Gcaud1653.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1653.t1
Unique Name	Gcaud1653.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	293

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_34_length_72082_cov_4.421108	contig	NODE_34_length_72082_cov_4.421108:40549..41508 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	109760.SPPG_04240T0
Preferred name	CIC1
PFAMs	Ribosomal_L1
Max annot lvl	4751\|Fungi
KEGG ko	ko:K14775,ko:K14783
GOs	GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0030163,GO:0030490,GO:0030674,GO:0030684,GO:0030686,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044877,GO:0046483,GO:0060090,GO:0070013,GO:0070628,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1990904
Evalue	1.54e-45
EggNOG OGs	KOG1685@1\|root,KOG1685@2759\|Eukaryota,38CAK@33154\|Opisthokonta,3NU7W@4751\|Fungi
Description	Ribosomal protein L1
COG category	S
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1653	Gcaud1653	Gracilaria caudata M_176_S67 male	gene	NODE_34_length_72082_cov_4.421108 40549..41508 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1653.t1	Gcaud1653.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_34_length_72082_cov_4.421108 40549..41508 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1653.t1.stop1	Gcaud1653.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_34_length_72082_cov_4.421108 40549..40551 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1653.t1.CDS1	Gcaud1653.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_34_length_72082_cov_4.421108 40549..41161 -
Gcaud1653.t1.CDS2	Gcaud1653.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_34_length_72082_cov_4.421108 41243..41508 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1653.t1.exon1	Gcaud1653.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_34_length_72082_cov_4.421108 40549..41161 -
Gcaud1653.t1.exon2	Gcaud1653.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_34_length_72082_cov_4.421108 41243..41508 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1653.t1.intron1	Gcaud1653.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_34_length_72082_cov_4.421108 41162..41242 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1653.t1.start1	Gcaud1653.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_34_length_72082_cov_4.421108 41506..41508 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_34_length_72082_cov_4.421108:40549..41508-
coding sequence from alignment at NODE_34_length_72082_cov_4.421108:40549..41508-

mRNA sequence

>Gcaud1653.t1 ID=Gcaud1653.t1|Name=Gcaud1653.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=293bp
MGQKRSRNRSDSVKAEEQDAAVDRIQLDTLRSAVKALVKDAVAFETKRNE
KLIQAGEDVQQLLQPEGDFHLVVTFTFPPFKSKLRPLPIALKHSLWKEGE
TEVCLFVKDPQRLVKDYLAQHGNGGVTRVLGVEKLRKRYGTHEAKRELST
LYDVFLVDKRVAPMMPNLLGNAFLQSKLMPLAVDMTKDVVASIQRTLKST
PFTPRQGTCTNVKVGRSDFSEEQIVDNVLMAVDGIIRRCQRGWNDIQSFS
LKTSRSPAVQIYLSLPGEKVVAARDDSASDARTVKKTKVDAK*

spliced messenger RNA

>Gcaud1653.t1 ID=Gcaud1653.t1|Name=Gcaud1653.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=879bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:40549..41508- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACAAAAGCGTAGTCGAAATCGTTCGGACTCTGTCAAAGCTGAAGA
GCAAGATGCGGCTGTGGACCGAATTCAGCTTGACACGCTCAGGTCCGCTG
TGAAAGCTTTGGTCAAAGATGCGGTTGCGTTCGAAACAAAGCGCAACGAA
AAGTTAATACAAGCGGGAGAAGACGTGCAGCAATTGCTTCAACCTGAAGG
AGACTTTCATCTAGTGGTTACGTTCACGTTTCCGCCGTTCAAGTCAAAAC
TGCGTCCTTTGCCAATTGCTCTGAAACATTCGCTGTGGAAAGAAGGGGAA
ACTGAAGTGTGTCTGTTTGTGAAGGATCCACAGCGTCTTGTAAAAGATTA
TTTGGCACAGCACGGAAACGGGGGCGTCACACGCGTTCTAGGCGTCGAGA
AGTTAAGAAAACGGTATGGAACACATGAAGCAAAACGCGAGCTAAGTACA
TTGTACGACGTCTTTCTGGTGGATAAAAGAGTTGCGCCAATGATGCCAAA
CTTGTTAGGCAACGCGTTTCTACAGTCCAAACTGATGCCACTCGCAGTAG
ATATGACAAAAGATGTGGTTGCTTCAATTCAAAGAACGTTGAAGAGTACG
CCGTTCACTCCGAGACAGGGCACTTGCACGAATGTGAAGGTGGGCAGGAG
TGACTTCAGTGAGGAACAAATCGTGGATAATGTGTTGATGGCTGTCGATG
GCATTATTCGACGTTGTCAACGTGGCTGGAACGATATTCAATCGTTTAGT
TTGAAAACCAGTCGCTCACCGGCCGTGCAGATATATCTTTCGCTGCCCGG
TGAGAAGGTTGTGGCCGCAAGGGATGACTCGGCGAGTGATGCAAGGACCG
TGAAGAAAACCAAGGTGGATGCAAAGTAA

protein sequence of Gcaud1653.t1

>Gcaud1653.t1 ID=Gcaud1653.t1|Name=Gcaud1653.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=293bp
MGQKRSRNRSDSVKAEEQDAAVDRIQLDTLRSAVKALVKDAVAFETKRNE
KLIQAGEDVQQLLQPEGDFHLVVTFTFPPFKSKLRPLPIALKHSLWKEGE
TEVCLFVKDPQRLVKDYLAQHGNGGVTRVLGVEKLRKRYGTHEAKRELST
LYDVFLVDKRVAPMMPNLLGNAFLQSKLMPLAVDMTKDVVASIQRTLKST
PFTPRQGTCTNVKVGRSDFSEEQIVDNVLMAVDGIIRRCQRGWNDIQSFS
LKTSRSPAVQIYLSLPGEKVVAARDDSASDARTVKKTKVDAK*

mRNA from alignment at NODE_34_length_72082_cov_4.421108:40549..41508-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1653.t1 ID=Gcaud1653.t1|Name=Gcaud1653.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=960bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:40549..41508- (Gracilaria caudata M_176_S67 male)
ATGGGACAAAAGCGTAGTCGAAATCGTTCGGACTCTGTCAAAGCTGAAGA
GCAAGATGCGGCTGTGGACCGAATTCAGCTTGACACGCTCAGGTCCGCTG
TGAAAGCTTTGGTCAAAGATGCGGTTGCGTTCGAAACAAAGCGCAACGAA
AAGTTAATACAAGCGGGAGAAGACGTGCAGCAATTGCTTCAACCTGAAGG
AGACTTTCATCTAGTGGTTACGTTCACGTTTCCGCCGTTCAAGTCAAAAC
TGCGTCCTTTGCCAATGTGCGTTTCACCATTTCTATCACCCCTCTTTTTT
TTTTAATACGCAACTGACGTTTCTGTTTCGTTTCATGCCGCACATAGTGC
TCTGAAACATTCGCTGTGGAAAGAAGGGGAAACTGAAGTGTGTCTGTTTG
TGAAGGATCCACAGCGTCTTGTAAAAGATTATTTGGCACAGCACGGAAAC
GGGGGCGTCACACGCGTTCTAGGCGTCGAGAAGTTAAGAAAACGGTATGG
AACACATGAAGCAAAACGCGAGCTAAGTACATTGTACGACGTCTTTCTGG
TGGATAAAAGAGTTGCGCCAATGATGCCAAACTTGTTAGGCAACGCGTTT
CTACAGTCCAAACTGATGCCACTCGCAGTAGATATGACAAAAGATGTGGT
TGCTTCAATTCAAAGAACGTTGAAGAGTACGCCGTTCACTCCGAGACAGG
GCACTTGCACGAATGTGAAGGTGGGCAGGAGTGACTTCAGTGAGGAACAA
ATCGTGGATAATGTGTTGATGGCTGTCGATGGCATTATTCGACGTTGTCA
ACGTGGCTGGAACGATATTCAATCGTTTAGTTTGAAAACCAGTCGCTCAC
CGGCCGTGCAGATATATCTTTCGCTGCCCGGTGAGAAGGTTGTGGCCGCA
AGGGATGACTCGGCGAGTGATGCAAGGACCGTGAAGAAAACCAAGGTGGA
TGCAAAGTAA

Coding sequence (CDS) from alignment at NODE_34_length_72082_cov_4.421108:40549..41508-

>Gcaud1653.t1 ID=Gcaud1653.t1|Name=Gcaud1653.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=879bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:40549..41508- (Gracilaria caudata M_176_S67 male)
ATGGGACAAAAGCGTAGTCGAAATCGTTCGGACTCTGTCAAAGCTGAAGA
GCAAGATGCGGCTGTGGACCGAATTCAGCTTGACACGCTCAGGTCCGCTG
TGAAAGCTTTGGTCAAAGATGCGGTTGCGTTCGAAACAAAGCGCAACGAA
AAGTTAATACAAGCGGGAGAAGACGTGCAGCAATTGCTTCAACCTGAAGG
AGACTTTCATCTAGTGGTTACGTTCACGTTTCCGCCGTTCAAGTCAAAAC
TGCGTCCTTTGCCAATTGCTCTGAAACATTCGCTGTGGAAAGAAGGGGAA
ACTGAAGTGTGTCTGTTTGTGAAGGATCCACAGCGTCTTGTAAAAGATTA
TTTGGCACAGCACGGAAACGGGGGCGTCACACGCGTTCTAGGCGTCGAGA
AGTTAAGAAAACGGTATGGAACACATGAAGCAAAACGCGAGCTAAGTACA
TTGTACGACGTCTTTCTGGTGGATAAAAGAGTTGCGCCAATGATGCCAAA
CTTGTTAGGCAACGCGTTTCTACAGTCCAAACTGATGCCACTCGCAGTAG
ATATGACAAAAGATGTGGTTGCTTCAATTCAAAGAACGTTGAAGAGTACG
CCGTTCACTCCGAGACAGGGCACTTGCACGAATGTGAAGGTGGGCAGGAG
TGACTTCAGTGAGGAACAAATCGTGGATAATGTGTTGATGGCTGTCGATG
GCATTATTCGACGTTGTCAACGTGGCTGGAACGATATTCAATCGTTTAGT
TTGAAAACCAGTCGCTCACCGGCCGTGCAGATATATCTTTCGCTGCCCGG
TGAGAAGGTTGTGGCCGCAAGGGATGACTCGGCGAGTGATGCAAGGACCG
TGAAGAAAACCAAGGTGGATGCAAAGTAA