVDKRVAPMMPNLLGNAFLQSKLMPLAVDMTK-DVVASIQRTLKSTPFTPRQGTCTNVKVGRSDFSEEQIVDNVLMAVDGIIRRCQRGWNDIQSFSLKTSRSPAVQIYLSLP 266
            V   V+  +A+E K   + IQ+ E    L++ +    ++V       P + +L+P  I LKH L+   E++VCL  KDPQR  KD L      G+++V+G+ KLR ++  +EAKR+L   YD+FL D+RV P++P+L+G  F   K  P  VD+TK D+   IQ  L ST      G C  VK+G + F EEQ+++NV+ AV  I ++  + WN+I S  LKT+ S A+ I+ SLP
Sbjct:    8 VSKAVRALMAYEKK--SQAIQSEEQKTNLIEEDASKSVLVIVATKKMPDRLRLKPQRILLKHPLY--AESDVCLITKDPQRTYKDLLQSKAVTGISKVMGISKLRAKFKPYEAKRQLCASYDLFLADERVIPLLPSLIGKTFFAKKKHPAPVDLTKNDLAGEIQSALHSTYLITNNGVCNAVKIGTTRFDEEQLIENVMQAVSEIAKKIPKKWNNILSIHLKTTDSIALPIFNSLP 239          
BLAST of Gcaud1653.t1 vs. uniprot
Match: A0A1X6NI76_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NI76_PORUM)

HSP 1 Score: 157 bits (397), Expect = 1.980e-43
Identity = 88/199 (44.22%), Postives = 123/199 (61.81%), Query Frame = 0
Query:   79 PFKSKLRPLPIALKHSLWKEGETEVCLFVKDPQRLVKDYLAQHGN-GGVTRVLGVEKLRKRYGTHEAKRELSTLYDVFLVDKRVAPMMPNLLGNAFLQSKLMPLAVDMTKDVVASIQRTLKSTPFTPRQGTCTNVKVGRSDFSEEQIVDNVLMAVDGIIRRCQRGWNDIQSFSLKTSRSPAVQIYLSL--PGEKVVAAR 274
            P +++++P  + L   L   GE EVCLFVKDPQR VKDY A  G+ GGVTRV+G++KLRKRY T+E KREL   YD+FL D R+  ++P LLG+AF +SK MPL V + ++ V   +R L+ST  T   G+C  V  G +  +   +  NV   + G+  +   GW+++ S  LKT  S A+ IY S+  P + V A R
Sbjct:    2 PERARIKPTLLPLSTPLHVPGEAEVCLFVKDPQRAVKDYFAAAGDSGGVTRVMGLDKLRKRYRTYEGKRELVAAYDLFLADDRIELLLPKLLGDAFFRSKKMPLPVRLGRNPVKEARRALRSTRLTLSGGSCVAVVAGGTGMATAALAANVADVLVGVAAKAPGGWSNVLSVHLKTPDSVALPIYSSVVAPADLVKADR 200          
BLAST of Gcaud1653.t1 vs. uniprot
Match: A0A5M3MPK0_CONPW (Ribosomal protein L1 n=1 Tax=Coniophora puteana (strain RWD-64-598) TaxID=741705 RepID=A0A5M3MPK0_CONPW)

HSP 1 Score: 159 bits (403), Expect = 4.090e-43
Identity = 92/241 (38.17%), Postives = 144/241 (59.75%), Query Frame = 0
Query:   23 DRIQLDTLRSAVKALVKDAVAFETKRNEKLIQAGEDVQQLLQPEGDFHLVVTFTFPPFKSKLRPLPIALKHSLWKEGETEVCLFVKDPQRLVKDYLAQHGNGGVTRVLGVEKLRKRYGTHEAKRELSTLYDVFLVDKRVAPMMPNLLGNAFLQSKLMPLAVDMT-KDVVASIQRTLKSTPFTPRQGTCTNVKVGRSDFSEEQIVDNVLMAVDGIIRRCQRGWNDIQSFSLKTSRSPAVQIY 262
            + + L   + AV+AL K      TK+ ++L    E+ Q L   E    L +T      + K++P+ + +KH +     + VCL  KDPQR  KD LA HG   V+RV+G+EKL+ ++ + EA+R L    D+FL D+RV P++P LLG  +  +K  P+ V MT KD+ A ++R ++ST     +GTCT+VK+GR+  S   I+DN+ +AV GI++  + GW +IQS  LKT+ S ++ I+
Sbjct:    9 EHVSLKQCKLAVEALQKH----NTKKEKEL----EETQLLAGKEQHIWLQITVKRMHTEKKIKPVKVPIKHPIVDPRTSPVCLISKDPQREYKDLLASHGIKFVSRVVGIEKLKGKFKSFEARRMLLRENDLFLADERVIPLLPKLLGKKWFDAKKQPIPVCMTRKDLKAELERAIESTYMHQNRGTCTSVKIGRAQQSAAHILDNLKLAVPGIVKNIKDGWENIQSLYLKTNSSVSLPIW 241          
BLAST of Gcaud1653.t1 vs. uniprot
Match: A0A0D2VPE8_CAPO3 (Uncharacterized protein n=3 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VPE8_CAPO3)

HSP 1 Score: 160 bits (405), Expect = 2.580e-41
Identity = 82/197 (41.62%), Postives = 122/197 (61.93%), Query Frame = 0
Query:   87 LPIALKHSLWKEGETEVCLFVKDPQRLVKDYLAQHGNGGVTRVLGVEKLRKRYGTHEAKRELSTLYDVFLVDKRVAPMMPNLLGNAFLQSKLMPLAVDMTKDVVASIQRTLKSTPFTPRQGTCTNVKVGRSDFSEEQIVDNVLMAVDGIIRRCQRGWNDIQSFSLKTSRSPAVQIYLSLPGEKVVAARDDSASDART 283
            +P+ L H L+   +  VCL  KDPQ+ +K ++ +    G+ +V+GV KLR +Y T++ KREL+ LYD+F+ D RV PM+P LLG  F + K +P+ V +TK+V   I     ST  T   G+C +V++GR+ F+ EQ+ +N+  A+  I+    RGW  IQS +LKT+ S A+ IY SLP    +AA DD+  D  T
Sbjct:  172 IPVPLAHGLYT-NQHSVCLITKDPQQEMKAFIKERNIEGIHKVMGVSKLRSKYKTYDTKRELARLYDLFIADDRVIPMLPRLLGKPFFERKKLPVPVRLTKNVAREINAARTSTYMTLTHGSCLSVRIGRAGFTGEQLAENIFAAIPTIVANIPRGWKGIQSINLKTANSLALPIYNSLP----IAAVDDNDDDEYT 363          
BLAST of Gcaud1653.t1 vs. uniprot
Match: A0A507EE43_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EE43_9FUNG)

HSP 1 Score: 155 bits (391), Expect = 2.780e-40
Identity = 88/246 (35.77%), Postives = 140/246 (56.91%), Query Frame = 0
Query:   38 VKDAVAFETKRNEKLIQAGEDVQQLLQPEG--DFHLVVTFTFPPFKSKLRPLPIALKHSLWKEGETEVCLFVKDPQRLVKDYLAQHGNGGVTRVLGVEKLRKRYGTHEAKRELSTLYDVFLVDKRVAPMMPNLLGNAFLQSKLMPLAVDMTK-DVVASIQRTLKSTPFTPRQGTCTNVKVGRSDFSEEQIVDNVLMAVDGIIRRCQRGWNDIQSFSLKTSRSPAVQIYLSLPGEKVVAARDDSASD 280
            V+ AVA     N K  QA      LL  E   +F L+VT    P K ++ P  I L H LW + +  +CL  KDP+   K+ L + G  G+T+VL +  LR ++ ++EAKR+L+  +D+F+ D+R+ P++P  +G      K++P  V+MTK D+     + L+ST      GTC  V+V  + F+ EQ+V+N++MA   I+ +  + WN+I S +LKTS+S A+ +Y+SLP +      D   +D
Sbjct:    9 VEKAVAALLAWNAK--QAAAKKASLLDEENVENFDLIVTTKLMPEKLQVNPQRILLAHPLWTKAD--ICLITKDPKDEFKNLLEEKGVTGLTKVLSMAGLRSKFKSYEAKRQLADSFDLFIADERILPLLPKAIGKKMFSKKMLPAPVNMTKKDLKNEFAKVLQSTFLRRNLGTCNAVRVASTTFTPEQVVENIMMAAPAIVDKLPKKWNNILSIALKTSKSAALPVYVSLPDQPAQKPTDVEMTD 250          
BLAST of Gcaud1653.t1 vs. uniprot
Match: G4YF28_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YF28_PHYSP)

HSP 1 Score: 152 bits (383), Expect = 5.100e-40
Identity = 93/238 (39.08%), Postives = 140/238 (58.82%), Query Frame = 0
Query:   30 LRSAVKALVKDAVAFETKRNEKLIQAGEDVQQLLQPEGDFHLVVTFTFPPFKSKLRPLPIALKHSLWKEGETEVCLFVKDP-QRLVKDYLAQHGNGGVTRVLGVEKLRKRYGTHEAKRELSTLYDVFLVDKRVAPMMPNLLGNAFLQSKLMPLAVDMT-KDVVASIQRTLKSTPFTPRQGTCTNVKVGRSDFSEEQIVDNVLMAVDGIIRRCQRGWNDIQSFSLKTSRSPAVQIYLSL 265
            +R AV AL     AF  K++E+  +A     QL++       ++T    P K+ L+P+P+ L HSL+ EG  E+CLFVKD  ++ +K+ LA+    GVT+V+ V+KLRK +   E KR L+  YD+FL D RV P +   LG  F   K  P+AV ++ K + AS++   + T F    G C NVKV   D + EQIV+N+++A++       +GWN +QS S+KTS S A+ +Y +L
Sbjct:   19 VRRAVLALK----AFVAKKSEERAKA-----QLVEDTEYVSCILTRKLVPGKTTLKPIPVTLPHSLYDEG-AEICLFVKDEDKKRIKEALAKDPVPGVTKVMTVKKLRKNFSRFEDKRALAAAYDMFLADDRVLPYLKGHLGTKFFVKKKQPIAVRVSRKSLAASLRLASRRTAFHVSAGVCNNVKVACLDMTPEQIVENIMVAMNNCANLVPKGWNGVQSISVKTSDSVALPVYNAL 246          
BLAST of Gcaud1653.t1 vs. uniprot
Match: A0A1Y1YJU8_9FUNG (Ribosomal protein L1 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YJU8_9FUNG)

HSP 1 Score: 150 bits (378), Expect = 5.540e-40
Identity = 80/217 (36.87%), Postives = 129/217 (59.45%), Query Frame = 0
Query:   54 QAGEDVQ-QLLQPEGDFHLVVTFTFPPFKSKLRPLPIALKHSLWKEGETEVCLFVKDPQRLVKDYLAQHGNGGVTRVLGVEKLRKRYGTHEAKRELSTLYDVFLVDKRVAPMMPNLLGNAFLQSKLMPLAVDMTK-DVVASIQRTLKSTPFTPRQGTCTNVKVGRSDFSEEQIVDNVLMAVDGIIRRCQRGWNDIQSFSLKTSRSPAVQIYLSLPGE 268
            +  ED Q QLLQ E    LV+T       S ++P  I L+H++   G  +VCLF KDPQ+  K  L + G   +++V+G+ KLR +Y T+EAKREL   Y +FL D R+ PM+P L+G  F + K  P+ + +T  ++   +Q+ L ST      GTC ++K+G +  S +++ +N+  A++ ++ +  + W +IQS  +KT+ S A+ I+ SLP E
Sbjct:   61 KVSEDKQDQLLQDEEPVWLVITTKKFSESSNIKPARIPLRHAIVSSG-VDVCLFTKDPQKEYKQLLEKKGVKRISKVIGISKLRAKYKTYEAKRELCQSYGLFLADARIIPMLPKLIGKKFFERKKQPIPISLTAGNLDKEVQKILSSTYMFKPNGTCMSIKIGTTAQSAQEVAENIDHAINHVVEKIPKKWKNIQSLHIKTTESVALPIFNSLPDE 276          
The following BLAST results are available for this feature:
BLAST of Gcaud1653.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IUT2_9FLOR1.250e-11063.12Ribosomal L1 domain-containing protein 1 n=1 Tax=G... [more]
A0A7J7QLN2_9CHLO2.150e-4640.09Ribosomal protein L1 n=2 Tax=Scenedesmaceae TaxID=... [more]
A0A507EYC8_9FUNG5.120e-4540.25Uncharacterized protein n=1 Tax=Spizellomyces sp. ... [more]
A0A0L0HJE6_SPIPD8.940e-4538.98Uncharacterized protein n=1 Tax=Spizellomyces punc... [more]
A0A1X6NI76_PORUM1.980e-4344.22Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A5M3MPK0_CONPW4.090e-4338.17Ribosomal protein L1 n=1 Tax=Coniophora puteana (s... [more]
A0A0D2VPE8_CAPO32.580e-4141.62Uncharacterized protein n=3 Tax=Capsaspora owczarz... [more]
A0A507EE43_9FUNG2.780e-4035.77Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
G4YF28_PHYSP5.100e-4039.08Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A1Y1YJU8_9FUNG5.540e-4036.87Ribosomal protein L1 n=1 Tax=Basidiobolus meristos... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016095Ribosomal protein L1, 3-layer alpha/beta-sandwichGENE3D3.40.50.790coord: 118..200
e-value: 1.8E-14
score: 55.8
NoneNo IPR availableGENE3D3.30.190.20coord: 201..256
e-value: 1.8E-14
score: 55.8
NoneNo IPR availablePANTHERPTHR23105RIBOSOMAL PROTEIN L7AE FAMILY MEMBERcoord: 21..269
NoneNo IPR availablePANTHERPTHR23105:SF31RIBOSOMAL L1 DOMAIN-CONTAINING PROTEIN 1coord: 21..269
IPR028364Ribosomal protein L1/ribosomal biogenesis proteinPFAMPF00687Ribosomal_L1coord: 68..257
e-value: 5.0E-48
score: 163.5
IPR028364Ribosomal protein L1/ribosomal biogenesis proteinCDDcd00403Ribosomal_L1coord: 30..261
e-value: 1.58199E-39
score: 135.389
IPR023674Ribosomal protein L1-likeSUPERFAMILY56808Ribosomal protein L1coord: 65..262

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_34_length_72082_cov_4.421108contigNODE_34_length_72082_cov_4.421108:40549..41508 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1653.t1Gcaud1653.t1Gracilaria caudata M_176_S67 malemRNANODE_34_length_72082_cov_4.421108 40549..41508 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1653.t1 ID=Gcaud1653.t1|Name=Gcaud1653.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=293bp
MGQKRSRNRSDSVKAEEQDAAVDRIQLDTLRSAVKALVKDAVAFETKRNE
KLIQAGEDVQQLLQPEGDFHLVVTFTFPPFKSKLRPLPIALKHSLWKEGE
TEVCLFVKDPQRLVKDYLAQHGNGGVTRVLGVEKLRKRYGTHEAKRELST
LYDVFLVDKRVAPMMPNLLGNAFLQSKLMPLAVDMTKDVVASIQRTLKST
PFTPRQGTCTNVKVGRSDFSEEQIVDNVLMAVDGIIRRCQRGWNDIQSFS
LKTSRSPAVQIYLSLPGEKVVAARDDSASDARTVKKTKVDAK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016095Ribosomal_L1_3-a/b-sand
IPR028364Ribosomal_L1/biogenesis
IPR023674Ribosomal_L1-like