Gcaud1660.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1660.t1
Unique NameGcaud1660.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length156
Homology
BLAST of Gcaud1660.t1 vs. uniprot
Match: A0A2V3IUZ5_9FLOR (Ubiquitin-conjugating enzyme E2 J2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUZ5_9FLOR)

HSP 1 Score: 312 bits (800), Expect = 7.640e-107
Identity = 147/155 (94.84%), Postives = 149/155 (96.13%), Query Frame = 0
Query:    1 MASKTSVHRLRKEFRNISREPPPHITARPLPSNILKWYFVLEGPAGTPYEGGIFMGRLQFPEQYPYKPPAVYMCTPQGRFKCNQKLCLSMSDFHPETWNPLWSVSAVLTGLLSFMLGAEDTVGSIQTSEAQKRLLARDSHRYNRSDKIFRELFPE 155
            M SKTS HRLRKEFRNISREPPPHITARPLPSNILKWYFVLEGP  TPYEGGIFMGRLQFPEQYPYKPPAVYMCTPQGRFKCNQKLCLSMSDFHPETWNPLWSVSAVLTGLLSFMLG EDTVGSIQT+ +QKRLLARDSHRYNRSDKIFRELFPE
Sbjct:    1 MTSKTSTHRLRKEFRNISREPPPHITARPLPSNILKWYFVLEGPTNTPYEGGIFMGRLQFPEQYPYKPPAVYMCTPQGRFKCNQKLCLSMSDFHPETWNPLWSVSAVLTGLLSFMLGNEDTVGSIQTTTSQKRLLARDSHRYNRSDKIFRELFPE 155          
BLAST of Gcaud1660.t1 vs. uniprot
Match: R7QEW8_CHOCR (UBC core domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEW8_CHOCR)

HSP 1 Score: 291 bits (745), Expect = 1.830e-98
Identity = 134/155 (86.45%), Postives = 146/155 (94.19%), Query Frame = 0
Query:    1 MASKTSVHRLRKEFRNISREPPPHITARPLPSNILKWYFVLEGPAGTPYEGGIFMGRLQFPEQYPYKPPAVYMCTPQGRFKCNQKLCLSMSDFHPETWNPLWSVSAVLTGLLSFMLGAEDTVGSIQTSEAQKRLLARDSHRYNRSDKIFRELFPE 155
            MASKT  HRLRKE RNISREP PHITARPLPSNIL+WYFVLEGP+ +PYEGGIFMGRLQFPE+YP+KPPAVYMCTPQGRFKCNQKLCLSMSDFHPETWNPLWSVSAVLTGLLSFM+G+EDTVGSIQTS A+KR LAR SH +NR+D++FRELFPE
Sbjct:    1 MASKTCTHRLRKEMRNISREPSPHITARPLPSNILRWYFVLEGPSDSPYEGGIFMGRLQFPEEYPFKPPAVYMCTPQGRFKCNQKLCLSMSDFHPETWNPLWSVSAVLTGLLSFMMGSEDTVGSIQTSAAEKRSLARASHHFNRADRVFRELFPE 155          
BLAST of Gcaud1660.t1 vs. uniprot
Match: A0A7S0XJ18_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XJ18_9RHOD)

HSP 1 Score: 231 bits (589), Expect = 1.800e-74
Identity = 106/155 (68.39%), Postives = 128/155 (82.58%), Query Frame = 0
Query:    1 MASKTSVHRLRKEFRNISREPPPHITARPLPSNILKWYFVLEGPAGTPYEGGIFMGRLQFPEQYPYKPPAVYMCTPQGRFKCNQKLCLSMSDFHPETWNPLWSVSAVLTGLLSFMLGAEDTVGSIQTSEAQKRLLARDSHRYNRSDKIFRELFPE 155
            MAS  +  RLRKE++ I+ +PPPHITARPLPSNIL WYFVL GP  T + GGI++G+L FP QYPYKPP+V++ TP GRFK   KLCLSMSDFHPETWNPLWSV +VLTGLLSFMLG EDT GS++++ ++K  LAR SH++NR D+IFRELFPE
Sbjct:    1 MASSAATSRLRKEYKMITTDPPPHITARPLPSNILMWYFVLRGPPQTAHTGGIYLGKLVFPTQYPYKPPSVHVLTPSGRFKPGAKLCLSMSDFHPETWNPLWSVGSVLTGLLSFMLGDEDTFGSMRSTRSEKLSLARASHKWNRKDRIFRELFPE 155          
BLAST of Gcaud1660.t1 vs. uniprot
Match: A0A5J4Z0Z1_PORPP (Ubiquitin-conjugating enzyme E2 J2 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0Z1_PORPP)

HSP 1 Score: 231 bits (589), Expect = 2.920e-74
Identity = 105/154 (68.18%), Postives = 128/154 (83.12%), Query Frame = 0
Query:    2 ASKTSVHRLRKEFRNISREPPPHITARPLPSNILKWYFVLEGPAGTPYEGGIFMGRLQFPEQYPYKPPAVYMCTPQGRFKCNQKLCLSMSDFHPETWNPLWSVSAVLTGLLSFMLGAEDTVGSIQTSEAQKRLLARDSHRYNRSDKIFRELFPE 155
            AS+T++ RLRKE+RNI R+PPP ITARP PSNIL+WYFV+EGP  TPY+ G++MG+L FP+ YPYKPPAVYM TP GRFK N KLCLSMSDFHPE WN +W V +VLTGLLSFM+G EDTVGS+++++A+KR  A  SH +N  DK+F ELFPE
Sbjct:    4 ASQTALQRLRKEYRNIMRDPPPCITARPHPSNILRWYFVIEGPEDTPYQHGLYMGKLVFPDSYPYKPPAVYMLTPSGRFKPNTKLCLSMSDFHPEEWNAIWGVGSVLTGLLSFMVGNEDTVGSMRSTDAEKRKYATASHDWNEKDKMFAELFPE 157          
BLAST of Gcaud1660.t1 vs. uniprot
Match: A0A7S2Z989_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2Z989_9RHOD)

HSP 1 Score: 231 bits (590), Expect = 4.390e-74
Identity = 103/147 (70.07%), Postives = 123/147 (83.67%), Query Frame = 0
Query:    9 RLRKEFRNISREPPPHITARPLPSNILKWYFVLEGPAGTPYEGGIFMGRLQFPEQYPYKPPAVYMCTPQGRFKCNQKLCLSMSDFHPETWNPLWSVSAVLTGLLSFMLGAEDTVGSIQTSEAQKRLLARDSHRYNRSDKIFRELFPE 155
            RL  E R + R+PPP+IT RPLPS+ILKWYFV+ GP  TPYE GI+MG+L FPE YP+KPPA+YMCTP GRF+ N KLCLSMSDFHPETWNP+WSVSAVLTGLLSFM+G EDT GSI TSE +K  +A+ SH +N+ D+IF+ELFP+
Sbjct:   61 RLAAELRGVERDPPPYITPRPLPSDILKWYFVIRGPKDTPYETGIYMGKLVFPEDYPFKPPAIYMCTPNGRFRTNVKLCLSMSDFHPETWNPVWSVSAVLTGLLSFMVGTEDTFGSIGTSEFEKIKMAKCSHEFNQKDRIFKELFPD 207          
BLAST of Gcaud1660.t1 vs. uniprot
Match: A0A7S3E6W6_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E6W6_9RHOD)

HSP 1 Score: 231 bits (590), Expect = 6.000e-74
Identity = 103/147 (70.07%), Postives = 123/147 (83.67%), Query Frame = 0
Query:    9 RLRKEFRNISREPPPHITARPLPSNILKWYFVLEGPAGTPYEGGIFMGRLQFPEQYPYKPPAVYMCTPQGRFKCNQKLCLSMSDFHPETWNPLWSVSAVLTGLLSFMLGAEDTVGSIQTSEAQKRLLARDSHRYNRSDKIFRELFPE 155
            RL  E R + R+PPP+IT RPLPS+ILKWYFV+ GP  TPYE GI+MG+L FPE YP+KPPA+YMCTP GRF+ N KLCLSMSDFHPETWNP+WSVSAVLTGLLSFM+G EDT GSI TSE +K  +A+ SH +N+ D+IF+ELFP+
Sbjct:   61 RLAAELRGVERDPPPYITPRPLPSDILKWYFVIRGPKDTPYETGIYMGKLVFPEDYPFKPPAIYMCTPNGRFRTNVKLCLSMSDFHPETWNPVWSVSAVLTGLLSFMVGTEDTFGSIGTSEFEKIKMAKCSHEFNQKDRIFKELFPD 207          
BLAST of Gcaud1660.t1 vs. uniprot
Match: A0A7S2ZB86_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZB86_9RHOD)

HSP 1 Score: 210 bits (534), Expect = 1.750e-67
Identity = 95/135 (70.37%), Postives = 111/135 (82.22%), Query Frame = 0
Query:    3 SKTSVHRLRKEFRNISREPPPHITARPLPSNILKWYFVLEGPAGTPYEGGIFMGRLQFPEQYPYKPPAVYMCTPQGRFKCNQKLCLSMSDFHPETWNPLWSVSAVLTGLLSFMLGAEDTVGSIQTSEAQKRLLAR 137
            S  +V RL  E R + R+PPP+IT RPLPS+ILKWYFV+ GP  TPYE GI+MG+L FPE YP+KPPA+YMCTP GRF+ N KLCLSMSDFHPETWNP+WSVSAVLTGLLSFM+G EDT GSI TSE +K  +A+
Sbjct:    2 SACAVKRLAAELRGVERDPPPYITPRPLPSDILKWYFVIRGPKDTPYETGIYMGKLVFPEDYPFKPPAIYMCTPNGRFRTNVKLCLSMSDFHPETWNPVWSVSAVLTGLLSFMVGTEDTFGSIGTSEFEKIKMAK 136          
BLAST of Gcaud1660.t1 vs. uniprot
Match: A0A1X6PET9_PORUM (UBC core domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PET9_PORUM)

HSP 1 Score: 213 bits (542), Expect = 2.040e-66
Identity = 92/155 (59.35%), Postives = 122/155 (78.71%), Query Frame = 0
Query:    1 MASKTSVHRLRKEFRNISREPPPHITARPLPSNILKWYFVLEGPAGTPYEGGIFMGRLQFPEQYPYKPPAVYMCTPQGRFKCNQKLCLSMSDFHPETWNPLWSVSAVLTGLLSFMLGAEDTVGSIQTSEAQKRLLARDSHRYNRSDKIFRELFPE 155
            MA+ T + RLRKE RN+ REPPPH+TARP+PSN+L+W FV+EGP GTPY GG+++GRL+FP+ YP+ PP +YM TP GRF+    +C+SM+  H E+WNP+W +S +L+G LSFM   E T G+I++S+A K+ LAR SH YNR DKIFRELFP+
Sbjct:    1 MATPTCLARLRKELRNLHREPPPHVTARPVPSNMLRWLFVIEGPPGTPYAGGLYVGRLEFPKDYPFHPPTLYMHTPSGRFETGVSVCMSMTSAHVESWNPIWGLSTILSGFLSFMTSDEMTAGAIRSSDADKQRLARKSHAYNRKDKIFRELFPD 155          
BLAST of Gcaud1660.t1 vs. uniprot
Match: A0A7S2Z990_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2Z990_9RHOD)

HSP 1 Score: 208 bits (529), Expect = 5.720e-66
Identity = 93/129 (72.09%), Postives = 108/129 (83.72%), Query Frame = 0
Query:    9 RLRKEFRNISREPPPHITARPLPSNILKWYFVLEGPAGTPYEGGIFMGRLQFPEQYPYKPPAVYMCTPQGRFKCNQKLCLSMSDFHPETWNPLWSVSAVLTGLLSFMLGAEDTVGSIQTSEAQKRLLAR 137
            RL  E R + R+PPP+IT RPLPS+ILKWYFV+ GP  TPYE GI+MG+L FPE YP+KPPA+YMCTP GRF+ N KLCLSMSDFHPETWNP+WSVSAVLTGLLSFM+G EDT GSI TSE +K  +A+
Sbjct:   61 RLAAELRGVERDPPPYITPRPLPSDILKWYFVIRGPKDTPYETGIYMGKLVFPEDYPFKPPAIYMCTPNGRFRTNVKLCLSMSDFHPETWNPVWSVSAVLTGLLSFMVGTEDTFGSIGTSEFEKIKMAK 189          
BLAST of Gcaud1660.t1 vs. uniprot
Match: A0A2R6XMR5_MARPO (UBC core domain-containing protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XMR5_MARPO)

HSP 1 Score: 206 bits (524), Expect = 1.290e-64
Identity = 88/155 (56.77%), Postives = 122/155 (78.71%), Query Frame = 0
Query:    1 MASKTSVHRLRKEFRNISREPPPHITARPLPSNILKWYFVLEGPAGTPYEGGIFMGRLQFPEQYPYKPPAVYMCTPQGRFKCNQKLCLSMSDFHPETWNPLWSVSAVLTGLLSFMLGAEDTVGSIQTSEAQKRLLARDSHRYNRSDKIFRELFPE 155
            MA +  V RL+KEFR++ +EP PHI ARPLP++IL+W++VLEG  GTP+EGG++ G+++FP +YPYKPP + M TP GRF  ++++C+SMSDFHPETWNP+WSVS++LTGLLSFM+    T GS+ T+  +K+ LAR S  YN    +FR++FPE
Sbjct:    1 MAERACVQRLQKEFRSLCKEPAPHILARPLPTDILEWHYVLEGSEGTPFEGGVYHGKVKFPPEYPYKPPGISMITPNGRFATHKRICMSMSDFHPETWNPMWSVSSILTGLLSFMMDNTPTTGSVSTTNEEKQRLARASLAYNCKSAVFRKMFPE 155          
The following BLAST results are available for this feature:
BLAST of Gcaud1660.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IUZ5_9FLOR7.640e-10794.84Ubiquitin-conjugating enzyme E2 J2 n=1 Tax=Gracila... [more]
R7QEW8_CHOCR1.830e-9886.45UBC core domain-containing protein n=1 Tax=Chondru... [more]
A0A7S0XJ18_9RHOD1.800e-7468.39Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
A0A5J4Z0Z1_PORPP2.920e-7468.18Ubiquitin-conjugating enzyme E2 J2 n=1 Tax=Porphyr... [more]
A0A7S2Z989_9RHOD4.390e-7470.07Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S3E6W6_9RHOD6.000e-7470.07Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S2ZB86_9RHOD1.750e-6770.37Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A1X6PET9_PORUM2.040e-6659.35UBC core domain-containing protein n=1 Tax=Porphyr... [more]
A0A7S2Z990_9RHOD5.720e-6672.09Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A2R6XMR5_MARPO1.290e-6456.77UBC core domain-containing protein n=3 Tax=Marchan... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00212ubc_7coord: 8..155
e-value: 3.6E-29
score: 112.9
NoneNo IPR availablePANTHERPTHR24067:SF257UBIQUITIN CONJUGATING ENZYMEcoord: 2..148
NoneNo IPR availablePANTHERPTHR24067UBIQUITIN-CONJUGATING ENZYME E2coord: 2..148
IPR000608Ubiquitin-conjugating enzyme E2PFAMPF00179UQ_concoord: 9..120
e-value: 2.2E-20
score: 72.8
IPR000608Ubiquitin-conjugating enzyme E2PROSITEPS50127UBC_2coord: 5..155
score: 39.266785
IPR000608Ubiquitin-conjugating enzyme E2CDDcd00195UBCccoord: 9..119
e-value: 6.43918E-45
score: 142.341
IPR016135Ubiquitin-conjugating enzyme/RWD-likeGENE3D3.10.110.10Ubiquitin Conjugating Enzymecoord: 1..155
e-value: 4.5E-54
score: 184.6
IPR016135Ubiquitin-conjugating enzyme/RWD-likeSUPERFAMILY54495UBC-likecoord: 7..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_34_length_72082_cov_4.421108contigNODE_34_length_72082_cov_4.421108:60623..61640 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1660.t1Gcaud1660.t1Gracilaria caudata M_176_S67 malemRNANODE_34_length_72082_cov_4.421108 60623..61640 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1660.t1 ID=Gcaud1660.t1|Name=Gcaud1660.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=156bp
MASKTSVHRLRKEFRNISREPPPHITARPLPSNILKWYFVLEGPAGTPYE
GGIFMGRLQFPEQYPYKPPAVYMCTPQGRFKCNQKLCLSMSDFHPETWNP
LWSVSAVLTGLLSFMLGAEDTVGSIQTSEAQKRLLARDSHRYNRSDKIFR
ELFPE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000608UBQ-conjugat_E2
IPR016135UBQ-conjugating_enzyme/RWD