Gcaud1660.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1660.t1
Unique NameGcaud1660.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length156
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_34_length_72082_cov_4.421108contigNODE_34_length_72082_cov_4.421108:60623..61640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9031.ENSGALP00000002860
Preferred nameUBE2J2
PFAMsUQ_con
Max annot lvl33208|Metazoa
KEGG koko:K04554
KEGG Pathwayko04120,ko04141,ko05012,map04120,map04141,map05012
GOsGO:0000151,GO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0030433,GO:0031625,GO:0031984,GO:0032446,GO:0032991,GO:0033554,GO:0034976,GO:0036211,GO:0036503,GO:0042175,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051603,GO:0051716,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0070647,GO:0071704,GO:0098827,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1902494,GO:1990234
Evalue4.15e-63
EggNOG OGsKOG0894@1|root,KOG0894@2759|Eukaryota,38FN8@33154|Opisthokonta,3B9P6@33208|Metazoa,3CYQP@33213|Bilateria,48AGC@7711|Chordata,492E1@7742|Vertebrata,4GKD4@8782|Aves
EC2.3.2.23
DescriptionUbiquitin-conjugating enzyme E2, J2
COG categoryO
BRITEko00000,ko00001,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1660Gcaud1660Gracilaria caudata M_176_S67 malegeneNODE_34_length_72082_cov_4.421108 60623..61640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1660.t1Gcaud1660.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_34_length_72082_cov_4.421108 60623..61640 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1660.t1.start1Gcaud1660.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_34_length_72082_cov_4.421108 60623..60625 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1660.t1.CDS1Gcaud1660.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_34_length_72082_cov_4.421108 60623..60643 +
Gcaud1660.t1.CDS2Gcaud1660.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_34_length_72082_cov_4.421108 60769..60955 +
Gcaud1660.t1.CDS3Gcaud1660.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_34_length_72082_cov_4.421108 61023..61278 +
Gcaud1660.t1.CDS4Gcaud1660.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_34_length_72082_cov_4.421108 61637..61640 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1660.t1.exon1Gcaud1660.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_34_length_72082_cov_4.421108 60623..60643 +
Gcaud1660.t1.exon2Gcaud1660.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_34_length_72082_cov_4.421108 60769..60955 +
Gcaud1660.t1.exon3Gcaud1660.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_34_length_72082_cov_4.421108 61023..61278 +
Gcaud1660.t1.exon4Gcaud1660.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_34_length_72082_cov_4.421108 61637..61640 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1660.t1.intron1Gcaud1660.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_34_length_72082_cov_4.421108 60644..60768 +
Gcaud1660.t1.intron2Gcaud1660.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_34_length_72082_cov_4.421108 60956..61022 +
Gcaud1660.t1.intron3Gcaud1660.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_34_length_72082_cov_4.421108 61279..61636 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1660.t1.stop1Gcaud1660.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_34_length_72082_cov_4.421108 61638..61640 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1660.t1 ID=Gcaud1660.t1|Name=Gcaud1660.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=156bp
MASKTSVHRLRKEFRNISREPPPHITARPLPSNILKWYFVLEGPAGTPYE
GGIFMGRLQFPEQYPYKPPAVYMCTPQGRFKCNQKLCLSMSDFHPETWNP
LWSVSAVLTGLLSFMLGAEDTVGSIQTSEAQKRLLARDSHRYNRSDKIFR
ELFPE*
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spliced messenger RNA

>Gcaud1660.t1 ID=Gcaud1660.t1|Name=Gcaud1660.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=468bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:60623..61640+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCGAAGACGAGTGTGCATCGATTGAGGAAGGAGTTTCGAAACAT
TTCGAGAGAACCGCCACCACATATCACTGCGCGTCCGCTGCCATCCAATA
TTCTCAAGTGGTACTTTGTGCTTGAGGGACCGGCAGGCACGCCGTATGAG
GGCGGCATATTCATGGGACGTTTACAGTTTCCGGAGCAGTATCCGTACAA
ACCGCCAGCCGTGTACATGTGCACGCCACAAGGAAGATTCAAGTGCAACC
AAAAACTTTGTCTTTCAATGTCCGACTTTCACCCGGAGACATGGAATCCC
TTATGGTCCGTGTCGGCAGTTCTCACCGGATTACTCTCTTTCATGCTAGG
GGCTGAGGATACAGTCGGCTCAATTCAAACTTCTGAGGCACAAAAACGAC
TCCTAGCGAGAGATTCTCACCGTTACAATCGTTCAGACAAGATCTTTCGC
GAGCTATTTCCGGAATAG
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protein sequence of Gcaud1660.t1

>Gcaud1660.t1 ID=Gcaud1660.t1|Name=Gcaud1660.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=156bp
MASKTSVHRLRKEFRNISREPPPHITARPLPSNILKWYFVLEGPAGTPYE
GGIFMGRLQFPEQYPYKPPAVYMCTPQGRFKCNQKLCLSMSDFHPETWNP
LWSVSAVLTGLLSFMLGAEDTVGSIQTSEAQKRLLARDSHRYNRSDKIFR
ELFPE*
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mRNA from alignment at NODE_34_length_72082_cov_4.421108:60623..61640+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1660.t1 ID=Gcaud1660.t1|Name=Gcaud1660.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1018bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:60623..61640+ (Gracilaria caudata M_176_S67 male)
ATGGCTTCGAAGACGAGTGTGGTAAGTTGTTCCAGCGCCGGCTTTTTGAT
AATGGGGCGCCGTTCTTCCCAACGCTGATAGATTGCTCACAGCGCGTATT
TGTTTTCGCTTTTTCTGTCGCGCTTGCGTTTGGTTGCGCGCTTTAGCATC
GATTGAGGAAGGAGTTTCGAAACATTTCGAGAGAACCGCCACCACATATC
ACTGCGCGTCCGCTGCCATCCAATATTCTCAAGTGGTACTTTGTGCTTGA
GGGACCGGCAGGCACGCCGTATGAGGGCGGCATATTCATGGGACGTTTAC
AGTTTCCGGAGCAGTATCCGTACAAACCGCCAGGTACGTCTTGTTTGTTT
ACCCTCTTGAGCCTTTCGTGTTGCTAACCCTGTGAGTCACCTCTTAAAAG
CCGTGTACATGTGCACGCCACAAGGAAGATTCAAGTGCAACCAAAAACTT
TGTCTTTCAATGTCCGACTTTCACCCGGAGACATGGAATCCCTTATGGTC
CGTGTCGGCAGTTCTCACCGGATTACTCTCTTTCATGCTAGGGGCTGAGG
ATACAGTCGGCTCAATTCAAACTTCTGAGGCACAAAAACGACTCCTAGCG
AGAGATTCTCACCGTTACAATCGTTCAGACAAGATCTTTCGCGAGCTATT
TCCGGAGTACGTCAGAAACATCACCACTACAACCCCTTCAAATCTCCCCT
TGGCTAGAAACAGTCACTCTGCCGTCGATCATCAAAGTACGCGGCGACCG
CGTCGAACCGAGCACGAGAAGGAAAGTTTGTTGAGTTTGATTGCGTGGTT
GTTTGTGTTTCTTGCGTTGATTTTCGGTGTGCTCAGTTTTATCTCGGGAT
CACCTTAGCTTTTTGGCTTATCGTGTTCTCAATGCAGATACTTTTTTTAT
ACTTTCTTGTCTGTCAATGTGTTTTGACCACCTCTTCTTGTCACTTGTTC
ATCCTGTAACAATGTTCGTGCGCTTTTCATGCACTTGAACAACATACGTA
CTATTGGTCAGTAGATAG
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Coding sequence (CDS) from alignment at NODE_34_length_72082_cov_4.421108:60623..61640+

>Gcaud1660.t1 ID=Gcaud1660.t1|Name=Gcaud1660.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=468bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:60623..61640+ (Gracilaria caudata M_176_S67 male)
ATGGCTTCGAAGACGAGTGTGCATCGATTGAGGAAGGAGTTTCGAAACAT
TTCGAGAGAACCGCCACCACATATCACTGCGCGTCCGCTGCCATCCAATA
TTCTCAAGTGGTACTTTGTGCTTGAGGGACCGGCAGGCACGCCGTATGAG
GGCGGCATATTCATGGGACGTTTACAGTTTCCGGAGCAGTATCCGTACAA
ACCGCCAGCCGTGTACATGTGCACGCCACAAGGAAGATTCAAGTGCAACC
AAAAACTTTGTCTTTCAATGTCCGACTTTCACCCGGAGACATGGAATCCC
TTATGGTCCGTGTCGGCAGTTCTCACCGGATTACTCTCTTTCATGCTAGG
GGCTGAGGATACAGTCGGCTCAATTCAAACTTCTGAGGCACAAAAACGAC
TCCTAGCGAGAGATTCTCACCGTTACAATCGTTCAGACAAGATCTTTCGC
GAGCTATTTCCGGAATAG
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